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Title: GitHub - PoisonAlien/trackplot: Generate IGV style locus tracks from bigWig files in R

Open Graph Title: GitHub - PoisonAlien/trackplot: Generate IGV style locus tracks from bigWig files in R

X Title: GitHub - PoisonAlien/trackplot: Generate IGV style locus tracks from bigWig files in R

Description: Generate IGV style locus tracks from bigWig files in R - GitHub - PoisonAlien/trackplot: Generate IGV style locus tracks from bigWig files in R

Open Graph Description: Generate IGV style locus tracks from bigWig files in R - GitHub - PoisonAlien/trackplot: Generate IGV style locus tracks from bigWig files in R

X Description: Generate IGV style locus tracks from bigWig files in R - GitHub - PoisonAlien/trackplot: Generate IGV style locus tracks from bigWig files in R

Opengraph URL: https://github.com/PoisonAlien/trackplot

X: @github

direct link

Domain: patch-diff.githubusercontent.com

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og:image:altGenerate IGV style locus tracks from bigWig files in R - GitHub - PoisonAlien/trackplot: Generate IGV style locus tracks from bigWig files in R
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READMEhttps://patch-diff.githubusercontent.com/PoisonAlien/trackplot
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#trackplot---fast-and-easy-visualisation-of-bigwig-files-in-r
https://github.com/poisonalien/trackplot/issues
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#introduction
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#installation
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#features
bwtoolhttps://github.com/CRG-Barcelona/bwtool
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https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#dependencies
data.tablehttps://cran.r-project.org/web/packages/data.table/index.html
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compilation instructionshttps://gist.github.com/PoisonAlien/e19b482ac6146bfb03142a0de1c4fbc8
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#citation
trackplothttps://academic.oup.com/bioinformaticsadvances/article/4/1/vbae031/7616126
bwtoolhttps://academic.oup.com/bioinformatics/article/30/11/1618/282756
38476298https://pubmed.ncbi.nlm.nih.gov/38476298/
24489365https://pubmed.ncbi.nlm.nih.gov/24489365/
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#usage
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#trackplots
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#step-1-extract-signal-from-bigwig-files
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#step-2-plot
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#basic-plot
https://private-user-images.githubusercontent.com/8164062/256538042-b50457b0-6623-47f6-b00f-f6e0de5a4808.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.1JkXh-bW3dUzDrHWMqNYQ1wDZPWRYKK6VKKZ_d8zlDI
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#add-cytoband-and-change-colors-for-each-track
https://private-user-images.githubusercontent.com/8164062/256538511-a0911998-aae8-4de1-96f5-18e278d19d80.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.uPhIFVwGqOT6fgdBtzRyR4uSyjX85Yx7L5Vp5IaLIBo
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#collapse-all-tracks-into-a-single-track
https://private-user-images.githubusercontent.com/8164062/380729378-d286f159-8950-4209-a985-fa3ba7103c53.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.QmocuStvKhKvm5aDB7586vSBr8TP9BntEAoT4b6j2vE
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#heighilight-regions-of-interest-any-bed-files-would-do
https://private-user-images.githubusercontent.com/8164062/256533166-2531af5e-7200-478e-aa90-4ff5f537f57a.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.MjK3mVHaSfjL_IyAfeYoZE9CzLV-Emfl3Y-u4gwC8HA
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#add-some-chromhmm-tracks-to-the-bottom
examplehttps://github.com/PoisonAlien/trackplot/blob/master/inst/extdata/narrowpeak/H1_chromHMM.bed
herehttps://genome.ucsc.edu/cgi-bin/hgTrackUi?g=wgEncodeBroadHmm&db=hg19
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https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#add-some-chromhmm-tracks-from-ucsc
https://private-user-images.githubusercontent.com/8164062/256540245-fecf7ab1-44cb-4308-b3f4-d8ca03cdd15d.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.Qj823hfdk5FTrkJHejz7HuQ70HU2faO7_39z1pc8wVc
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#re-organize-tracks
https://private-user-images.githubusercontent.com/8164062/304753108-11c9fe9b-0292-40af-8197-7f20a5275f01.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.b_zegmgfY0RMO0QW8Rp2rYa0vpqR72GGE-SHL1eU7Ts
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#narrowpeaks-and-broadpeaks
narrowPeakhttps://genome.ucsc.edu/FAQ/FAQformat.html#format12
broadPeakhttps://genome.ucsc.edu/FAQ/FAQformat.html#format13
UCSC conventionhttps://genome.ucsc.edu/FAQ/FAQformat.html#format1
https://private-user-images.githubusercontent.com/8164062/256549538-fa3999fd-ab7f-4617-a43e-d3cac7f3a3b3.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.05xsYYq4cRJIafaRS9EQ_LPWgjBtcK6XGxFGCR-1glw
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#profileplots
macbook Prohttps://support.apple.com/kb/sp715?locale=en_GB
GSE99183https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE99183
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#refseq-transcripts
https://private-user-images.githubusercontent.com/8164062/262592382-bd26cdac-6f87-44ed-b41c-685454c6d28c.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.cTpFgvG9jYCAyI10uUhrUN7Bos3U4PJP7zNEpcqoTP0
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#custom-bed-regions
https://private-user-images.githubusercontent.com/8164062/262592608-94c1d728-e38c-418a-8469-ba50c42dc295.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.qD38cFaxRJAWr5yJ2agMdoyLRZAI7ackqKt2Lyze5j0
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#heatmap
https://private-user-images.githubusercontent.com/8164062/262592735-a82eedc8-a3f3-4439-a005-13242fce7929.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.zr5uambmFNT--uEI4LBOaeuCzUerbrJCs_ymt-a8_J8
Biostars threadhttps://www.biostars.org/p/475853/
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#caveat
https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#acknowledgements
Joschka Heyhttps://github.com/HeyLifeHD
locus https://patch-diff.githubusercontent.com/topics/locus
ucsc-browser https://patch-diff.githubusercontent.com/topics/ucsc-browser
bigwigs https://patch-diff.githubusercontent.com/topics/bigwigs
igv-like https://patch-diff.githubusercontent.com/topics/igv-like
Readme https://patch-diff.githubusercontent.com/PoisonAlien/trackplot#readme-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/PoisonAlien/trackplot
Activityhttps://patch-diff.githubusercontent.com/PoisonAlien/trackplot/activity
178 starshttps://patch-diff.githubusercontent.com/PoisonAlien/trackplot/stargazers
1 watchinghttps://patch-diff.githubusercontent.com/PoisonAlien/trackplot/watchers
18 forkshttps://patch-diff.githubusercontent.com/PoisonAlien/trackplot/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FPoisonAlien%2Ftrackplot&report=PoisonAlien+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/PoisonAlien/trackplot/releases
Packages 0https://patch-diff.githubusercontent.com/users/PoisonAlien/packages?repo_name=trackplot
R 100.0% https://patch-diff.githubusercontent.com/PoisonAlien/trackplot/search?l=r
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

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URLs of crawlers that visited me.