René's URL Explorer Experiment


Title: GitHub - SkinMicrobe/ITM

Open Graph Title: GitHub - SkinMicrobe/ITM

X Title: GitHub - SkinMicrobe/ITM

Description: Contribute to SkinMicrobe/ITM development by creating an account on GitHub.

Open Graph Description: Contribute to SkinMicrobe/ITM development by creating an account on GitHub.

X Description: Contribute to SkinMicrobe/ITM development by creating an account on GitHub.

Opengraph URL: https://github.com/SkinMicrobe/ITM

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:1571fdea-9383-f9c6-ab49-eba4f114f0dc
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idA150:19CE2B:E63E55:13CB14E:698E1A72
html-safe-nonce8fa8226ebcef125f2eb09557fb60a8d9f16a5926dab70f9453dcaa38004ff19c
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJBMTUwOjE5Q0UyQjpFNjNFNTU6MTNDQjE0RTo2OThFMUE3MiIsInZpc2l0b3JfaWQiOiI0OTM2NTQ5NTg5NzU2ODExODkxIiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmac2dddd2c8e71b883ba7e3dd183d776d527deb2abd33acf463aa834920996929ff
hovercard-subject-tagrepository:1034903760
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/SkinMicrobe/ITM
twitter:imagehttps://opengraph.githubassets.com/a1dec8a99750d9a4190d4cd71d9c9942ea8293f1ec61640e8dc71019c2aec84a/SkinMicrobe/ITM
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/a1dec8a99750d9a4190d4cd71d9c9942ea8293f1ec61640e8dc71019c2aec84a/SkinMicrobe/ITM
og:image:altContribute to SkinMicrobe/ITM development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None52130a026bd9a3f98228b6aa6af91acdab5d18de411e2c1e67e6253493561296
turbo-cache-controlno-preview
go-importgithub.com/SkinMicrobe/ITM git https://github.com/SkinMicrobe/ITM.git
octolytics-dimension-user_id204423839
octolytics-dimension-user_loginSkinMicrobe
octolytics-dimension-repository_id1034903760
octolytics-dimension-repository_nwoSkinMicrobe/ITM
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id1034903760
octolytics-dimension-repository_network_root_nwoSkinMicrobe/ITM
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release301a1d7743177dcb7528b1322117cdafeda8ff08
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FSkinMicrobe%2FITM
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FSkinMicrobe%2FITM
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=SkinMicrobe%2FITM
Reloadhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM
Reloadhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM
Reloadhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM
SkinMicrobe https://patch-diff.githubusercontent.com/SkinMicrobe
ITMhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FSkinMicrobe%2FITM
Fork 0 https://patch-diff.githubusercontent.com/login?return_to=%2FSkinMicrobe%2FITM
Star 0 https://patch-diff.githubusercontent.com/login?return_to=%2FSkinMicrobe%2FITM
0 stars https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/stargazers
0 forks https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/forks
Branches https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/branches
Tags https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tags
Activity https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FSkinMicrobe%2FITM
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FSkinMicrobe%2FITM
Code https://patch-diff.githubusercontent.com/SkinMicrobe/ITM
Issues 0 https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/issues
Pull requests 0 https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/pulls
Actions https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/actions
Projects 0 https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/projects
Security 0 https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/security
Insights https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/pulse
Code https://patch-diff.githubusercontent.com/SkinMicrobe/ITM
Issues https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/issues
Pull requests https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/pulls
Actions https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/actions
Projects https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/projects
Security https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/security
Insights https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/pulse
Brancheshttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/branches
Tagshttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tags
https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/branches
https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tags
4 Commitshttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/commits/main/
https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/commits/main/
01-Raw2fastqhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tree/main/01-Raw2fastq
01-Raw2fastqhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tree/main/01-Raw2fastq
02-fastphttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tree/main/02-fastp
02-fastphttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tree/main/02-fastp
03-bowtie2_grchhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tree/main/03-bowtie2_grch
03-bowtie2_grchhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tree/main/03-bowtie2_grch
04-bowtie2_chmhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tree/main/04-bowtie2_chm
04-bowtie2_chmhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tree/main/04-bowtie2_chm
05-kraken_beackenhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tree/main/05-kraken_beacken
05-kraken_beackenhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tree/main/05-kraken_beacken
06-Decontamhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tree/main/06-Decontam
06-Decontamhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tree/main/06-Decontam
07-kraken_toolshttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tree/main/07-kraken_tools
07-kraken_toolshttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tree/main/07-kraken_tools
itm_helperhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tree/main/itm_helper
itm_helperhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/tree/main/itm_helper
README.mdhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/blob/main/README.md
all_pipeline.txthttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/blob/main/all_pipeline.txt
all_pipeline.txthttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/blob/main/all_pipeline.txt
READMEhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM
https://patch-diff.githubusercontent.com/SkinMicrobe/ITM#itm-intra-tumoral-microbiome-analysis-pipeline
https://patch-diff.githubusercontent.com/SkinMicrobe/ITM#introduction
https://patch-diff.githubusercontent.com/SkinMicrobe/ITM#overview
https://patch-diff.githubusercontent.com/SkinMicrobe/ITM#main-features
https://patch-diff.githubusercontent.com/SkinMicrobe/ITM#step-by-step-pipeline
https://patch-diff.githubusercontent.com/SkinMicrobe/ITM#step-1--raw-data-conversion-01-raw2fastq
https://patch-diff.githubusercontent.com/SkinMicrobe/ITM#step-2--quality-control-02-fastp
https://patch-diff.githubusercontent.com/SkinMicrobe/ITM#step-3--first-host-removal-grch38-03-bowtie2_grch
https://patch-diff.githubusercontent.com/SkinMicrobe/ITM#step-4--second-host-removal-chm13-04-bowtie2_chm
https://patch-diff.githubusercontent.com/SkinMicrobe/ITM#step-5--taxonomic-classification--quantitation-05-kraken_beacken
https://patch-diff.githubusercontent.com/SkinMicrobe/ITM#step-6--contamination-removal-06-decontam
https://patch-diff.githubusercontent.com/SkinMicrobe/ITM#step-7--microbiome-data-extraction-07-kraken_tools
https://patch-diff.githubusercontent.com/SkinMicrobe/ITM#advantages-over-conventional-methods
https://patch-diff.githubusercontent.com/SkinMicrobe/ITM#environment
Readme https://patch-diff.githubusercontent.com/SkinMicrobe/ITM#readme-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM
Activityhttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/activity
Custom propertieshttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/custom-properties
0 starshttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/stargazers
0 watchinghttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/watchers
0 forkshttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FSkinMicrobe%2FITM&report=SkinMicrobe+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/SkinMicrobe/ITM/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/SkinMicrobe/packages?repo_name=ITM
Python 76.9% https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/search?l=python
Shell 23.1% https://patch-diff.githubusercontent.com/SkinMicrobe/ITM/search?l=shell
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.