René's URL Explorer Experiment


Title: GitHub - OmimiCode/alphafold: Open source code for AlphaFold.

Open Graph Title: GitHub - OmimiCode/alphafold: Open source code for AlphaFold.

X Title: GitHub - OmimiCode/alphafold: Open source code for AlphaFold.

Description: Open source code for AlphaFold. Contribute to OmimiCode/alphafold development by creating an account on GitHub.

Open Graph Description: Open source code for AlphaFold. Contribute to OmimiCode/alphafold development by creating an account on GitHub.

X Description: Open source code for AlphaFold. Contribute to OmimiCode/alphafold development by creating an account on GitHub.

Opengraph URL: https://github.com/OmimiCode/alphafold

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:cc815ea9-a457-f93d-57f7-f1ed2fd55782
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idEB68:D1C06:31375F:42AF00:698F6018
html-safe-nonced05a8f460d7c16c5518679c40c8ef4afcc40769ce17e1b574922eb16454d8ca7
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJFQjY4OkQxQzA2OjMxMzc1Rjo0MkFGMDA6Njk4RjYwMTgiLCJ2aXNpdG9yX2lkIjoiMzMyOTg5MDU2ODcyMTM1ODg3MiIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac6fff850c7c245820f13caf5424cc1f9142ac5b1265bc69155f5bcf6ab6aa82ca
hovercard-subject-tagrepository:388797634
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/OmimiCode/alphafold
twitter:imagehttps://opengraph.githubassets.com/89bf7cdcc932f94e422715425a623c2b88e12387b5a24166706b589885026031/OmimiCode/alphafold
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/89bf7cdcc932f94e422715425a623c2b88e12387b5a24166706b589885026031/OmimiCode/alphafold
og:image:altOpen source code for AlphaFold. Contribute to OmimiCode/alphafold development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None7ab1c9acb90dba91d5e994ebfb6bfb1130e0e0e6aca329cdbbd934d636e22ab6
turbo-cache-controlno-preview
go-importgithub.com/OmimiCode/alphafold git https://github.com/OmimiCode/alphafold.git
octolytics-dimension-user_id69190825
octolytics-dimension-user_loginOmimiCode
octolytics-dimension-repository_id388797634
octolytics-dimension-repository_nwoOmimiCode/alphafold
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forktrue
octolytics-dimension-repository_parent_id377851948
octolytics-dimension-repository_parent_nwogoogle-deepmind/alphafold
octolytics-dimension-repository_network_root_id377851948
octolytics-dimension-repository_network_root_nwogoogle-deepmind/alphafold
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release04a785903b8c8db66e4594aee5b2e56cf7232706
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/OmimiCode/alphafold#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FOmimiCode%2Falphafold
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FOmimiCode%2Falphafold
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=OmimiCode%2Falphafold
Reloadhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold
Reloadhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold
Reloadhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold
OmimiCode https://patch-diff.githubusercontent.com/OmimiCode
alphafoldhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold
google-deepmind/alphafoldhttps://patch-diff.githubusercontent.com/google-deepmind/alphafold
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FOmimiCode%2Falphafold
Fork 0 https://patch-diff.githubusercontent.com/login?return_to=%2FOmimiCode%2Falphafold
Star 0 https://patch-diff.githubusercontent.com/login?return_to=%2FOmimiCode%2Falphafold
Apache-2.0 license https://patch-diff.githubusercontent.com/OmimiCode/alphafold/blob/main/LICENSE
0 stars https://patch-diff.githubusercontent.com/OmimiCode/alphafold/stargazers
2.6k forks https://patch-diff.githubusercontent.com/OmimiCode/alphafold/forks
Branches https://patch-diff.githubusercontent.com/OmimiCode/alphafold/branches
Tags https://patch-diff.githubusercontent.com/OmimiCode/alphafold/tags
Activity https://patch-diff.githubusercontent.com/OmimiCode/alphafold/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FOmimiCode%2Falphafold
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FOmimiCode%2Falphafold
Code https://patch-diff.githubusercontent.com/OmimiCode/alphafold
Pull requests 0 https://patch-diff.githubusercontent.com/OmimiCode/alphafold/pulls
Actions https://patch-diff.githubusercontent.com/OmimiCode/alphafold/actions
Projects 0 https://patch-diff.githubusercontent.com/OmimiCode/alphafold/projects
Security 0 https://patch-diff.githubusercontent.com/OmimiCode/alphafold/security
Insights https://patch-diff.githubusercontent.com/OmimiCode/alphafold/pulse
Code https://patch-diff.githubusercontent.com/OmimiCode/alphafold
Pull requests https://patch-diff.githubusercontent.com/OmimiCode/alphafold/pulls
Actions https://patch-diff.githubusercontent.com/OmimiCode/alphafold/actions
Projects https://patch-diff.githubusercontent.com/OmimiCode/alphafold/projects
Security https://patch-diff.githubusercontent.com/OmimiCode/alphafold/security
Insights https://patch-diff.githubusercontent.com/OmimiCode/alphafold/pulse
Brancheshttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/branches
Tagshttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/tags
https://patch-diff.githubusercontent.com/OmimiCode/alphafold/branches
https://patch-diff.githubusercontent.com/OmimiCode/alphafold/tags
3 Commitshttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/commits/main/
https://patch-diff.githubusercontent.com/OmimiCode/alphafold/commits/main/
alphafoldhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/tree/main/alphafold
alphafoldhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/tree/main/alphafold
dockerhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/tree/main/docker
dockerhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/tree/main/docker
imgshttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/tree/main/imgs
imgshttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/tree/main/imgs
notebookshttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/tree/main/notebooks
notebookshttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/tree/main/notebooks
scriptshttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/tree/main/scripts
scriptshttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/tree/main/scripts
CONTRIBUTING.mdhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/blob/main/CONTRIBUTING.md
CONTRIBUTING.mdhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/blob/main/CONTRIBUTING.md
LICENSEhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/blob/main/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/blob/main/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/blob/main/README.md
requirements.txthttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/blob/main/requirements.txt
requirements.txthttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/blob/main/requirements.txt
run_alphafold.pyhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/blob/main/run_alphafold.py
run_alphafold.pyhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/blob/main/run_alphafold.py
run_alphafold_test.pyhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/blob/main/run_alphafold_test.py
run_alphafold_test.pyhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/blob/main/run_alphafold_test.py
setup.pyhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/blob/main/setup.py
setup.pyhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/blob/main/setup.py
READMEhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold
Contributinghttps://patch-diff.githubusercontent.com/OmimiCode/alphafold
Apache-2.0 licensehttps://patch-diff.githubusercontent.com/OmimiCode/alphafold
https://patch-diff.githubusercontent.com/OmimiCode/alphafold/blob/main/imgs/header.jpg
https://patch-diff.githubusercontent.com/OmimiCode/alphafold#alphafold
citehttps://patch-diff.githubusercontent.com/OmimiCode/alphafold#citing-this-work
AlphaFold paperhttps://doi.org/10.1038/s41586-021-03819-2
Supplementary Informationhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41586-021-03819-2/MediaObjects/41586_2021_3819_MOESM1_ESM.pdf
this Colab notebookhttps://colab.research.google.com/github/deepmind/alphafold/blob/main/notebooks/AlphaFold.ipynb
https://patch-diff.githubusercontent.com/OmimiCode/alphafold/blob/main/imgs/casp14_predictions.gif
https://patch-diff.githubusercontent.com/OmimiCode/alphafold#first-time-setup
Dockerhttps://www.docker.com/
NVIDIA Container Toolkithttps://docs.nvidia.com/datacenter/cloud-native/container-toolkit/install-guide.html
Docker as a non-root userhttps://docs.docker.com/engine/install/linux-postinstall/#manage-docker-as-a-non-root-user
NVIDIA Container Toolkithttps://docs.nvidia.com/datacenter/cloud-native/container-toolkit/install-guide.html
NVIDIA Docker issuehttps://github.com/NVIDIA/nvidia-docker/issues/1447#issuecomment-801479573
https://patch-diff.githubusercontent.com/OmimiCode/alphafold#genetic-databases
UniRef90https://www.uniprot.org/help/uniref
MGnifyhttps://www.ebi.ac.uk/metagenomics/
BFDhttps://bfd.mmseqs.com/
Uniclust30https://uniclust.mmseqs.com/
PDB70http://wwwuser.gwdg.de/~compbiol/data/hhsuite/databases/hhsuite_dbs/
PDBhttps://www.rcsb.org/
note on reproducibilityhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold#note-on-reproducibility
mirrored databaseshttps://patch-diff.githubusercontent.com/OmimiCode/alphafold#mirrored-databases
https://patch-diff.githubusercontent.com/OmimiCode/alphafold#model-parameters
Disclaimerhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold#license-and-disclaimer
https://storage.googleapis.com/alphafold/alphafold_params_2021-07-14.tarhttps://storage.googleapis.com/alphafold/alphafold_params_2021-07-14.tar
https://patch-diff.githubusercontent.com/OmimiCode/alphafold#running-alphafold
Python Virtual Environmenthttps://docs.python.org/3/tutorial/venv.html
GPU enumerationhttps://docs.nvidia.com/datacenter/cloud-native/container-toolkit/user-guide.html#gpu-enumeration
https://patch-diff.githubusercontent.com/OmimiCode/alphafold#alphafold-output
https://patch-diff.githubusercontent.com/OmimiCode/alphafold#inferencing-many-proteins
https://patch-diff.githubusercontent.com/OmimiCode/alphafold#note-on-reproducibility
v2020_01https://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2020_01/uniref/
v2018_12http://ftp.ebi.ac.uk/pub/databases/metagenomics/peptide_database/2018_12/
v2018_08http://wwwuser.gwdg.de/~compbiol/uniclust/2018_08/
only version availablehttps://bfd.mmseqs.com/
https://patch-diff.githubusercontent.com/OmimiCode/alphafold#citing-this-work
https://patch-diff.githubusercontent.com/OmimiCode/alphafold#community-contributions
ColabFold AlphaFold2 notebookhttps://colab.research.google.com/github/sokrypton/ColabFold/blob/main/AlphaFold2.ipynb
(Mirdita et al. 2019, Bioinformatics)https://academic.oup.com/bioinformatics/article/35/16/2856/5280135
https://patch-diff.githubusercontent.com/OmimiCode/alphafold#acknowledgements
Abseilhttps://github.com/abseil/abseil-py
Biopythonhttps://biopython.org
Chexhttps://github.com/deepmind/chex
Colabhttps://research.google.com/colaboratory/
Dockerhttps://www.docker.com
HH Suitehttps://github.com/soedinglab/hh-suite
HMMER Suitehttp://eddylab.org/software/hmmer
Haikuhttps://github.com/deepmind/dm-haiku
Immutabledicthttps://github.com/corenting/immutabledict
JAXhttps://github.com/google/jax/
Kalignhttps://msa.sbc.su.se/cgi-bin/msa.cgi
matplotlibhttps://matplotlib.org/
ML Collectionshttps://github.com/google/ml_collections
NumPyhttps://numpy.org
OpenMMhttps://github.com/openmm/openmm
OpenStructurehttps://openstructure.org
pymol3dhttps://github.com/avirshup/py3dmol
SciPyhttps://scipy.org
Sonnethttps://github.com/deepmind/sonnet
TensorFlowhttps://github.com/tensorflow/tensorflow
Treehttps://github.com/deepmind/tree
tqdmhttps://github.com/tqdm/tqdm
https://patch-diff.githubusercontent.com/OmimiCode/alphafold#license-and-disclaimer
https://patch-diff.githubusercontent.com/OmimiCode/alphafold#alphafold-code-license
https://www.apache.org/licenses/LICENSE-2.0https://www.apache.org/licenses/LICENSE-2.0
https://patch-diff.githubusercontent.com/OmimiCode/alphafold#model-parameters-license
https://creativecommons.org/licenses/by-nc/4.0/legalcodehttps://creativecommons.org/licenses/by-nc/4.0/legalcode
https://patch-diff.githubusercontent.com/OmimiCode/alphafold#third-party-software
Acknowledgementshttps://patch-diff.githubusercontent.com/OmimiCode/alphafold#acknowledgements
https://patch-diff.githubusercontent.com/OmimiCode/alphafold#mirrored-databases
BFDhttps://bfd.mmseqs.com/
Creative Commons Attribution-ShareAlike 4.0 International Licensehttp://creativecommons.org/licenses/by-sa/4.0/
BFDhttps://bfd.mmseqs.com/
Creative Commons Attribution-ShareAlike 4.0 International Licensehttp://creativecommons.org/licenses/by-sa/4.0/
https://www.nature.com/articles/s41586-021-03828-1https://www.nature.com/articles/s41586-021-03828-1
Uniclust30: v2018_08http://wwwuser.gwdg.de/~compbiol/uniclust/2018_08/
Creative Commons Attribution-ShareAlike 4.0 International Licensehttp://creativecommons.org/licenses/by-sa/4.0/
MGnify: v2018_12http://ftp.ebi.ac.uk/pub/databases/metagenomics/peptide_database/current_release/README.txt
CC0 1.0 Universal (CC0 1.0) Public Domain Dedicationhttps://creativecommons.org/publicdomain/zero/1.0/
Readme https://patch-diff.githubusercontent.com/OmimiCode/alphafold#readme-ov-file
Apache-2.0 license https://patch-diff.githubusercontent.com/OmimiCode/alphafold#Apache-2.0-1-ov-file
Contributing https://patch-diff.githubusercontent.com/OmimiCode/alphafold#contributing-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/OmimiCode/alphafold
Activityhttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/activity
0 starshttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/stargazers
0 watchinghttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/watchers
0 forkshttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FOmimiCode%2Falphafold&report=OmimiCode+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/OmimiCode/alphafold/releases
1 tags https://patch-diff.githubusercontent.com/OmimiCode/alphafold/tags
Packages 0https://patch-diff.githubusercontent.com/users/OmimiCode/packages?repo_name=alphafold
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.