René's URL Explorer Experiment


Title: GitHub - ProteinDesignLab/protein_seq_des: Code for our paper "Protein sequence design with a learned potential"

Open Graph Title: GitHub - ProteinDesignLab/protein_seq_des: Code for our paper "Protein sequence design with a learned potential"

X Title: GitHub - ProteinDesignLab/protein_seq_des: Code for our paper "Protein sequence design with a learned potential"

Description: Code for our paper "Protein sequence design with a learned potential" - ProteinDesignLab/protein_seq_des

Open Graph Description: Code for our paper "Protein sequence design with a learned potential" - ProteinDesignLab/protein_seq_des

X Description: Code for our paper "Protein sequence design with a learned potential" - ProteinDesignLab/protein_seq_des

Opengraph URL: https://github.com/ProteinDesignLab/protein_seq_des

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:5308d63c-1f2e-579d-bf44-c3380b318d51
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idE42C:9FD02:65A9CA:8BDD9C:698E08F0
html-safe-noncedfef46232a27b71d1676e360261ee8a78243fa548fb7cf6a6032fe3d166a81d5
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJFNDJDOjlGRDAyOjY1QTlDQTo4QkREOUM6Njk4RTA4RjAiLCJ2aXNpdG9yX2lkIjoiNjk0NzY2MzAzOTY1MTc3Njc1MiIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac6744929ef9cde943fb9d8e9e6582d3ba7ba90927ffd5449221d573b6cfb89b56
hovercard-subject-tagrepository:303550500
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/ProteinDesignLab/protein_seq_des
twitter:imagehttps://opengraph.githubassets.com/ad36b3dc3d26eafa223477ff2dfb9cf3ed553bcbb12e738eff488a7fd9dfc1ef/ProteinDesignLab/protein_seq_des
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/ad36b3dc3d26eafa223477ff2dfb9cf3ed553bcbb12e738eff488a7fd9dfc1ef/ProteinDesignLab/protein_seq_des
og:image:altCode for our paper "Protein sequence design with a learned potential" - ProteinDesignLab/protein_seq_des
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None70a88bfe6d9639434ae7f5a46d15c336b8884978a51526bc55fc57d848f1e3c1
turbo-cache-controlno-preview
go-importgithub.com/ProteinDesignLab/protein_seq_des git https://github.com/ProteinDesignLab/protein_seq_des.git
octolytics-dimension-user_id34671708
octolytics-dimension-user_loginProteinDesignLab
octolytics-dimension-repository_id303550500
octolytics-dimension-repository_nwoProteinDesignLab/protein_seq_des
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id303550500
octolytics-dimension-repository_network_root_nwoProteinDesignLab/protein_seq_des
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release2519b16db5550494a653f9a8837c14ef7df80804
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FProteinDesignLab%2Fprotein_seq_des
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FProteinDesignLab%2Fprotein_seq_des
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=ProteinDesignLab%2Fprotein_seq_des
Reloadhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des
Reloadhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des
Reloadhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des
ProteinDesignLab https://patch-diff.githubusercontent.com/ProteinDesignLab
protein_seq_deshttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FProteinDesignLab%2Fprotein_seq_des
Fork 24 https://patch-diff.githubusercontent.com/login?return_to=%2FProteinDesignLab%2Fprotein_seq_des
Star 82 https://patch-diff.githubusercontent.com/login?return_to=%2FProteinDesignLab%2Fprotein_seq_des
BSD-3-Clause license https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/LICENSE
82 stars https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/stargazers
24 forks https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/forks
Branches https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/branches
Tags https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/tags
Activity https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FProteinDesignLab%2Fprotein_seq_des
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FProteinDesignLab%2Fprotein_seq_des
Code https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des
Issues 0 https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/issues
Pull requests 0 https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/pulls
Actions https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/actions
Projects 0 https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/projects
Security 0 https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/security
Insights https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/pulse
Code https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des
Issues https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/issues
Pull requests https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/pulls
Actions https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/actions
Projects https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/projects
Security https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/security
Insights https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/pulse
Brancheshttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/branches
Tagshttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/tags
https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/branches
https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/tags
67 Commitshttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/commits/master/
https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/commits/master/
commonhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/tree/master/common
commonhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/tree/master/common
imgshttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/tree/master/imgs
imgshttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/tree/master/imgs
pdbshttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/tree/master/pdbs
pdbshttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/tree/master/pdbs
seq_deshttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/tree/master/seq_des
seq_deshttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/tree/master/seq_des
txthttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/tree/master/txt
txthttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/tree/master/txt
.DS_Storehttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/.DS_Store
.DS_Storehttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/.DS_Store
LICENSEhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/README.md
SETUP.mdhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/SETUP.md
SETUP.mdhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/SETUP.md
load_and_save_bb_coords.pyhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/load_and_save_bb_coords.py
load_and_save_bb_coords.pyhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/load_and_save_bb_coords.py
load_and_save_coords.pyhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/load_and_save_coords.py
load_and_save_coords.pyhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/load_and_save_coords.py
requirements.txthttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/requirements.txt
requirements.txthttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/requirements.txt
run.pyhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/run.py
run.pyhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/run.py
seq_des_info.pdfhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/seq_des_info.pdf
seq_des_info.pdfhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/seq_des_info.pdf
train_autoreg_chi.pyhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/train_autoreg_chi.py
train_autoreg_chi.pyhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/train_autoreg_chi.py
train_autoreg_chi_baseline.pyhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/train_autoreg_chi_baseline.py
train_autoreg_chi_baseline.pyhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/train_autoreg_chi_baseline.py
READMEhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des
BSD-3-Clause licensehttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des
https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des#protein-sequence-design-with-a-learned-potential
[biorxiv]https://www.biorxiv.org/content/10.1101/2020.01.06.895466v1
[cite]https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des#citation
https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/blob/master/imgs/tim.gif
https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des#requirements
PyTorchhttps://pytorch.org
PyRosetta4http://www.pyrosetta.org/dow
herehttps://drive.google.com/file/d/1X66RLbaA2-qTlJLlG9TI53cao8gaKnEt/view?usp=sharing
herehttps://github.com/nanand2/protein_seq_des/blob/master/SETUP.md
https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des#design
[this section]https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des#running-design
https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des#generating-data
herehttps://drive.google.com/drive/folders/1MD-tu32SoYtZGag04HwntuxcuOnYPDXs
https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des#training-the-models
herehttps://drive.google.com/file/d/1cHoyeI0H_Jo9bqgFH4z0dfx2s9as9Jp1/view?usp=sharing
https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des#running-design
belowhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des#design-parameters
https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des#monitoring-metrics
https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des#design-parameters
resfilehttps://github.com/ProteinDesignLab/protein_seq_des/tree/master/seq_des/util
https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des#citation
Readme https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des#readme-ov-file
BSD-3-Clause license https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des#BSD-3-Clause-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des
Activityhttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/activity
Custom propertieshttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/custom-properties
82 starshttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/stargazers
2 watchinghttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/watchers
24 forkshttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FProteinDesignLab%2Fprotein_seq_des&report=ProteinDesignLab+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/ProteinDesignLab/packages?repo_name=protein_seq_des
Contributors 4https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des
Python 100.0% https://patch-diff.githubusercontent.com/ProteinDesignLab/protein_seq_des/search?l=python
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.