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{"@context":"https://schema.org","@type":"DiscussionForumPosting","headline":"Error installing RcppParallel 5.1.7 RcppParallel.so: undefined symbol: ","articleBody":"Good Day!\r\n\r\nRedhat Linux 7.9\r\nR version 4.2.3\r\nRcppParallel 5.1.7\r\ngcc version 4.8\r\n\r\n\r\nWhen installing RcppParallel using the command R CMD INSTALL RcppParallel_5.1.7.tar.gz it fails with below error:\r\n\r\n* installing to library ‘/opt/opensource/R/R-4.2.3/lib64/R/library’\r\n* installing *source* package ‘RcppParallel’ ...\r\n** package ‘RcppParallel’ successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** preparing to configure package 'RcppParallel' ...\r\n*** configured file: 'R/tbb-autodetected.R.in' =\u003e 'R/tbb-autodetected.R'\r\n*** configured file: 'src/Makevars.in' =\u003e 'src/Makevars'\r\n*** configured file: 'src/install.libs.R.in' =\u003e 'src/install.libs.R'\r\n** finished configure for package 'RcppParallel'\r\n** libs\r\n(tbb) Building TBB using bundled sources ...\r\nmake[1]: Entering directory `/tmp/RtmpLGkjWv/R.INSTALL711a1df2519e/RcppParallel/src/tbb/src'\r\nOS: linux\r\narch=intel64\r\ncompiler=gcc\r\nruntime=cc4.8.5_libc2.17_kernel3.10.0\r\ntbb_build_prefix=linux_intel64_gcc_cc4.8.5_libc2.17_kernel3.10.0\r\nwork_dir=/tmp/RtmpLGkjWv/R.INSTALL711a1df2519e/RcppParallel/src/build/linux_intel64_gcc_cc4.8.5_libc2.17_kernel3.10.0_release\r\nmake[1]: Leaving directory `/tmp/RtmpLGkjWv/R.INSTALL711a1df2519e/RcppParallel/src/tbb/src'\r\nmake[1]: Entering directory `/tmp/RtmpLGkjWv/R.INSTALL711a1df2519e/RcppParallel/src/tbb/src'\r\nCreated ../build/lib_release directory\r\nmake -C \"../build/lib_release\"  -r -f ../../build/Makefile.tbb cfg=release\r\nmake[2]: Entering directory `/tmp/RtmpLGkjWv/R.INSTALL711a1df2519e/RcppParallel/src/tbb/build/lib_release'\r\n../../build/Makefile.tbb:28: CONFIG: cfg=release arch=intel64 compiler=gcc target=linux runtime=cc4.8.5_libc2.17_kernel3.10.0\r\ng++ -I../inst/include  -o concurrent_hash_map.o -c -MMD -DDO_ITT_NOTIFY -O2 -DUSE_PTHREAD -m64 -mrtm  -fpic  -D__TBB_BUILD=1 -Wall -Wextra  -g -O2 -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/concurrent_hash_map.cpp\r\nIn file included from ../../include/tbb/concurrent_hash_map.h:26:0,\r\n                 from ../../src/tbb/concurrent_hash_map.cpp:17:\r\n../../include/tbb/compat/iterator.h:19:11: error: expected nested-name-specifier before ‘iterator_category’\r\n     using iterator_category = Category;\r\n           ^\r\n../../include/tbb/compat/iterator.h:19:11: error: using-declaration for non-member at class scope\r\n../../include/tbb/compat/iterator.h:19:29: error: expected ‘;’ before ‘=’ token\r\n     using iterator_category = Category;\r\n                             ^\r\n../../include/tbb/compat/iterator.h:19:29: error: expected unqualified-id before ‘=’ token\r\n../../include/tbb/compat/iterator.h:20:11: error: expected nested-name-specifier before ‘value_type’\r\n     using value_type = T;\r\n           ^\r\n../../include/tbb/compat/iterator.h:20:11: error: using-declaration for non-member at class scope\r\n../../include/tbb/compat/iterator.h:20:22: error: expected ‘;’ before ‘=’ token\r\n     using value_type = T;\r\n                      ^\r\n../../include/tbb/compat/iterator.h:20:22: error: expected unqualified-id before ‘=’ token\r\n../../include/tbb/compat/iterator.h:21:11: error: expected nested-name-specifier before ‘difference_type’\r\n     using difference_type = Distance;\r\n           ^\r\n../../include/tbb/compat/iterator.h:21:11: error: using-declaration for non-member at class scope\r\n../../include/tbb/compat/iterator.h:21:27: error: expected ‘;’ before ‘=’ token\r\n     using difference_type = Distance;\r\n                           ^\r\n../../include/tbb/compat/iterator.h:21:27: error: expected unqualified-id before ‘=’ token\r\n../../include/tbb/compat/iterator.h:22:11: error: expected nested-name-specifier before ‘pointer’\r\n     using pointer = Pointer;\r\n           ^\r\n../../include/tbb/compat/iterator.h:22:11: error: using-declaration for non-member at class scope\r\n../../include/tbb/compat/iterator.h:22:19: error: expected ‘;’ before ‘=’ token\r\n     using pointer = Pointer;\r\n                   ^\r\n../../include/tbb/compat/iterator.h:22:19: error: expected unqualified-id before ‘=’ token\r\n../../include/tbb/compat/iterator.h:23:11: error: expected nested-name-specifier before ‘reference’\r\n     using reference = Reference;\r\n           ^\r\n../../include/tbb/compat/iterator.h:23:11: error: using-declaration for non-member at class scope\r\n../../include/tbb/compat/iterator.h:23:21: error: expected ‘;’ before ‘=’ token\r\n     using reference = Reference;\r\n                     ^\r\n../../include/tbb/compat/iterator.h:23:21: error: expected unqualified-id before ‘=’ token\r\nmake[2]: *** [concurrent_hash_map.o] Error 1\r\nmake[2]: Leaving directory `/tmp/RtmpLGkjWv/R.INSTALL711a1df2519e/RcppParallel/src/tbb/build/lib_release'\r\nmake[1]: *** [tbb_release] Error 2\r\nmake[1]: Leaving directory `/tmp/RtmpLGkjWv/R.INSTALL711a1df2519e/RcppParallel/src/tbb/src'\r\ng++ -std=gnu++11 -I\"/opt/opensource/R/R-4.2.3/lib64/R/include\" -DNDEBUG -I../inst/include  -I/usr/local/include  -std=gnu++11 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fpic  -g -O2  -c init.cpp -o init.o\r\ng++ -std=gnu++11 -I\"/opt/opensource/R/R-4.2.3/lib64/R/include\" -DNDEBUG -I../inst/include  -I/usr/local/include  -std=gnu++11 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fpic  -g -O2  -c options.cpp -o options.o\r\ng++ -std=gnu++11 -shared -L/opt/opensource/R/R-4.2.3/lib64/R/lib -L/usr/local/lib64 -o RcppParallel.so init.o options.o -L/opt/opensource/R/R-4.2.3/lib64/R/lib -lR\r\ninstalling via 'install.libs.R' to /opt/opensource/R/R-4.2.3/lib64/R/library/00LOCK-RcppParallel/00new/RcppParallel\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\nError: package or namespace load failed for ‘RcppParallel’:\r\n .onLoad failed in loadNamespace() for 'RcppParallel', details:\r\n  call: dyn.load(file, DLLpath = DLLpath, ...)\r\n  error: unable to load shared object '/opt/opensource/R/R-4.2.3/lib64/R/library/00LOCK-RcppParallel/00new/RcppParallel/libs/RcppParallel.so':\r\n  /opt/opensource/R/R-4.2.3/lib64/R/library/00LOCK-RcppParallel/00new/RcppParallel/libs/RcppParallel.so: undefined symbol: _ZN3tbb10interface58internal9task_base7destroyERNS_4taskE\r\nError: loading failed\r\nExecution halted\r\nERROR: loading failed\r\n* removing ‘/opt/opensource/R/R-4.2.3/lib64/R/library/RcppParallel’\r\n\r\n\r\n\r\nAs noticed as well, the folder path and file 00LOCK-RcppParallel/00new/RcppParallel/libs/RcppParallel.so was not created\r\nAppreciate any suggestions.\r\n\r\nThanks\r\n","author":{"url":"https://github.com/tlkoh0727","@type":"Person","name":"tlkoh0727"},"datePublished":"2023-05-26T02:58:11.000Z","interactionStatistic":{"@type":"InteractionCounter","interactionType":"https://schema.org/CommentAction","userInteractionCount":1},"url":"https://github.com/202/RcppParallel/issues/202"}