René's URL Explorer Experiment

Title: GitHub - Rostlab/ProtTrans: ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

Open Graph Title: GitHub - Rostlab/ProtTrans: ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

X Title: GitHub - Rostlab/ProtTrans: ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

Description: ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models. - Rostlab/ProtTrans

Open Graph Description: ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models. - Rost...

X Description: ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models. - Rost...

Mail addresses
assistant@rostlab.org?subject=[GitHub]ProtTrans

Opengraph URL: https://github.com/Rostlab/ProtTrans

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	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans/commits/master/
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Embedding	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans/tree/master/Embedding
Embedding	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans/tree/master/Embedding
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README.md	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans/blob/master/README.md
README.md	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans/blob/master/README.md
README	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans
License	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans
	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#prottrans
ProtTrans	https://github.com/agemagician/ProtTrans/
ProtTrans: cracking the language of life’s code through self-supervised deep learning and high performance computing	https://doi.org/10.1109/TPAMI.2021.3095381
	https://github.com/agemagician/ProtTrans/raw/master/images/transformers_attention.png
Accelerate SARS-CoV-2 research with transfer learning using pre-trained language modeling models	https://covid19-hpc-consortium.org/projects/5ed56e51a21132007ebf57bf
	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#table-of-contents
⌛️ Models Availability	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#models
⌛️ Dataset Availability	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#datasets
🚀 Usage	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#usage
🧬 Feature Extraction (FE)	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#feature-extraction
💥 Fine Tuning (FT)	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#fine-tuning
🧠 Prediction	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#prediction
⚗️ Protein Sequences Generation	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#protein-generation
🧐 Visualization	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#visualization
📈 Benchmark	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#benchmark
📊 Original downstream Predictions	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#results
📊 Followup use-cases	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#inaction
📊 Comparisons to other tools	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#comparison
❤️ Community and Contributions	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#community
📫 Have a question?	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#question
🤝 Found a bug?	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#bug
✅ Requirements	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#requirements
🤵 Team	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#team
💰 Sponsors	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#sponsors
📘 License	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#license
✏️ Citation	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#citation
	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#️-models-availability
Download	https://huggingface.co/Rostlab/prot_t5_xl_uniref50/tree/main
Download	https://zenodo.org/record/4644188
Colab	https://colab.research.google.com/drive/1TUj-ayG3WO52n5N50S7KH9vtt6zRkdmj?usp=sharing
Download	https://huggingface.co/Rostlab/prot_t5_xl_bfd/tree/main
Download	https://zenodo.org/record/4633924
Download	https://huggingface.co/Rostlab/prot_t5_xxl_uniref50/tree/main
Download	https://zenodo.org/record/4652717
Download	https://huggingface.co/Rostlab/prot_t5_xxl_bfd/tree/main
Download	https://zenodo.org/record/4635302
Download	https://huggingface.co/Rostlab/prot_bert_bfd/tree/main
Download	https://zenodo.org/record/4633647
Download	https://huggingface.co/Rostlab/prot_bert/tree/main
Download	https://zenodo.org/record/4633691
Download	https://huggingface.co/Rostlab/prot_albert/tree/main
Download	https://zenodo.org/record/4633687
Download	https://huggingface.co/Rostlab/prot_xlnet/tree/main
Download	https://zenodo.org/record/4633987
Download	https://huggingface.co/Rostlab/prot_electra_generator_bfd/tree/main
Download	https://zenodo.org/record/4633813
Download	https://huggingface.co/Rostlab/prot_electra_discriminator_bfd/tree/main
Download	https://zenodo.org/record/4633717
	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#️-datasets-availability
Download	https://www.dropbox.com/s/g49lb352ij4cnt7/NEW364.csv?dl=1
Download	https://www.dropbox.com/s/98hovta9qjmmiby/Train_HHblits.csv?dl=1
Download	https://www.dropbox.com/s/te0vn0t7ocdkra7/CASP12_HHblits.csv?dl=1
Download	https://www.dropbox.com/s/9mat2fqqkcvdr67/CB513_HHblits.csv?dl=1
Download	https://www.dropbox.com/s/68pknljl9la8ax3/TS115_HHblits.csv?dl=1
Download	https://www.dropbox.com/s/vgdqcl4vzqm9as0/deeploc_per_protein_train.csv?dl=1
Download	https://www.dropbox.com/s/jfzuokrym7nflkp/deeploc_per_protein_test.csv?dl=1
	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#-usage
Embedding Section	https://github.com/agemagician/ProtTrans/tree/master/Embedding
Colab	https://colab.research.google.com/drive/1TUj-ayG3WO52n5N50S7KH9vtt6zRkdmj?usp=sharing
Fine Tuning Section	https://github.com/agemagician/ProtTrans/tree/master/Fine-Tuning
Prediction Section	https://github.com/agemagician/ProtTrans/tree/master/Prediction
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Generate Section	https://github.com/agemagician/ProtTrans/tree/master/Generate
Visualization Section	https://github.com/agemagician/ProtTrans/tree/master/Visualization
Benchmark Section	https://github.com/agemagician/ProtTrans/tree/master/Benchmark
	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#-original-downstream-predictions
predictprotein.org	https://predictprotein.org
predictprotein.org	https://predictprotein.org
	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#-use-cases
Light attention predicts protein location from the language of life	https://doi.org/10.1093/bioadv/vbab035
Web-server	https://embed.protein.properties/
Protein embeddings and deep learning predict binding residues for various ligand classes	https://www.nature.com/articles/s41598-021-03431-4
Embeddings from protein language models predict conservation and variant effects	https://rdcu.be/cD7q5
Contrastive learning on protein embeddings enlightens midnight zone at lightning speed	https://www.biorxiv.org/content/10.1101/2021.11.14.468528v2
Protein language model embeddings for fast, accurate, alignment-free protein structure prediction	https://www.biorxiv.org/content/10.1101/2021.07.31.454572v1.abstract
	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#-comparison-to-other-protein-language-models-plms
use-cases	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#inaction
ESM	https://github.com/facebookresearch/esm
Light-attention	https://academic.oup.com/view-large/figure/321379865/vbab035f2.tif
Light-attention	https://academic.oup.com/view-large/figure/321379865/vbab035f2.tif
ConsEmb	https://rdcu.be/cD7q5
VESPA	https://rdcu.be/cD7q5
VESPA	https://rdcu.be/cD7q5
ProtTucker	https://www.biorxiv.org/content/10.1101/2021.11.14.468528v1
ProtTucker	https://www.biorxiv.org/content/10.1101/2021.11.14.468528v1
bindEmbed21	https://www.nature.com/articles/s41598-021-03431-4
here	https://github.com/agemagician/ProtTrans/blob/master/Embedding/PyTorch/Advanced/ProtT5-XL-UniRef50.ipynb
	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#️-community-and-contributions
	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#-have-a-question
ProtTrans	https://github.com/agemagician/ProtTrans/issues
	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#-found-a-bug
ProtTrans	https://github.com/agemagician/ProtTrans/issues
	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#-requirements
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Transformers	https://github.com/huggingface/transformers
BertViz	https://github.com/jessevig/bertviz
	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans#-team
	https://github.com/agemagician/ProtTrans/blob/master/images/ElnaggarAhmend.jpg?raw=true
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Academic Free License v3.0 License	https://choosealicense.com/licenses/afl-3.0/
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1 fork	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans/forks
Report repository	https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FRostlab%2FProtTrans&report=Rostlab+%28user%29
Releases	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans/releases
1 tags	https://patch-diff.githubusercontent.com/Rostlab/ProtTrans/tags
Packages 0	https://patch-diff.githubusercontent.com/orgs/Rostlab/packages?repo_name=ProtTrans
	https://github.com
Terms	https://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacy	https://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Security	https://github.com/security
Status	https://www.githubstatus.com/
Community	https://github.community/
Docs	https://docs.github.com/
Contact	https://support.github.com?tags=dotcom-footer

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URLs of crawlers that visited me.