René's URL Explorer Experiment


Title: GitHub - Noble-Lab/FDRBench: Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment

Open Graph Title: GitHub - Noble-Lab/FDRBench: Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment

X Title: GitHub - Noble-Lab/FDRBench: Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment

Description: Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment - Noble-Lab/FDRBench

Open Graph Description: Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment - Noble-Lab/FDRBench

X Description: Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment - Noble-Lab/FDRBench

Opengraph URL: https://github.com/Noble-Lab/FDRBench

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:e4543e5b-7e0c-d891-286e-affb9407aedf
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idC728:19BDB6:11F56A2:179274B:698ED08C
html-safe-noncef528c5ddf97fb399a421e64eeb66513ff1645d8f2c33ad855d3d461c4b4b1b6b
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJDNzI4OjE5QkRCNjoxMUY1NkEyOjE3OTI3NEI6Njk4RUQwOEMiLCJ2aXNpdG9yX2lkIjoiMzU0MTc2Mjg2ODgwMTA5Nzg2OCIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmacb2c2d4b1f4f613665676e1a1ecdd5f536a9ea4dbf9421f75213e37d5706662d5
hovercard-subject-tagrepository:809118818
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/Noble-Lab/FDRBench
twitter:imagehttps://opengraph.githubassets.com/e8a5452d577f8acb8031d0f45008838ceb616f9228484215fb1400248bf2c313/Noble-Lab/FDRBench
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/e8a5452d577f8acb8031d0f45008838ceb616f9228484215fb1400248bf2c313/Noble-Lab/FDRBench
og:image:altEstimation of false discovery proportion for mass spectrometry proteomics data using entrapment - Noble-Lab/FDRBench
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Nonecb2828a801ee6b7be618f3ac76fbf55def35bbc30f053a9c41bf90210b8b72ba
turbo-cache-controlno-preview
go-importgithub.com/Noble-Lab/FDRBench git https://github.com/Noble-Lab/FDRBench.git
octolytics-dimension-user_id70497331
octolytics-dimension-user_loginNoble-Lab
octolytics-dimension-repository_id809118818
octolytics-dimension-repository_nwoNoble-Lab/FDRBench
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id809118818
octolytics-dimension-repository_network_root_nwoNoble-Lab/FDRBench
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releasee6b91a7e6e46287d26887e3fb7a4161657bab8f7
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FNoble-Lab%2FFDRBench
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FNoble-Lab%2FFDRBench
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=Noble-Lab%2FFDRBench
Reloadhttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench
Reloadhttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench
Reloadhttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench
Noble-Lab https://patch-diff.githubusercontent.com/Noble-Lab
FDRBenchhttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FNoble-Lab%2FFDRBench
Fork 3 https://patch-diff.githubusercontent.com/login?return_to=%2FNoble-Lab%2FFDRBench
Star 24 https://patch-diff.githubusercontent.com/login?return_to=%2FNoble-Lab%2FFDRBench
Apache-2.0 license https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/blob/main/LICENSE
24 stars https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/stargazers
3 forks https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/forks
Branches https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/branches
Tags https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/tags
Activity https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FNoble-Lab%2FFDRBench
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FNoble-Lab%2FFDRBench
Code https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench
Issues 0 https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/issues
Pull requests 0 https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/pulls
Actions https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/actions
Projects 0 https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/projects
Security 0 https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/security
Insights https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/pulse
Code https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench
Issues https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/issues
Pull requests https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/pulls
Actions https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/actions
Projects https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/projects
Security https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/security
Insights https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/pulse
Brancheshttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/branches
Tagshttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/tags
https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/branches
https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/tags
30 Commitshttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/commits/main/
https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/commits/main/
examplehttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/tree/main/example
examplehttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/tree/main/example
src/mainhttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/tree/main/src/main
src/mainhttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/tree/main/src/main
LICENSEhttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/blob/main/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/blob/main/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/blob/main/README.md
pom.xmlhttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/blob/main/pom.xml
pom.xmlhttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/blob/main/pom.xml
READMEhttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench
Apache-2.0 licensehttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench
FDRBenchhttps://www.nature.com/articles/s41592-025-02719-x
https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench#fdrbench
https://camo.githubusercontent.com/d9b1e3cb0d751bdf5e68cb5bf982282df336b0cb56ce21df564d11a96131a16e/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f646f776e6c6f6164732f4e6f626c652d4c61622f46445242656e63682f746f74616c2e737667
https://camo.githubusercontent.com/c7740f426cbb473ccbca4bc933cf21df3c9d32ea9e296f4c8d920aeee95381eb/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f72656c656173652f4e6f626c652d4c61622f46445242656e63682e737667
https://camo.githubusercontent.com/878874c0a4ab3f655c9d6aaeb59bfdc04b88a4108be79850592c3c6ae17cc7fa/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f646f776e6c6f6164732f4e6f626c652d4c61622f46445242656e63682f6c61746573742f746f74616c
https://www.nature.com/articles/s41592-025-02719-x/figures/1
https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench#installation
https://openjdk.org/install/https://openjdk.org/install/
https://www.oracle.com/java/technologies/downloads/https://www.oracle.com/java/technologies/downloads/
https://github.com/Noble-Lab/FDRBench/releaseshttps://github.com/Noble-Lab/FDRBench/releases
https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench#usage
https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench#build-entrapment-databases
https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench#build-entrapment-databases-using-randomly-shuffled-target-sequences---peptide-level
UniProthttps://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/reference_proteomes/Eukaryota/UP000005640/UP000005640_9606.fasta.gz
https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench#build-entrapment-databases-using-randomly-shuffled-target-sequences---protein-level
UniProthttps://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/reference_proteomes/Eukaryota/UP000005640/UP000005640_9606.fasta.gz
DIA-NNhttps://github.com/vdemichev/DiaNN
https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench#build-entrapment-databases-using-foreign-species---peptide-level
UniProthttps://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/reference_proteomes/Eukaryota/UP000005640/UP000005640_9606.fasta.gz
https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench#build-entrapment-databases-using-foreign-species---protein-level
UniProthttps://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/reference_proteomes/Eukaryota/UP000005640/UP000005640_9606.fasta.gz
https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench#fdp-calculation
https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench#peptide-or-precursor-level-fdr-control-evaluation
https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench#protein-level-fdr-control-evaluation
examplehttps://github.com/Noble-Lab/FDRBench/tree/master/example
https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench#visualation-fdr-control-evaluation-result
https://private-user-images.githubusercontent.com/5302110/465665595-38ad772b-ba62-4225-aac1-96c73f7b4f9c.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.MsqC2qPQfr2alBUW7rOlW7rvqn_PI2iTwfxIjMsXNrM
https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench#how-to-cite
Assessment of false discovery rate control in tandem mass spectrometry analysis using entrapmenthttps://doi.org/10.1038/s41592-025-02719-x
Readme https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench#readme-ov-file
Apache-2.0 license https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench#Apache-2.0-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench
Activityhttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/activity
Custom propertieshttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/custom-properties
24 starshttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/stargazers
5 watchinghttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/watchers
3 forkshttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FNoble-Lab%2FFDRBench&report=Noble-Lab+%28user%29
Releases 2https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/releases
v0.0.4 Latest Jul 16, 2025 https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/releases/tag/v0.0.4
+ 1 releasehttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/Noble-Lab/packages?repo_name=FDRBench
Please reload this pagehttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench
Contributors 3https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/Noble-Lab/FDRBench
Java 100.0% https://patch-diff.githubusercontent.com/Noble-Lab/FDRBench/search?l=java
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.