René's URL Explorer Experiment


Title: GitHub - PAMorin/SNPdiscovery: Scripts for Methods in Molecular Biology chapter on SNP discovery

Open Graph Title: GitHub - PAMorin/SNPdiscovery: Scripts for Methods in Molecular Biology chapter on SNP discovery

X Title: GitHub - PAMorin/SNPdiscovery: Scripts for Methods in Molecular Biology chapter on SNP discovery

Description: Scripts for Methods in Molecular Biology chapter on SNP discovery - PAMorin/SNPdiscovery

Open Graph Description: Scripts for Methods in Molecular Biology chapter on SNP discovery - PAMorin/SNPdiscovery

X Description: Scripts for Methods in Molecular Biology chapter on SNP discovery - PAMorin/SNPdiscovery

Mail addresses
phillip.morin@noaa.gov

Opengraph URL: https://github.com/PAMorin/SNPdiscovery

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:cb52cf06-784e-7e32-9dfd-d8779b0b7ddc
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id9CCA:563B0:16C7A2A:1EBBEEC:698C4B90
html-safe-nonce7e034886474475087de3013a8d116bf2a25136377b72ffbcc2b8e2f90b634371
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5Q0NBOjU2M0IwOjE2QzdBMkE6MUVCQkVFQzo2OThDNEI5MCIsInZpc2l0b3JfaWQiOiI1NTA2NzQ3NTgzOTU3ODQ2OTI4IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmacd2d958c3bb2025f6ae0fc7ccebfdce6db83616f272bc0c4c1ba63db94a741459
hovercard-subject-tagrepository:65475905
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/PAMorin/SNPdiscovery
twitter:imagehttps://opengraph.githubassets.com/8ab0afcd9e81552ffde83342c86c94ee59aead47c9b92f74f0e57be3ff20ee18/PAMorin/SNPdiscovery
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/8ab0afcd9e81552ffde83342c86c94ee59aead47c9b92f74f0e57be3ff20ee18/PAMorin/SNPdiscovery
og:image:altScripts for Methods in Molecular Biology chapter on SNP discovery - PAMorin/SNPdiscovery
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None640eeb7b6ff4d8d106235d228c0c286e82592d4d2403227b5b2b4fc5832297a4
turbo-cache-controlno-preview
go-importgithub.com/PAMorin/SNPdiscovery git https://github.com/PAMorin/SNPdiscovery.git
octolytics-dimension-user_id20972101
octolytics-dimension-user_loginPAMorin
octolytics-dimension-repository_id65475905
octolytics-dimension-repository_nwoPAMorin/SNPdiscovery
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id65475905
octolytics-dimension-repository_network_root_nwoPAMorin/SNPdiscovery
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release3d444f0a47beeeac94cddbb51c91ab408befe8d4
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FPAMorin%2FSNPdiscovery
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FPAMorin%2FSNPdiscovery
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=PAMorin%2FSNPdiscovery
Reloadhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery
Reloadhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery
Reloadhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery
PAMorin https://patch-diff.githubusercontent.com/PAMorin
SNPdiscoveryhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FPAMorin%2FSNPdiscovery
Fork 0 https://patch-diff.githubusercontent.com/login?return_to=%2FPAMorin%2FSNPdiscovery
Star 3 https://patch-diff.githubusercontent.com/login?return_to=%2FPAMorin%2FSNPdiscovery
3 stars https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/stargazers
0 forks https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/forks
Branches https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/branches
Tags https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/tags
Activity https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FPAMorin%2FSNPdiscovery
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FPAMorin%2FSNPdiscovery
Code https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery
Issues 0 https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/issues
Pull requests 0 https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/pulls
Actions https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/actions
Projects 0 https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/projects
Security 0 https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/security
Insights https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/pulse
Code https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery
Issues https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/issues
Pull requests https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/pulls
Actions https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/actions
Projects https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/projects
Security https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/security
Insights https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/pulse
Brancheshttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/branches
Tagshttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/tags
https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/branches
https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/tags
12 Commitshttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/commits/master/
https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/commits/master/
README.mdhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/README.md
Script10_plotQC.Rhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script10_plotQC.R
Script10_plotQC.Rhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script10_plotQC.R
Script11_Filter7_Remove_HWEexcessHet.Rhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script11_Filter7_Remove_HWEexcessHet.R
Script11_Filter7_Remove_HWEexcessHet.Rhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script11_Filter7_Remove_HWEexcessHet.R
Script1_SNP_call_filter.shhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script1_SNP_call_filter.sh
Script1_SNP_call_filter.shhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script1_SNP_call_filter.sh
Script2_generate_genotype_blocks.pyhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script2_generate_genotype_blocks.py
Script2_generate_genotype_blocks.pyhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script2_generate_genotype_blocks.py
Script3a_Filter1_mapping_quality.Rhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script3a_Filter1_mapping_quality.R
Script3a_Filter1_mapping_quality.Rhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script3a_Filter1_mapping_quality.R
Script3b_Filter2_excessive_coverage.Rhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script3b_Filter2_excessive_coverage.R
Script3b_Filter2_excessive_coverage.Rhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script3b_Filter2_excessive_coverage.R
Script4a_Filter1_Remove_poor_mapping_quality.Rhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script4a_Filter1_Remove_poor_mapping_quality.R
Script4a_Filter1_Remove_poor_mapping_quality.Rhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script4a_Filter1_Remove_poor_mapping_quality.R
Script4b_Filter2_Remove_excessive_coverage.Rhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script4b_Filter2_Remove_excessive_coverage.R
Script4b_Filter2_Remove_excessive_coverage.Rhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script4b_Filter2_Remove_excessive_coverage.R
Script5_Filter3_excessive_individuals.Rhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script5_Filter3_excessive_individuals.R
Script5_Filter3_excessive_individuals.Rhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script5_Filter3_excessive_individuals.R
Script6_Filter4_Remove_rare_SNPs.Rhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script6_Filter4_Remove_rare_SNPs.R
Script6_Filter4_Remove_rare_SNPs.Rhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script6_Filter4_Remove_rare_SNPs.R
Script7_SNP_call_filter_GATK.shhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script7_SNP_call_filter_GATK.sh
Script7_SNP_call_filter_GATK.shhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script7_SNP_call_filter_GATK.sh
Script8_generate_genotype_blocks_GATK.pyhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script8_generate_genotype_blocks_GATK.py
Script8_generate_genotype_blocks_GATK.pyhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script8_generate_genotype_blocks_GATK.py
Script9_Filter6_compare_SNP_datasets.Rhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script9_Filter6_compare_SNP_datasets.R
Script9_Filter6_compare_SNP_datasets.Rhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/blob/master/Script9_Filter6_compare_SNP_datasets.R
READMEhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery
https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery#snpdiscovery
https://github.com/PAMorin/SNPdiscovery/issueshttps://github.com/PAMorin/SNPdiscovery/issues
https://github.com/PAMorin/SNPdiscovery/https://github.com/PAMorin/SNPdiscovery/
Readme https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery#readme-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery
Activityhttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/activity
3 starshttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/stargazers
1 watchinghttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/watchers
0 forkshttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FPAMorin%2FSNPdiscovery&report=PAMorin+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/releases
Packages 0https://patch-diff.githubusercontent.com/users/PAMorin/packages?repo_name=SNPdiscovery
R 58.5% https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/search?l=r
Python 33.0% https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/search?l=python
Shell 8.5% https://patch-diff.githubusercontent.com/PAMorin/SNPdiscovery/search?l=shell
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.