René's URL Explorer Experiment


Title: GitHub - NickJD/ORForise: Comparison pipeline for Prokaryote Protein Coding Gene Predictors

Open Graph Title: GitHub - NickJD/ORForise: Comparison pipeline for Prokaryote Protein Coding Gene Predictors

X Title: GitHub - NickJD/ORForise: Comparison pipeline for Prokaryote Protein Coding Gene Predictors

Description: Comparison pipeline for Prokaryote Protein Coding Gene Predictors - GitHub - NickJD/ORForise: Comparison pipeline for Prokaryote Protein Coding Gene Predictors

Open Graph Description: Comparison pipeline for Prokaryote Protein Coding Gene Predictors - GitHub - NickJD/ORForise: Comparison pipeline for Prokaryote Protein Coding Gene Predictors

X Description: Comparison pipeline for Prokaryote Protein Coding Gene Predictors - GitHub - NickJD/ORForise: Comparison pipeline for Prokaryote Protein Coding Gene Predictors

Opengraph URL: https://github.com/NickJD/ORForise

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:0a73e2a9-3303-2b78-52c6-8c37012431c9
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id905A:16C4B5:16EDC5:1FCB77:698DD7A8
html-safe-noncebdc24a2e79fc446299edaed6f58efc965f48ccac2ed45e62f49f865a47597a5e
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5MDVBOjE2QzRCNToxNkVEQzU6MUZDQjc3OjY5OEREN0E4IiwidmlzaXRvcl9pZCI6IjM2ODIyMzEzNDYxNzQ3NDQ0ODgiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmac5d437bd7ec75ac16ddffd4782c7df8e02e130a77c75b06b366190cc101a2ee69
hovercard-subject-tagrepository:265833273
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/NickJD/ORForise
twitter:imagehttps://opengraph.githubassets.com/f3fbcf2ecea0465183834b84d8f0bd5dee5b6555070e9e02b739ff8e1b913a47/NickJD/ORForise
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/f3fbcf2ecea0465183834b84d8f0bd5dee5b6555070e9e02b739ff8e1b913a47/NickJD/ORForise
og:image:altComparison pipeline for Prokaryote Protein Coding Gene Predictors - GitHub - NickJD/ORForise: Comparison pipeline for Prokaryote Protein Coding Gene Predictors
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Noned9c5a945db9d79f5476dbe75d3700f24739ef28ab02037163bdeac4050cd4ded
turbo-cache-controlno-preview
go-importgithub.com/NickJD/ORForise git https://github.com/NickJD/ORForise.git
octolytics-dimension-user_id5814452
octolytics-dimension-user_loginNickJD
octolytics-dimension-repository_id265833273
octolytics-dimension-repository_nwoNickJD/ORForise
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id265833273
octolytics-dimension-repository_network_root_nwoNickJD/ORForise
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release1e3d09effb9f6299d5990409f03a0dfa8eca8595
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/NickJD/ORForise#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FNickJD%2FORForise
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FNickJD%2FORForise
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=NickJD%2FORForise
Reloadhttps://patch-diff.githubusercontent.com/NickJD/ORForise
Reloadhttps://patch-diff.githubusercontent.com/NickJD/ORForise
Reloadhttps://patch-diff.githubusercontent.com/NickJD/ORForise
NickJD https://patch-diff.githubusercontent.com/NickJD
ORForisehttps://patch-diff.githubusercontent.com/NickJD/ORForise
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FNickJD%2FORForise
Fork 5 https://patch-diff.githubusercontent.com/login?return_to=%2FNickJD%2FORForise
Star 28 https://patch-diff.githubusercontent.com/login?return_to=%2FNickJD%2FORForise
GPL-3.0 license https://patch-diff.githubusercontent.com/NickJD/ORForise/blob/master/LICENSE
28 stars https://patch-diff.githubusercontent.com/NickJD/ORForise/stargazers
5 forks https://patch-diff.githubusercontent.com/NickJD/ORForise/forks
Branches https://patch-diff.githubusercontent.com/NickJD/ORForise/branches
Tags https://patch-diff.githubusercontent.com/NickJD/ORForise/tags
Activity https://patch-diff.githubusercontent.com/NickJD/ORForise/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FNickJD%2FORForise
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FNickJD%2FORForise
Code https://patch-diff.githubusercontent.com/NickJD/ORForise
Issues 1 https://patch-diff.githubusercontent.com/NickJD/ORForise/issues
Pull requests 0 https://patch-diff.githubusercontent.com/NickJD/ORForise/pulls
Actions https://patch-diff.githubusercontent.com/NickJD/ORForise/actions
Projects 0 https://patch-diff.githubusercontent.com/NickJD/ORForise/projects
Security 0 https://patch-diff.githubusercontent.com/NickJD/ORForise/security
Insights https://patch-diff.githubusercontent.com/NickJD/ORForise/pulse
Code https://patch-diff.githubusercontent.com/NickJD/ORForise
Issues https://patch-diff.githubusercontent.com/NickJD/ORForise/issues
Pull requests https://patch-diff.githubusercontent.com/NickJD/ORForise/pulls
Actions https://patch-diff.githubusercontent.com/NickJD/ORForise/actions
Projects https://patch-diff.githubusercontent.com/NickJD/ORForise/projects
Security https://patch-diff.githubusercontent.com/NickJD/ORForise/security
Insights https://patch-diff.githubusercontent.com/NickJD/ORForise/pulse
Brancheshttps://patch-diff.githubusercontent.com/NickJD/ORForise/branches
Tagshttps://patch-diff.githubusercontent.com/NickJD/ORForise/tags
https://patch-diff.githubusercontent.com/NickJD/ORForise/branches
https://patch-diff.githubusercontent.com/NickJD/ORForise/tags
91 Commitshttps://patch-diff.githubusercontent.com/NickJD/ORForise/commits/master/
https://patch-diff.githubusercontent.com/NickJD/ORForise/commits/master/
Genomeshttps://patch-diff.githubusercontent.com/NickJD/ORForise/tree/master/Genomes
Genomeshttps://patch-diff.githubusercontent.com/NickJD/ORForise/tree/master/Genomes
Supplementary_Datahttps://patch-diff.githubusercontent.com/NickJD/ORForise/tree/master/Supplementary_Data
Supplementary_Datahttps://patch-diff.githubusercontent.com/NickJD/ORForise/tree/master/Supplementary_Data
Test_Datahttps://patch-diff.githubusercontent.com/NickJD/ORForise/tree/master/Test_Data
Test_Datahttps://patch-diff.githubusercontent.com/NickJD/ORForise/tree/master/Test_Data
scriptshttps://patch-diff.githubusercontent.com/NickJD/ORForise/tree/master/scripts
scriptshttps://patch-diff.githubusercontent.com/NickJD/ORForise/tree/master/scripts
srchttps://patch-diff.githubusercontent.com/NickJD/ORForise/tree/master/src
srchttps://patch-diff.githubusercontent.com/NickJD/ORForise/tree/master/src
.gitignorehttps://patch-diff.githubusercontent.com/NickJD/ORForise/blob/master/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/NickJD/ORForise/blob/master/.gitignore
LICENSEhttps://patch-diff.githubusercontent.com/NickJD/ORForise/blob/master/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/NickJD/ORForise/blob/master/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/NickJD/ORForise/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/NickJD/ORForise/blob/master/README.md
__init__.pyhttps://patch-diff.githubusercontent.com/NickJD/ORForise/blob/master/__init__.py
__init__.pyhttps://patch-diff.githubusercontent.com/NickJD/ORForise/blob/master/__init__.py
pyproject.tomlhttps://patch-diff.githubusercontent.com/NickJD/ORForise/blob/master/pyproject.toml
pyproject.tomlhttps://patch-diff.githubusercontent.com/NickJD/ORForise/blob/master/pyproject.toml
requirements.txthttps://patch-diff.githubusercontent.com/NickJD/ORForise/blob/master/requirements.txt
requirements.txthttps://patch-diff.githubusercontent.com/NickJD/ORForise/blob/master/requirements.txt
READMEhttps://patch-diff.githubusercontent.com/NickJD/ORForise
GPL-3.0 licensehttps://patch-diff.githubusercontent.com/NickJD/ORForise
https://patch-diff.githubusercontent.com/NickJD/ORForise#orforise---genome-annotation-analysis-and-comparison-platform
https://academic.oup.com/bioinformatics/article/38/5/1198/6454948https://academic.oup.com/bioinformatics/article/38/5/1198/6454948
https://patch-diff.githubusercontent.com/NickJD/ORForise#published-in-bioinformatics----httpsacademicoupcombioinformaticsarticle38511986454948
https://patch-diff.githubusercontent.com/NickJD/ORForise#requirements-and-installation
https://patch-diff.githubusercontent.com/NickJD/ORForise#the-orforise-platform-is-written-in-python-36-3-and-only-requires-the-numpy-library-should-be-installed-automatically-by-pip-when-installing-orforise-which-is-standard-in-most-base-installations-of-python3
https://patch-diff.githubusercontent.com/NickJD/ORForise#intallation
https://patch-diff.githubusercontent.com/NickJD/ORForise#orforise-is-available-via-the-pip-python-package-manager-pip3-install-orforise-and-bioconda-conda-install--c-bioconda-orforise
https://patch-diff.githubusercontent.com/NickJD/ORForise#testing
https://patch-diff.githubusercontent.com/NickJD/ORForise#genome-annotation-analysis
https://patch-diff.githubusercontent.com/NickJD/ORForise#use-cases-running-if-via-pip
https://patch-diff.githubusercontent.com/NickJD/ORForise#compare-a-de-novo-genome-annotation-to-an-ensembl-annotation
https://patch-diff.githubusercontent.com/NickJD/ORForise#example-installation-through-pip-will-allow-user-to-call-the-programs-directly-from-the-orforise-package-prodigal-and-pyrodigal-provide-annotations-in-the-same-format
https://patch-diff.githubusercontent.com/NickJD/ORForise#example-output---see-test_datagenomese-coliannotation_compare
https://patch-diff.githubusercontent.com/NickJD/ORForise#compare-different-novel-annotations-with-each-other-on-a-single-genome
https://patch-diff.githubusercontent.com/NickJD/ORForise#aggregate-cds-prediction-analysis
https://patch-diff.githubusercontent.com/NickJD/ORForise#use-cases-running-if-via-pip-1
https://patch-diff.githubusercontent.com/NickJD/ORForise#example
https://patch-diff.githubusercontent.com/NickJD/ORForise#annotation-comparison-output---the-output-format-is-the-same-for-annotation_compare-and-aggregate_compare--see-test_datagenomese-coliaggregate_compare
https://patch-diff.githubusercontent.com/NickJD/ORForise#gffannotation-manipulation-tools-orforise-also-provides-tools-to-manipulate-and-combine-existing-annotations-in-gff-format-or-other-tool-specific-formats
https://patch-diff.githubusercontent.com/NickJD/ORForise#gff-adder
https://patch-diff.githubusercontent.com/NickJD/ORForise#example-running-gff-adder-to-combine-the-additional-cds-predictions-made-by-prodial-to-the-canonical-annotations-from-ensembl
https://patch-diff.githubusercontent.com/NickJD/ORForise#example-output-orforisetestingmyco_ensembl_gff_adder_prodigalgff
https://patch-diff.githubusercontent.com/NickJD/ORForise#annotation-intersector
https://patch-diff.githubusercontent.com/NickJD/ORForise#example-running-annotation-intersector-to-combine-and-contract-annotations-from-multiple-tools-or-reference-files
https://patch-diff.githubusercontent.com/NickJD/ORForise#example-output
https://patch-diff.githubusercontent.com/NickJD/ORForise#test_dataannotation-intersectorannotation-intersectgff
https://patch-diff.githubusercontent.com/NickJD/ORForise#test_dataannotation-intersectorannotation-intersectonly_in_referencegff
https://patch-diff.githubusercontent.com/NickJD/ORForise#test_dataannotation-intersectorannotation-intersectmismatchesgff
https://patch-diff.githubusercontent.com/NickJD/ORForise#convert-to-gff-converts-tool-specific-output-files-to-standard-gff3-format-for-use-in-orforise-analyses-beta
https://patch-diff.githubusercontent.com/NickJD/ORForise#genomes-available
https://patch-diff.githubusercontent.com/NickJD/ORForise#prediction-tool-formats-currently-available
https://patch-diff.githubusercontent.com/NickJD/ORForise#tool-specific-formats
https://patch-diff.githubusercontent.com/NickJD/ORForise#model-based-tools
http://bioinf.uni-greifswald.de/augustus/http://bioinf.uni-greifswald.de/augustus/
http://www.cbs.dtu.dk/services/EasyGene/http://www.cbs.dtu.dk/services/EasyGene/
http://www.softberry.com/berry.phtml?topic=fgenesb&group=programs&subgroup=gfindbhttp://www.softberry.com/berry.phtml?topic=fgenesb&group=programs&subgroup=gfindb
http://exon.gatech.edu/GeneMark/gm.cgihttp://exon.gatech.edu/GeneMark/gm.cgi
http://exon.gatech.edu/GeneMark/gmhmmp.cgihttp://exon.gatech.edu/GeneMark/gmhmmp.cgi
https://patch-diff.githubusercontent.com/NickJD/ORForise#self-trainingnon-model-based-tools
https://omics.informatics.indiana.edu/FragGeneScan/https://omics.informatics.indiana.edu/FragGeneScan/
http://exon.gatech.edu/GeneMark/heuristic_gmhmmp.cgihttp://exon.gatech.edu/GeneMark/heuristic_gmhmmp.cgi
http://exon.gatech.edu/GeneMark/genemarks.cgihttp://exon.gatech.edu/GeneMark/genemarks.cgi
http://exon.gatech.edu/GeneMark/genemarks2.cgihttp://exon.gatech.edu/GeneMark/genemarks2.cgi
http://ccb.jhu.edu/software/glimmer/index.shtmlhttp://ccb.jhu.edu/software/glimmer/index.shtml
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1636498/https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1636498/
http://metagene.nig.ac.jp/http://metagene.nig.ac.jp/
http://exon.gatech.edu/meta_gmhmmp.cgihttp://exon.gatech.edu/meta_gmhmmp.cgi
https://github.com/hyattpd/Prodigalhttps://github.com/hyattpd/Prodigal
https://github.com/TransDecoder/TransDecoder/wikihttps://github.com/TransDecoder/TransDecoder/wiki
https://github.com/salzberg-lab/Balroghttps://github.com/salzberg-lab/Balrog
Readme https://patch-diff.githubusercontent.com/NickJD/ORForise#readme-ov-file
GPL-3.0 license https://patch-diff.githubusercontent.com/NickJD/ORForise#GPL-3.0-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/NickJD/ORForise
Activityhttps://patch-diff.githubusercontent.com/NickJD/ORForise/activity
28 starshttps://patch-diff.githubusercontent.com/NickJD/ORForise/stargazers
4 watchinghttps://patch-diff.githubusercontent.com/NickJD/ORForise/watchers
5 forkshttps://patch-diff.githubusercontent.com/NickJD/ORForise/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FNickJD%2FORForise&report=NickJD+%28user%29
Releases 12https://patch-diff.githubusercontent.com/NickJD/ORForise/releases
v1.6.5: This release encompasses multiple subreleases. Latest Feb 5, 2026 https://patch-diff.githubusercontent.com/NickJD/ORForise/releases/tag/v1.6.5
+ 11 releaseshttps://patch-diff.githubusercontent.com/NickJD/ORForise/releases
Packages 0https://patch-diff.githubusercontent.com/users/NickJD/packages?repo_name=ORForise
Please reload this pagehttps://patch-diff.githubusercontent.com/NickJD/ORForise
Contributors 3https://patch-diff.githubusercontent.com/NickJD/ORForise/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/NickJD/ORForise
Python 100.0% https://patch-diff.githubusercontent.com/NickJD/ORForise/search?l=python
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.