René's URL Explorer Experiment


Title: GitHub - Scientific-Computing-Lab/AdarEdit: AdarEdit: A Graph Foundation Model for Interpretable RNA A-to-I Editing Prediction

Open Graph Title: GitHub - Scientific-Computing-Lab/AdarEdit: AdarEdit: A Graph Foundation Model for Interpretable RNA A-to-I Editing Prediction

X Title: GitHub - Scientific-Computing-Lab/AdarEdit: AdarEdit: A Graph Foundation Model for Interpretable RNA A-to-I Editing Prediction

Description: AdarEdit: A Graph Foundation Model for Interpretable RNA A-to-I Editing Prediction - Scientific-Computing-Lab/AdarEdit

Open Graph Description: AdarEdit: A Graph Foundation Model for Interpretable RNA A-to-I Editing Prediction - Scientific-Computing-Lab/AdarEdit

X Description: AdarEdit: A Graph Foundation Model for Interpretable RNA A-to-I Editing Prediction - Scientific-Computing-Lab/AdarEdit

Opengraph URL: https://github.com/Scientific-Computing-Lab/AdarEdit

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:917a3bd1-65ae-dab4-a103-5ea0f3379d47
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id9DFC:18813B:7487DF:9C50A4:698E389B
html-safe-nonce029828a1330b046c3ab3cc566642a6d49feea6266391b13a9107a2bb74d873f6
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5REZDOjE4ODEzQjo3NDg3REY6OUM1MEE0OjY5OEUzODlCIiwidmlzaXRvcl9pZCI6IjY0NzU3ODAyNTI3NjUxNDExNDciLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmac3375ec9290bf96a9ebb72d157f4920e256bf724e9a742ba01c40c7d697b036cc
hovercard-subject-tagrepository:1038131834
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/Scientific-Computing-Lab/AdarEdit
twitter:imagehttps://opengraph.githubassets.com/823e72a8991401e6423fbf0dac2afb57e23127b832624079b90ee3ac35e9ef81/Scientific-Computing-Lab/AdarEdit
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/823e72a8991401e6423fbf0dac2afb57e23127b832624079b90ee3ac35e9ef81/Scientific-Computing-Lab/AdarEdit
og:image:altAdarEdit: A Graph Foundation Model for Interpretable RNA A-to-I Editing Prediction - Scientific-Computing-Lab/AdarEdit
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Nonea5632af64f7fed7bff1d6a428d1aca1b94fa7a48f760de2d39d9b1effdbf0082
turbo-cache-controlno-preview
go-importgithub.com/Scientific-Computing-Lab/AdarEdit git https://github.com/Scientific-Computing-Lab/AdarEdit.git
octolytics-dimension-user_id59704101
octolytics-dimension-user_loginScientific-Computing-Lab
octolytics-dimension-repository_id1038131834
octolytics-dimension-repository_nwoScientific-Computing-Lab/AdarEdit
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id1038131834
octolytics-dimension-repository_network_root_nwoScientific-Computing-Lab/AdarEdit
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releaseaa1fa9100f85cd8b602c63c7e337f9151e70024f
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FScientific-Computing-Lab%2FAdarEdit
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FScientific-Computing-Lab%2FAdarEdit
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=Scientific-Computing-Lab%2FAdarEdit
Reloadhttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit
Reloadhttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit
Reloadhttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit
Scientific-Computing-Lab https://patch-diff.githubusercontent.com/Scientific-Computing-Lab
AdarEdithttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FScientific-Computing-Lab%2FAdarEdit
Fork 0 https://patch-diff.githubusercontent.com/login?return_to=%2FScientific-Computing-Lab%2FAdarEdit
Star 1 https://patch-diff.githubusercontent.com/login?return_to=%2FScientific-Computing-Lab%2FAdarEdit
1 star https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/stargazers
0 forks https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/forks
Branches https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/branches
Tags https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/tags
Activity https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FScientific-Computing-Lab%2FAdarEdit
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FScientific-Computing-Lab%2FAdarEdit
Code https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit
Issues 0 https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/issues
Pull requests 0 https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/pulls
Actions https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/actions
Projects 0 https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/projects
Security 0 https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/security
Insights https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/pulse
Code https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit
Issues https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/issues
Pull requests https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/pulls
Actions https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/actions
Projects https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/projects
Security https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/security
Insights https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/pulse
Brancheshttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/branches
Tagshttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/tags
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/branches
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/tags
66 Commitshttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/commits/main/
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/commits/main/
Figurehttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/tree/main/Figure
Figurehttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/tree/main/Figure
Scripthttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/tree/main/Script
Scripthttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/tree/main/Script
Tableshttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/tree/main/Tables
Tableshttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/tree/main/Tables
datahttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/tree/main/data
datahttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/tree/main/data
README.mdhttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/blob/main/README.md
data_evo.ziphttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/blob/main/data_evo.zip
data_evo.ziphttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/blob/main/data_evo.zip
environment.ymlhttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/blob/main/environment.yml
environment.ymlhttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/blob/main/environment.yml
environment_evolution.ymlhttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/blob/main/environment_evolution.yml
environment_evolution.ymlhttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/blob/main/environment_evolution.yml
predictions_baseline_bioaware.ziphttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/blob/main/predictions_baseline_bioaware.zip
predictions_baseline_bioaware.ziphttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/blob/main/predictions_baseline_bioaware.zip
READMEhttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#adaredit-structure-aware-graph-learning-predicts-adar-editability-across-tissues-and-species
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#key-features
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#model-architectures
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/blob/main/Figure/ADAREdit_Model_V2.png
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#getting-started
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#requirements
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#steps-to-use-the-environmentyml-file
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#create-the-environment
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#data-processing-pipeline
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/blob/main/Figure/ADAR-EDIT-DATA.png
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#step-1a-human-alu-dataset-construction
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#step-1b-cross-tissue-data-splitting
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#step-2-cross-species-dataset-construction-non-alu
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#pipeline-overview
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#0-environment--dependencies
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#rnastructure-data-tables-datapath
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#bprna-installation
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#1-inputs-per-species
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#2-end-to-end-pipeline
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#step-1--parse-editing-table--csv--bed6
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#step-2--cluster-nearby-editing-sites-strand-aware
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#step-3--fold-windows-choose-dsrna-segment-with-majority-of-es-annotate-sites--nearby-a
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#step-4--merge-structure-results-with-per-site-editing-levels
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#step-5--de-duplicate-groups--filter-by-length--coverage-and-optional-editing-threshold
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#step-6--prepare-balanced-ml-trainvalid-sets-per-species
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#data-format-conversion
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#script-scripthuman_aludata_preparationcsv_to_jsonlpy
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#usage
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#input-format-csv
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#output-format-jsonl
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#model-training-and-evaluation
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#script-scriptsmodelrun_all_evals_bioaware_baselinepy
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#basic-usage
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#advanced-options
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#input-data-structure
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#output-structure
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#model-selection
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#individual-model-training-alternative
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#baseline
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#cross-tissue-and-cross-species-performance
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/blob/main/Figure/cross_tissues_evo.png
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#model-interpretability
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#1-xgboost-based-feature-analysis
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#process
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/blob/main/Figure/interpertability_process_1.png
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#2-graph-attention-analysis
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#adar-rules-analysis-in-silico-mutagenesis
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/blob/main/Figure/ADAR_RULES.png
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#inputs
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#sample-filtering-paper-setting
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#scripts
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#1-core-motif-preference-heatmaps-sequence--structure
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#2-structural-impact-across-a-full-window-paired--unpaired
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#3-partner-interaction-matrix-paired-mutations-with-edge-removal
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#training-dynamics-and-checkpoint-robustness-bio-aware-model
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/blob/main/Figure/APPENDIX_training_dynamics.png
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#data-csv-exports
https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#regenerating-plots-from-training-logs
Readme https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit#readme-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit
Activityhttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/activity
Custom propertieshttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/custom-properties
1 starhttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/stargazers
0 watchinghttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/watchers
0 forkshttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FScientific-Computing-Lab%2FAdarEdit&report=Scientific-Computing-Lab+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/Scientific-Computing-Lab/packages?repo_name=AdarEdit
Python 91.1% https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/search?l=python
R 8.9% https://patch-diff.githubusercontent.com/Scientific-Computing-Lab/AdarEdit/search?l=r
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.