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Title: PacBio · GitHub

Open Graph Title: PacBio

X Title: PacBio

Description: PacBio has 106 repositories available. Follow their code on GitHub.

Open Graph Description: PacBio has 106 repositories available. Follow their code on GitHub.

X Description: PacBio has 106 repositories available. Follow their code on GitHub.

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github@pacb.com

Opengraph URL: https://github.com/PacificBiosciences

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aardvark - Small variant, structural variant, and tandem repeat benchmarking toolhttps://github.com/PacificBiosciences/aardvark
hificnv – Copy number variant caller and depth visualization utilityhttps://github.com/PacificBiosciences/HiFiCNV
hiphase – Small variant, structural variant, and short tandem repeat phasing toolhttps://github.com/PacificBiosciences/HiPhase
isoseq – Scalable De Novo Isoform Discoveryhttps://github.com/PacificBiosciences/IsoSeq
methbat – Battery of methylation toolshttps://github.com/PacificBiosciences/MethBat
mitorsaw - Mitochondrial variant calling and heteroplasmy detectionhttps://github.com/PacificBiosciences/mitorsaw
owl – Microsatellite instability measureshttps://github.com/PacificBiosciences/owl
pangu – Star-typer for long-read PGx applicationshttps://github.com/PacificBiosciences/pangu
paraphase – Caller for highly homologous geneshttps://github.com/PacificBiosciences/paraphase
pbaa – Amplicon Analysishttps://github.com/PacificBiosciences/pbAA
pbfusion – Fusion gene caller for Iso-Seq sequencing data.https://github.com/PacificBiosciences/pbfusion
pbmm2 – A minimap2 frontend for PacBio native data formatshttps://github.com/PacificBiosciences/pbmm2
pbsv – Structural variant calling and analysis toolshttps://github.com/PacificBiosciences/pbsv
pbtk – PacBio BAM toolkithttps://github.com/PacificBiosciences/pbtk
sawfish – Joint structural variant and copy number variant caller for HiFi sequencing datahttps://github.com/PacificBiosciences/sawfish
skera – Kinnex HiFi read splitterhttps://skera.how/
starphase – Phase-aware pharmacogenomic diplotyperhttps://github.com/PacificBiosciences/pb-StarPhase
svpack – Filtering, comparing, and annotating structural varianthttps://github.com/PacificBiosciences/svpack
trgt – Tandem repeat genotyping and visualizationhttps://github.com/PacificBiosciences/trgt
Amplicon Workflowhttps://github.com/PacificBiosciences/hifi-amplicon-workflow
Full-length 16S analysis - Full-length 16S sequences to reporthttps://github.com/PacificBiosciences/HiFi-16S-workflow
Metagenomic analyseshttps://github.com/PacificBiosciences/pb-metagenomics-tools
PacBio Pipelines – Common Tasks and Workflowshttps://github.com/PacificBiosciences/wdl-common
Target enrichment workflowhttps://github.com/PacificBiosciences/HiFiTargetEnrichment
HiFi somatic WDL - Call somatic variants on tumor/normal WGS datahttps://github.com/PacificBiosciences/HiFi-somatic-WDL
How we demultiplex barcodeshttps://lima.how/
How we generate 5mC annotationshttps://github.com/PacificBiosciences/jasmine
How we generate HiFi readshttps://ccs.how/
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