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Title: GitHub - PennLINC/DevProps: developmental cortical propagation detection + analyses

Open Graph Title: GitHub - PennLINC/DevProps: developmental cortical propagation detection + analyses

X Title: GitHub - PennLINC/DevProps: developmental cortical propagation detection + analyses

Description: developmental cortical propagation detection + analyses - PennLINC/DevProps

Open Graph Description: developmental cortical propagation detection + analyses - PennLINC/DevProps

X Description: developmental cortical propagation detection + analyses - PennLINC/DevProps

Opengraph URL: https://github.com/PennLINC/DevProps

X: @github

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Domain: patch-diff.githubusercontent.com

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scriptshttps://patch-diff.githubusercontent.com/PennLINC/DevProps/tree/main/scripts
.gitignorehttps://patch-diff.githubusercontent.com/PennLINC/DevProps/blob/main/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/PennLINC/DevProps/blob/main/.gitignore
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README.mdhttps://patch-diff.githubusercontent.com/PennLINC/DevProps/blob/main/README.md
READMEhttps://patch-diff.githubusercontent.com/PennLINC/DevProps
https://patch-diff.githubusercontent.com/PennLINC/DevProps#development-of-propagations-replication-guide
https://patch-diff.githubusercontent.com/PennLINC/DevProps#1-pre-processing
preProc_PW.mhttps://github.com/PennLINC/PWs/blob/main/scripts/preProc_PW.m
downsample_TS.shhttps://github.com/PennLINC/PWs/blob/main/scripts/downsample_TSfs4.sh
OpFl_Sph_CompVer.mhttps://github.com/PennLINC/PWs/blob/main/scripts/OpFl_Sph_CompVer.m
PGG_AngDistCalc.mhttps://github.com/PennLINC/PWs/blob/main/scripts/PGG_AngDistCalc.m
mask_mw_faceshttps://github.com/PennLINC/PWs/blob/main/scripts/mask_mw_faces_4.m
https://patch-diff.githubusercontent.com/PennLINC/DevProps#note-1-separate-processing-stream-exists-for-carit-data-should-be-exactly-equivalent-but-have-_c-after-script-names-to-differentiate
herehttps://github.com/PennLINC/PWs/blob/main/scripts/run_OpFl_Sph_CompVer.sh
herehttps://github.com/PennLINC/PWs/blob/main/scripts/run_PGG_AngDistCalc4_CompVer.sh
https://patch-diff.githubusercontent.com/PennLINC/DevProps#note-2-opfl_sph-and-pgg_angdistcalc-are-run-as-compiled-progams-more-specifically-from-here-and-here-respectively-they-are-compiled-directly-from-the-linked-files-but-note-the-scripts-used-for-large-sge-submissions-are-derived-from-those-linked-expect-non-compiled-versions-to-run-3-5-times-slower
https://patch-diff.githubusercontent.com/PennLINC/DevProps#21-reference-map-feature-extraction
downsample_gPG4.shhttps://github.com/PennLINC/PWs/blob/main/scripts/downsample_gPG4.sh
PGfuncgii_2_mat.mhttps://github.com/PennLINC/PWs/blob/main/scripts/PGfuncgii_2_mat.m
https://patch-diff.githubusercontent.com/PennLINC/DevProps#22-reference-map-spinning--feature-extraction-prep-for-spatial-null
spin testhttps://github.com/spin-test/spin-test
SpinPG.mhttps://github.com/PennLINC/PWs/blob/main/scripts/SpinPG.m
AggSpins_TakeGrad.mhttps://github.com/PennLINC/PWs/blob/main/scripts/AggSpins_TakeGrad.m
https://patch-diff.githubusercontent.com/PennLINC/DevProps#31-spatial-nulls
the dip statistichttps://github.com/diazlab/chance/blob/master/hartigansdiptest.m
this paperhttps://www.jstor.org/stable/2347485?seq=1
herehttps://github.com/PennLINC/PWs/blob/main/scripts/PGG_AngDistCalc_snull_CompVer.m
scripthttps://github.com/PennLINC/PWs/blob/main/scripts/preProc_PW2.m
this scripthttps://github.com/PennLINC/PWs/blob/main/scripts/NullPlotting.Rmd
https://patch-diff.githubusercontent.com/PennLINC/DevProps#32-temporal-nulls
one scripthttps://github.com/PennLINC/PWs/blob/main/scripts/tnull_comb_CompVer.m
https://patch-diff.githubusercontent.com/PennLINC/DevProps#41-extract-directional-info-from-opflow-output
Extract_BUTD_ResultantVecs.mhttps://github.com/PennLINC/PWs/blob/main/scripts/Extract_BUTD_ResultantVecs.m
Extract_BUTD_ResultantVecs_c.mhttps://github.com/PennLINC/PWs/blob/main/scripts/Extract_BUTD_ResultantVecs_c.m
Viz_VecFields.mhttps://github.com/PennLINC/PWs/blob/main/scripts/Viz_VecFields.m
https://patch-diff.githubusercontent.com/PennLINC/DevProps#42-group-level-aggregation-and-map-visualization
aggregate_OpFlDistrModes.mhttps://github.com/PennLINC/PWs/blob/main/scripts/aggregate_OpFlDistrModes.m
Vis_FaceVec.m)https://github.com/PennLINC/PWs/blob/main/scripts/Vis_FaceVec.m
https://patch-diff.githubusercontent.com/PennLINC/DevProps#5-task-effects
BUTD_to_Rformat_c.mhttps://github.com/PennLINC/PWs/blob/main/scripts/BUTD_to_Rformat_c.m
lefthttps://github.com/PennLINC/PWs/blob/main/scripts/facewise_ttest_L.R
righthttps://github.com/PennLINC/PWs/blob/main/scripts/facewise_ttest_R.R
FDR_facewise_t.Rhttps://github.com/PennLINC/PWs/blob/main/scripts/FDR_facewise_t.R
scripthttps://github.com/PennLINC/PWs/blob/main/scripts/Group_level_analysis.rmd
https://patch-diff.githubusercontent.com/PennLINC/DevProps#61-age-effects-whole-cortex
Bin_And_Aggregate_BuProp_180.mhttps://github.com/PennLINC/PWs/blob/e9dafb2118b3814b971d74d9cab4c35c51916aa2/scripts/Bin_And_Aggregate_BuProp_180.m
this scripthttps://github.com/PennLINC/PWs/blob/main/scripts/Group_level_analysis.rmd
this markdownhttps://github.com/PennLINC/PWs/blob/main/scripts/Group_level_analysis.md
https://patch-diff.githubusercontent.com/PennLINC/DevProps#62-age-effects-mass-univariate
BUTD_to_Rformat.mhttps://github.com/PennLINC/PWs/blob/main/scripts/BUTD_to_Rformat.m
Lhttps://github.com/PennLINC/PWs/blob/main/scripts/facewise_stats_L.R
Rhttps://github.com/PennLINC/PWs/blob/main/scripts/facewise_stats_R.R
FDR_facewise.Rhttps://github.com/PennLINC/PWs/blob/main/scripts/FDR_facewise.R
https://patch-diff.githubusercontent.com/PennLINC/DevProps#63-age-effects-angular-distributions
this scripthttps://github.com/PennLINC/PWs/blob/e2258b09c2ae78bc3a998faa59a283723d3cb085/scripts/Bin_And_Aggregate_PGGDistribution_180_permSubjs.m
scripthttps://github.com/PennLINC/PWs/blob/main/scripts/Group_level_analysis.rmd
https://patch-diff.githubusercontent.com/PennLINC/DevProps#7-simulated-posterior-anterior-data
syn_wave_prop1https://github.com/PennLINC/PWs/blob/main/scripts/syn_wave_prop1.m
Laumann et al., 2017https://cpb-us-w2.wpmucdn.com/sites.wustl.edu/dist/7/1080/files/2018/06/simulate_BOLD_timecourse_func_v2-1eoyny0.m
downsample_SIM_TSfs4.shhttps://github.com/PennLINC/PWs/blob/main/scripts/downsample_SIM_TSfs4.sh
OpFl_Sph_fs4_SIMhttps://github.com/PennLINC/PWs/blob/main/scripts/OpFl_Sph_fs4_SIM.m
APfuncgii_2_mat.mhttps://github.com/PennLINC/PWs/blob/main/scripts/APfuncgii_2_mat.m
APG_AngDistCalc4_CompVer.mhttps://github.com/PennLINC/PWs/blob/main/scripts/APG_AngDistCalc4_CompVer.m
mask_mw_faces_4_aphttps://github.com/PennLINC/PWs/blob/main/scripts/mask_mw_faces_4_ap.m
lines 157-191https://github.com/PennLINC/PWs/blob/main/scripts/opfl_vis.Rmd
https://patch-diff.githubusercontent.com/PennLINC/DevProps#81-midnight-scan-club-replication-preprocessing
preProc_PWs_mschttps://github.com/PennLINC/PWs/blob/main/scripts/preProc_PW_msc.m
apply_motion_mask_mschttps://github.com/PennLINC/PWs/blob/main/scripts/apply_motion_mask_msc.m
downsample_TSfs4_mschttps://github.com/PennLINC/PWs/blob/main/scripts/downsample_TSfs4_msc.sh
scripthttps://github.com/PennLINC/PWs/blob/main/scripts/OpFl_Sph_fs4_runSweep_msc.m
scripthttps://github.com/PennLINC/PWs/blob/main/scripts/Concat_mscFl.m
https://patch-diff.githubusercontent.com/PennLINC/DevProps#82-midnight-scan-club-replication-post-processing
This scripthttps://github.com/PennLINC/PWs/blob/main/scripts/PGG_AngDistCalc4_CompVer_msc.m
comparing angular sitances among msc optical flow output to null models (snull)https://github.com/PennLINC/PWs/blob/main/scripts/PGG_AngDistCalc_snull_CompVer_msc.m
run as its c-compiled versionhttps://github.com/PennLINC/PWs/blob/main/scripts/run_PGG_AngDistCalc_snull_CompVer_msc.sh
NullPlottinghttps://github.com/PennLINC/PWs/blob/main/scripts/NullPlotting.Rmd
https://patch-diff.githubusercontent.com/PennLINC/DevProps#91-alternative-hierarchy-dip-statistics-versus-null
BALSAhttps://balsa.wustl.edu/study/show/mDBP0
this paperhttps://www.sciencedirect.com/science/article/pii/S1053811922004797
downsample_gMM.shhttps://github.com/PennLINC/PWs/blob/main/scripts/downsample_gMM.sh
is converted to a .mat filehttps://github.com/PennLINC/PWs/blob/main/scripts/myGfuncgii_2_mat.m
MyG (Myelin gradient) AngDistCalc4_CompVer.mhttps://github.com/PennLINC/PWs/blob/main/scripts/MyG_AngDistCalc4_CompVer.m
this scripthttps://github.com/PennLINC/PWs/blob/main/scripts/MyG_AngDistCalc_snull_CompVer.m
this scripthttps://github.com/PennLINC/PWs/blob/main/scripts/run_MyG_AngDistCalc_snull_CompVer.sh
NullPlottinghttps://github.com/PennLINC/PWs/blob/main/scripts/NullPlotting.Rmd
NullPlottinghttps://github.com/PennLINC/PWs/blob/main/scripts/NullPlotting.Rmd
https://patch-diff.githubusercontent.com/PennLINC/DevProps#92-alternative-hierarchy-task-effects
the compiled version of this scripthttps://github.com/PennLINC/PWs/blob/main/scripts/MyG_AngDistCalc_c_CompVer.m
this scripthttps://github.com/PennLINC/PWs/blob/main/scripts/run_MyG_AngDistCalc_c_CompVer.sh
Extract_BUTD_ResultantVecs_My_c.mhttps://github.com/PennLINC/PWs/blob/main/scripts/Extract_BUTD_ResultantVecs_My_c.m
BUTD_to_Rformat_My_c.mhttps://github.com/PennLINC/PWs/blob/main/scripts/BUTD_to_Rformat_My_c.m
lefthttps://github.com/PennLINC/PWs/blob/main/scripts/facewise_ttest_L_My.R
righthttps://github.com/PennLINC/PWs/blob/main/scripts/facewise_ttest_R_My.R
FDR_facewise_t_My.Rhttps://github.com/PennLINC/PWs/blob/main/scripts/FDR_facewise_t_My.R
Vis_Facevec.m scripthttps://github.com/PennLINC/PWs/blob/main/scripts/Vis_FaceVec.m
Vis_Facevec.mhttps://github.com/PennLINC/PWs/blob/main/scripts/Vis_FaceVec.m
https://patch-diff.githubusercontent.com/PennLINC/DevProps#93-alternative-hierarchy-developmental-effects
Bin_And_Aggregate_BuProp_180_Myhttps://github.com/PennLINC/PWs/blob/3429aee13d6e467152bbee3eb40a1c8d8d6eed2b/scripts/Bin_And_Aggregate_BuProp_180_My.m
group_level_analysis.rmdhttps://github.com/PennLINC/PWs/blob/main/scripts/Group_level_analysis.rmd
Bin_And_Aggregate_MyGDistribution_180_permSubjs.mhttps://github.com/PennLINC/DevProps/blob/main/scripts/Bin_And_Aggregate_MyGDistribution_180_permSubjs.m
Readme https://patch-diff.githubusercontent.com/PennLINC/DevProps#readme-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/PennLINC/DevProps
Activityhttps://patch-diff.githubusercontent.com/PennLINC/DevProps/activity
Custom propertieshttps://patch-diff.githubusercontent.com/PennLINC/DevProps/custom-properties
10 starshttps://patch-diff.githubusercontent.com/PennLINC/DevProps/stargazers
5 watchinghttps://patch-diff.githubusercontent.com/PennLINC/DevProps/watchers
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Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FPennLINC%2FDevProps&report=PennLINC+%28user%29
Releases 1https://patch-diff.githubusercontent.com/PennLINC/DevProps/releases
v1 Release Latest Jan 16, 2023 https://patch-diff.githubusercontent.com/PennLINC/DevProps/releases/tag/v1.0
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