René's URL Explorer Experiment


Title: GitHub - SystemsBioinformatics/ecmtool: Uncover organisms' metabolic blueprints

Open Graph Title: GitHub - SystemsBioinformatics/ecmtool: Uncover organisms' metabolic blueprints

X Title: GitHub - SystemsBioinformatics/ecmtool: Uncover organisms' metabolic blueprints

Description: Uncover organisms' metabolic blueprints. Contribute to SystemsBioinformatics/ecmtool development by creating an account on GitHub.

Open Graph Description: Uncover organisms' metabolic blueprints. Contribute to SystemsBioinformatics/ecmtool development by creating an account on GitHub.

X Description: Uncover organisms' metabolic blueprints. Contribute to SystemsBioinformatics/ecmtool development by creating an account on GitHub.

Opengraph URL: https://github.com/SystemsBioinformatics/ecmtool

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:626a99fd-ecb1-a849-384e-332a9c9509b9
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idAB38:13A39:72A318:9D81FB:698D9294
html-safe-noncef4126558a2409db7f68b528357da1bcc5dd99240ba4b1ee59793deda637b3d11
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJBQjM4OjEzQTM5OjcyQTMxODo5RDgxRkI6Njk4RDkyOTQiLCJ2aXNpdG9yX2lkIjoiMTY4NzQ2NTY2Mjc5NDc5NzcxNiIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmaca0b7fc94ae3127829e46728bee5f8ae1b0fa8bb164d435f1928ac19ff8322657
hovercard-subject-tagrepository:151599182
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/SystemsBioinformatics/ecmtool
twitter:imagehttps://opengraph.githubassets.com/69bb0802e3b1b8a83da2782a5b52a2cf904c4757890c37056ac2fdf85eb6842e/SystemsBioinformatics/ecmtool
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/69bb0802e3b1b8a83da2782a5b52a2cf904c4757890c37056ac2fdf85eb6842e/SystemsBioinformatics/ecmtool
og:image:altUncover organisms' metabolic blueprints. Contribute to SystemsBioinformatics/ecmtool development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Nonec0818105fa276287e9369cfdefa0a0fa7953719791ceff9b94d69623c0a4fe8a
turbo-cache-controlno-preview
go-importgithub.com/SystemsBioinformatics/ecmtool git https://github.com/SystemsBioinformatics/ecmtool.git
octolytics-dimension-user_id12168054
octolytics-dimension-user_loginSystemsBioinformatics
octolytics-dimension-repository_id151599182
octolytics-dimension-repository_nwoSystemsBioinformatics/ecmtool
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id151599182
octolytics-dimension-repository_network_root_nwoSystemsBioinformatics/ecmtool
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releasecefb6b50cb02e85b21d59b711abca4e67e11cf47
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FSystemsBioinformatics%2Fecmtool
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FSystemsBioinformatics%2Fecmtool
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=SystemsBioinformatics%2Fecmtool
Reloadhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool
Reloadhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool
Reloadhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool
SystemsBioinformatics https://patch-diff.githubusercontent.com/SystemsBioinformatics
ecmtoolhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FSystemsBioinformatics%2Fecmtool
Fork 5 https://patch-diff.githubusercontent.com/login?return_to=%2FSystemsBioinformatics%2Fecmtool
Star 13 https://patch-diff.githubusercontent.com/login?return_to=%2FSystemsBioinformatics%2Fecmtool
MIT license https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/LICENSE
13 stars https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/stargazers
5 forks https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/forks
Branches https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/branches
Tags https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tags
Activity https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FSystemsBioinformatics%2Fecmtool
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FSystemsBioinformatics%2Fecmtool
Code https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool
Issues 0 https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/issues
Pull requests 1 https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/pulls
Projects 0 https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/projects
Security 0 https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/security
Insights https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/pulse
Code https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool
Issues https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/issues
Pull requests https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/pulls
Projects https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/projects
Security https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/security
Insights https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/pulse
Brancheshttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/branches
Tagshttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tags
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/branches
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tags
544 Commitshttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/commits/master/
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/commits/master/
.githubhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/.github
.githubhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/.github
.ideahttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/.idea
.ideahttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/.idea
datahttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/data
datahttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/data
dockerhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/docker
dockerhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/docker
ecmtoolhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/ecmtool
ecmtoolhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/ecmtool
examples_and_resultshttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/examples_and_results
examples_and_resultshttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/examples_and_results
modelshttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/models
modelshttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/models
results_and_corresponding_runscriptshttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/results_and_corresponding_runscripts
results_and_corresponding_runscriptshttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/results_and_corresponding_runscripts
scipyhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/scipy
scipyhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/scipy
testshttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/tests
testshttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/tests
tmphttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/tmp
tmphttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tree/master/tmp
.gitignorehttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/.gitignore
ExampleUseECM.pyhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/ExampleUseECM.py
ExampleUseECM.pyhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/ExampleUseECM.py
LICENSEhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/LICENSE
MANIFEST.inhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/MANIFEST.in
MANIFEST.inhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/MANIFEST.in
README.mdhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/README.md
core_conversions.csvhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/core_conversions.csv
core_conversions.csvhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/core_conversions.csv
cython_setup.pyhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/cython_setup.py
cython_setup.pyhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/cython_setup.py
main.pyhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/main.py
main.pyhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/main.py
requirements.txthttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/requirements.txt
requirements.txthttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/requirements.txt
run_docker_mac.shhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/run_docker_mac.sh
run_docker_mac.shhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/run_docker_mac.sh
run_docker_windows.bathttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/run_docker_windows.bat
run_docker_windows.bathttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/run_docker_windows.bat
run_tests.shhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/run_tests.sh
run_tests.shhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/run_tests.sh
setup.pyhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/setup.py
setup.pyhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/blob/master/setup.py
READMEhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool
MIT licensehttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#ecmtool---uncover-organisms-metabolic-blueprints
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#prerequisites
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#mode-1-standalone-command-line-tool
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#installation
https://github.com/tjclement/ecmtoolhttps://github.com/tjclement/ecmtool
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#installing-ecmtool-using-docker
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#installing-ecmtool-using-singularity
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#running
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#example
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#benefiting-from-optional-arguments-of-ecmtool
https://doi.org/10.1016/j.patter.2020.100177https://doi.org/10.1016/j.patter.2020.100177
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#mode-2-python-library
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#example-1
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#example-scripts
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#enumerating-ecms-without-an-sbml-file
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#advanced-usage
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#parallel-computing-with-openmpi
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#advanced-ecm-computation-on-a-computing-cluster
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#installation-of-ecmtool-when-the-user-does-not-have-root-privileges-on-the-cluster-a-case-report
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#running-ecmtool-using-separate-runs-for-non-parallel-and-parallel-parts-with-a-sh-script-on-a-slurm-cluster
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#doubling-direct-enumeration-method-speed
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#automatically-testing-ecmtool-and-contributing-to-ecmtool
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#citing-ecmtool
https://www.cell.com/patterns/fulltext/S2666-3899(20)30241-5https://www.cell.com/patterns/fulltext/S2666-3899(20)30241-5
https://doi.org/10.1093/bioinformatics/btad095https://doi.org/10.1093/bioinformatics/btad095
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#acknowledgements
Tom Clementhttps://scholar.google.com/citations?user=kUD5y04AAAAJ
Erik Baalhuishttps://github.com/EBaalhuis
Daan de Groothttps://scholar.google.com/citations?user=xY_GjWkAAAAJ
Bianca Buchnerhttps://github.com/BeeAnka
https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#license
Readme https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#readme-ov-file
MIT license https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool#MIT-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool
Activityhttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/activity
Custom propertieshttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/custom-properties
13 starshttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/stargazers
6 watchinghttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/watchers
5 forkshttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FSystemsBioinformatics%2Fecmtool&report=SystemsBioinformatics+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/releases
15 tags https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/tags
Packages 0https://patch-diff.githubusercontent.com/orgs/SystemsBioinformatics/packages?repo_name=ecmtool
Please reload this pagehttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool
Contributors 3https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool
Python 82.1% https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/search?l=python
MATLAB 12.0% https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/search?l=matlab
Cython 3.8% https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/search?l=cython
Shell 1.8% https://patch-diff.githubusercontent.com/SystemsBioinformatics/ecmtool/search?l=shell
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.