René's URL Explorer Experiment


Title: GitHub - PASSIONLab/ELBA: Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly

Open Graph Title: GitHub - PASSIONLab/ELBA: Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly

X Title: GitHub - PASSIONLab/ELBA: Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly

Description: Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly - PASSIONLab/ELBA

Open Graph Description: Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly - PASSIONLab/ELBA

X Description: Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly - PASSIONLab/ELBA

Mail addresses
IPO@lbl.gov

Opengraph URL: https://github.com/PASSIONLab/ELBA

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:2f52eaf0-ee10-7ab3-57ef-ad8d6f2fadc6
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id9100:1FA6C4:6ABB7:8F9D2:6978AC9D
html-safe-nonceebfe6e0eab48ac815e13a4be3ecc19f5e3da603504e63ee874b7fa5e17d68b6a
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5MTAwOjFGQTZDNDo2QUJCNzo4RjlEMjo2OTc4QUM5RCIsInZpc2l0b3JfaWQiOiI1NzI3NDUxMTQ0MjUwNzY0NDQ1IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmac0f08865f2fb75ca5f4f7c1b3587601d6b576fd1da776903ffdaf0db0ca75d624
hovercard-subject-tagrepository:269807480
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/PASSIONLab/ELBA
twitter:imagehttps://opengraph.githubassets.com/1560a52589d6f8b5d09ed1038c487d7033fa5e9af7c72bd968dd600da689289d/PASSIONLab/ELBA
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/1560a52589d6f8b5d09ed1038c487d7033fa5e9af7c72bd968dd600da689289d/PASSIONLab/ELBA
og:image:altParallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly - PASSIONLab/ELBA
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None2981c597c945c1d90ac6fa355ce7929b2f413dfe7872ca5c435ee53a24a1de50
turbo-cache-controlno-preview
go-importgithub.com/PASSIONLab/ELBA git https://github.com/PASSIONLab/ELBA.git
octolytics-dimension-user_id69412288
octolytics-dimension-user_loginPASSIONLab
octolytics-dimension-repository_id269807480
octolytics-dimension-repository_nwoPASSIONLab/ELBA
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id269807480
octolytics-dimension-repository_network_root_nwoPASSIONLab/ELBA
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releasef8aa86d87c47054170094daaf9699b27a28a8448
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FPASSIONLab%2FELBA
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FPASSIONLab%2FELBA
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=PASSIONLab%2FELBA
Reloadhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA
Reloadhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA
Reloadhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA
PASSIONLab https://patch-diff.githubusercontent.com/PASSIONLab
ELBAhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FPASSIONLab%2FELBA
Fork 10 https://patch-diff.githubusercontent.com/login?return_to=%2FPASSIONLab%2FELBA
Star 16 https://patch-diff.githubusercontent.com/login?return_to=%2FPASSIONLab%2FELBA
16 stars https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/stargazers
10 forks https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/forks
Branches https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/branches
Tags https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/tags
Activity https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FPASSIONLab%2FELBA
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FPASSIONLab%2FELBA
Code https://patch-diff.githubusercontent.com/PASSIONLab/ELBA
Issues 0 https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/issues
Pull requests 0 https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/pulls
Actions https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/actions
Projects 0 https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/projects
Security 0 https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/security
Insights https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/pulse
Code https://patch-diff.githubusercontent.com/PASSIONLab/ELBA
Issues https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/issues
Pull requests https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/pulls
Actions https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/actions
Projects https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/projects
Security https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/security
Insights https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/pulse
Brancheshttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/branches
Tagshttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/tags
https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/branches
https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/tags
1,113 Commitshttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/commits/master/
https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/commits/master/
asmtoolshttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/tree/master/asmtools
asmtoolshttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/tree/master/asmtools
example_mediumhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/tree/master/example_medium
example_mediumhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/tree/master/example_medium
includehttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/tree/master/include
includehttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/tree/master/include
licenseshttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/tree/master/licenses
licenseshttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/tree/master/licenses
runshttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/tree/master/runs
runshttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/tree/master/runs
scripthttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/tree/master/script
scripthttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/tree/master/script
srchttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/tree/master/src
srchttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/tree/master/src
.gitignorehttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/.gitignore
.gitmoduleshttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/.gitmodules
.gitmoduleshttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/.gitmodules
Makefilehttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/Makefile
Makefilehttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/Makefile
README.mdhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/README.md
assembly_graph.pyhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/assembly_graph.py
assembly_graph.pyhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/assembly_graph.py
install.shhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/install.sh
install.shhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/install.sh
paf2gml.pyhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/paf2gml.py
paf2gml.pyhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/paf2gml.py
reads.fahttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/reads.fa
reads.fahttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/reads.fa
reads.fa.faihttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/reads.fa.fai
reads.fa.faihttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/reads.fa.fai
ref.fahttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/ref.fa
ref.fahttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/ref.fa
runtests.shhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/runtests.sh
runtests.shhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/runtests.sh
test.pyhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/test.py
test.pyhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/test.py
usage.txthttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/usage.txt
usage.txthttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/blob/master/usage.txt
READMEhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA
https://patch-diff.githubusercontent.com/PASSIONLab/ELBA#elba
https://patch-diff.githubusercontent.com/PASSIONLab/ELBA#parallel-string-graph-construction-transitive-reduction-and-contig-generation-for-de-novo-genome-assembly
https://patch-diff.githubusercontent.com/PASSIONLab/ELBA#prerequisites
https://patch-diff.githubusercontent.com/PASSIONLab/ELBA#dependencies
https://patch-diff.githubusercontent.com/PASSIONLab/ELBA#build-elba
herehttps://portal.nersc.gov/project/m1982/dibella.2d/inputs/
https://patch-diff.githubusercontent.com/PASSIONLab/ELBA#run-elba
https://patch-diff.githubusercontent.com/PASSIONLab/ELBA#input-data-samples
herehttps://portal.nersc.gov/project/m1982/dibella.2d/inputs/
seqtkhttps://github.com/lh3/seqtk
https://patch-diff.githubusercontent.com/PASSIONLab/ELBA#ready-to-run
https://patch-diff.githubusercontent.com/PASSIONLab/ELBA#run-test-program
herehttps://portal.nersc.gov/project/m1982/dibella.2d/inputs/
https://patch-diff.githubusercontent.com/PASSIONLab/ELBA#citation
Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assemblyhttps://arxiv.org/pdf/2010.10055.pdf
Distributed-Memory Parallel Contig Generation for De Novo Long-Read Genome Assemblyhttps://arxiv.org/pdf/2207.04350.pdf
BELLA: Berkeley Efficient Long-Read to Long-Read Aligner and Overlapperhttps://drive.google.com/file/d/132i0RAKyIIWk_BEl1jpf9R_V5eVkKkxT/view
https://doi.org/10.1101/464420https://doi.org/10.1101/464420
https://patch-diff.githubusercontent.com/PASSIONLab/ELBA#copyright
genome https://patch-diff.githubusercontent.com/topics/genome
hpc https://patch-diff.githubusercontent.com/topics/hpc
overlapping https://patch-diff.githubusercontent.com/topics/overlapping
genome-assembly https://patch-diff.githubusercontent.com/topics/genome-assembly
hpc-applications https://patch-diff.githubusercontent.com/topics/hpc-applications
kmer-counting https://patch-diff.githubusercontent.com/topics/kmer-counting
longread https://patch-diff.githubusercontent.com/topics/longread
spgemm https://patch-diff.githubusercontent.com/topics/spgemm
longread-aligner https://patch-diff.githubusercontent.com/topics/longread-aligner
combblas https://patch-diff.githubusercontent.com/topics/combblas
Readme https://patch-diff.githubusercontent.com/PASSIONLab/ELBA#readme-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA
Activityhttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/activity
Custom propertieshttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/custom-properties
16 starshttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/stargazers
7 watchinghttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/watchers
10 forkshttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FPASSIONLab%2FELBA&report=PASSIONLab+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/PASSIONLab/packages?repo_name=ELBA
Please reload this pagehttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA
Contributors 6https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/PASSIONLab/ELBA
C++ 73.1% https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/search?l=c%2B%2B
Python 14.7% https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/search?l=python
C 5.7% https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/search?l=c
Shell 3.1% https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/search?l=shell
Makefile 2.8% https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/search?l=makefile
R 0.5% https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/search?l=r
CMake 0.1% https://patch-diff.githubusercontent.com/PASSIONLab/ELBA/search?l=cmake
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.