René's URL Explorer Experiment


Title: GitHub - RuleWorld/BNGTutorial: Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.

Open Graph Title: GitHub - RuleWorld/BNGTutorial: Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.

X Title: GitHub - RuleWorld/BNGTutorial: Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.

Description: Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools. - RuleWorld/BNGTutorial

Open Graph Description: Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools. - RuleWorld/BNGTutorial

X Description: Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools. - RuleWorld/BNGTutorial

Opengraph URL: https://github.com/RuleWorld/BNGTutorial

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:23a77642-763b-0fa9-4548-c8e77d0dca83
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idCC6E:C2ADE:4FE26:6176A:697FFF5D
html-safe-nonceca521c49548bd05d00d0b6c593150b9b302675b2f65aa708a4077cca78beae15
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJDQzZFOkMyQURFOjRGRTI2OjYxNzZBOjY5N0ZGRjVEIiwidmlzaXRvcl9pZCI6IjU3OTc3NTM4NDkwMTE3NjUwODUiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmac80d5cc07942751fc1d2c4c0ec55d81821ef71b30a1218688f139538fb2d8d22b
hovercard-subject-tagrepository:122850160
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/RuleWorld/BNGTutorial
twitter:imagehttps://opengraph.githubassets.com/5fdb38c138c704c938ccf65c3cdd510f4d46f03c61498ecb76931cebb2846e00/RuleWorld/BNGTutorial
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/5fdb38c138c704c938ccf65c3cdd510f4d46f03c61498ecb76931cebb2846e00/RuleWorld/BNGTutorial
og:image:altModels that demonstrate the syntax and functionality of BioNetGen language and simulation tools. - RuleWorld/BNGTutorial
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None60279d4097367e16897439d16d6bbe4180663db828c666eeed2656988ffe59f6
turbo-cache-controlno-preview
go-importgithub.com/RuleWorld/BNGTutorial git https://github.com/RuleWorld/BNGTutorial.git
octolytics-dimension-user_id11491841
octolytics-dimension-user_loginRuleWorld
octolytics-dimension-repository_id122850160
octolytics-dimension-repository_nwoRuleWorld/BNGTutorial
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id122850160
octolytics-dimension-repository_network_root_nwoRuleWorld/BNGTutorial
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release7c85641c598ad130c74f7bcc27f58575cac69551
ui-targetcanary-2
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FRuleWorld%2FBNGTutorial
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FRuleWorld%2FBNGTutorial
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=RuleWorld%2FBNGTutorial
Reloadhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial
Reloadhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial
Reloadhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial
RuleWorld https://patch-diff.githubusercontent.com/RuleWorld
BNGTutorialhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FRuleWorld%2FBNGTutorial
Fork 3 https://patch-diff.githubusercontent.com/login?return_to=%2FRuleWorld%2FBNGTutorial
Star 15 https://patch-diff.githubusercontent.com/login?return_to=%2FRuleWorld%2FBNGTutorial
15 stars https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/stargazers
3 forks https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/forks
Branches https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/branches
Tags https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tags
Activity https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FRuleWorld%2FBNGTutorial
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FRuleWorld%2FBNGTutorial
Code https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial
Issues 0 https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/issues
Pull requests 0 https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/pulls
Actions https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/actions
Projects 0 https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/projects
Security 0 https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/security
Insights https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/pulse
Code https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial
Issues https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/issues
Pull requests https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/pulls
Actions https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/actions
Projects https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/projects
Security https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/security
Insights https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/pulse
Brancheshttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/branches
Tagshttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tags
https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/branches
https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tags
87 Commitshttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/commits/master/
https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/commits/master/
ABhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/AB
ABhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/AB
ABChttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/ABC
ABChttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/ABC
ABphttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/ABp
ABphttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/ABp
BABhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/BAB
BABhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/BAB
CBNGLhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/CBNGL
CBNGLhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/CBNGL
LargerModelshttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/LargerModels
LargerModelshttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/LargerModels
SBMLhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/SBML
SBMLhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/SBML
SynDeghttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/SynDeg
SynDeghttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/SynDeg
Vizhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/Viz
Vizhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/Viz
imageshttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/images
imageshttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/tree/master/images
README.mdhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/README.md
READMEhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial
https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial#bionetgen-tutorial
short videohttps://www.youtube.com/watch?v=MWoY5iaC8W0&t=1s
https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial#basic-structure-and-syntax
ABC.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/ABC/ABC.bngl
ABC_scan.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/ABC/ABC_scan.bngl
ABC_ssa.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/ABC/ABC_ssa.bngl
LV.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/ABC/LV.bngl
SIR.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/ABC/SIR.bngl
https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial#using-structured-molecules-and-rules-binding
AB.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/AB/AB.bngl
BAB.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/BAB/BAB.bngl
BAB_scan.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/BAB/BAB_scan.bngl
https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial#using-structured-molecules-and-rules-component-state-change
ABp.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/ABp/ABp.bngl
ABp_approx.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/ABp/ABp_approx.bngl
More advanced models of substrate modification dynamicshttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/ABp/AdvancedModels.md
https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial#modeling-synthesis-and-degradation
birth-death.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/SynDeg/birth-death.bngl
toggle.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/SynDeg/toggle.bngl
ComplexDegradation.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/SynDeg/ComplexDegradation.bngl
More advanced models of gene regulationhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/SynDeg/AdvancedModels.md
https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial#ligand-receptor-binding-models
Quick Reference Guidehttps://github.com/RuleWorld/bionetgen/blob/master/docs/QRG-30Mar2016.pdf
LR.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/CBNGL/LR.bngl
LR_comp.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/CBNGL/LR_comp.bngl
LRR.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/CBNGL/LRR.bngl
yEdhttps://www.yworks.com/yed
LRR_comp.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/CBNGL/LRR_comp.bngl
BLBR.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/CBNGL/BLBR.bngl
https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial#models-for-cellblender
organelle_transport.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/CBNGL/organelle_transport.bngl
organelle_transport_struct.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/CBNGL/organelle_transport_struct.bngl
LV_comp.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/CBNGL/LV_comp.bngl
https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial#cbngl-model-of-signalingtranscription-with-negative-feedback
cBNGL_simple.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/CBNGL/cBNGL_simple.bngl
https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial#visualization-examples
visualize.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/Viz/visualize.bngl
FceRI_viz.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/Viz/FceRI_viz.bngl
herehttps://doi.org/10.1371/journal.pcbi.1005857
S2 Appendix. Tutorialhttps://doi.org/10.1371/journal.pcbi.1005857.s007
https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial#sbml-importer
translateSBML.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/SBML/translateSBML.bngl
herehttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/SBML
biomodels.nethttp://biomodels.net
https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial#larger-models
FceRI_ji.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/LargerModels/FceRI_ji.bngl
egfr_simple.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/LargerModels/egfr_simple.bngl
Chylek_library.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/LargerModels/Chylek_library.bngl
herehttps://www.frontiersin.org/articles/10.3389/fimmu.2014.00172/full
Creamer_2012.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/LargerModels/Creamer_2012.bngl
herehttps://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0509-6-107
Suderman_2013.bnglhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/LargerModels/Suderman_2013.bngl
herehttp://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003278
https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/blob/master/images/Flagman-smaller.gif
Readme https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial#readme-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial
Activityhttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/activity
Custom propertieshttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/custom-properties
15 starshttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/stargazers
21 watchinghttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/watchers
3 forkshttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FRuleWorld%2FBNGTutorial&report=RuleWorld+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/RuleWorld/packages?repo_name=BNGTutorial
Contributors 2https://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/RuleWorld/BNGTutorial
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.