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Title: GitHub - SlavovLab/decode: Computational pipeline for quantifying amino acid substitutions from alternate RNA decoding

Open Graph Title: GitHub - SlavovLab/decode: Computational pipeline for quantifying amino acid substitutions from alternate RNA decoding

X Title: GitHub - SlavovLab/decode: Computational pipeline for quantifying amino acid substitutions from alternate RNA decoding

Description: Computational pipeline for quantifying amino acid substitutions from alternate RNA decoding - SlavovLab/decode

Open Graph Description: Computational pipeline for quantifying amino acid substitutions from alternate RNA decoding - SlavovLab/decode

X Description: Computational pipeline for quantifying amino acid substitutions from alternate RNA decoding - SlavovLab/decode

Opengraph URL: https://github.com/SlavovLab/decode

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