René's URL Explorer Experiment


Title: GitHub - MPUSP/snakemake-assembly-postprocessing: A Snakemake workflow for the post-processing of microbial genome assemblies.

Open Graph Title: GitHub - MPUSP/snakemake-assembly-postprocessing: A Snakemake workflow for the post-processing of microbial genome assemblies.

X Title: GitHub - MPUSP/snakemake-assembly-postprocessing: A Snakemake workflow for the post-processing of microbial genome assemblies.

Description: A Snakemake workflow for the post-processing of microbial genome assemblies. - MPUSP/snakemake-assembly-postprocessing

Open Graph Description: A Snakemake workflow for the post-processing of microbial genome assemblies. - MPUSP/snakemake-assembly-postprocessing

X Description: A Snakemake workflow for the post-processing of microbial genome assemblies. - MPUSP/snakemake-assembly-postprocessing

Opengraph URL: https://github.com/MPUSP/snakemake-assembly-postprocessing

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:a74a5f3c-5f0b-982f-9a88-94ad9da83eea
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id8D72:C2770:41509C4:5993CB4:698CA9E8
html-safe-noncedd7453bde74ecbb452105343ad1547210083f2ee1f32a8556cdccd2fdd8188ac
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4RDcyOkMyNzcwOjQxNTA5QzQ6NTk5M0NCNDo2OThDQTlFOCIsInZpc2l0b3JfaWQiOiIyNTY3NzgzNjMwMzI0NDEwODU2IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmacd24c40cb112f9c0bf3cfab4bdb525f133ed5a5f91400600b0db9e49023d30c8b
hovercard-subject-tagrepository:1108339903
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/MPUSP/snakemake-assembly-postprocessing
twitter:imagehttps://opengraph.githubassets.com/a11e75850b009ba830a92d1b3995cc0edf8204280e6c00f6bbf3d1d5525a7e73/MPUSP/snakemake-assembly-postprocessing
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/a11e75850b009ba830a92d1b3995cc0edf8204280e6c00f6bbf3d1d5525a7e73/MPUSP/snakemake-assembly-postprocessing
og:image:altA Snakemake workflow for the post-processing of microbial genome assemblies. - MPUSP/snakemake-assembly-postprocessing
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None640eeb7b6ff4d8d106235d228c0c286e82592d4d2403227b5b2b4fc5832297a4
turbo-cache-controlno-preview
go-importgithub.com/MPUSP/snakemake-assembly-postprocessing git https://github.com/MPUSP/snakemake-assembly-postprocessing.git
octolytics-dimension-user_id81688252
octolytics-dimension-user_loginMPUSP
octolytics-dimension-repository_id1108339903
octolytics-dimension-repository_nwoMPUSP/snakemake-assembly-postprocessing
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id1108339903
octolytics-dimension-repository_network_root_nwoMPUSP/snakemake-assembly-postprocessing
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release3d444f0a47beeeac94cddbb51c91ab408befe8d4
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FMPUSP%2Fsnakemake-assembly-postprocessing
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FMPUSP%2Fsnakemake-assembly-postprocessing
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=MPUSP%2Fsnakemake-assembly-postprocessing
Reloadhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing
Reloadhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing
Reloadhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing
MPUSP https://patch-diff.githubusercontent.com/MPUSP
snakemake-assembly-postprocessinghttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FMPUSP%2Fsnakemake-assembly-postprocessing
Fork 0 https://patch-diff.githubusercontent.com/login?return_to=%2FMPUSP%2Fsnakemake-assembly-postprocessing
Star 1 https://patch-diff.githubusercontent.com/login?return_to=%2FMPUSP%2Fsnakemake-assembly-postprocessing
MIT license https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/blob/main/LICENSE
1 star https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/stargazers
0 forks https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/forks
Branches https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/branches
Tags https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/tags
Activity https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FMPUSP%2Fsnakemake-assembly-postprocessing
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FMPUSP%2Fsnakemake-assembly-postprocessing
Code https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing
Issues 0 https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/issues
Pull requests 0 https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/pulls
Actions https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/actions
Projects 0 https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/projects
Security 0 https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/security
Insights https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/pulse
Code https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing
Issues https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/issues
Pull requests https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/pulls
Actions https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/actions
Projects https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/projects
Security https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/security
Insights https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/pulse
Brancheshttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/branches
Tagshttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/tags
https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/branches
https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/tags
30 Commitshttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/commits/main/
https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/commits/main/
.github/workflowshttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/tree/main/.github/workflows
.github/workflowshttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/tree/main/.github/workflows
.testhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/tree/main/.test
.testhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/tree/main/.test
confighttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/tree/main/config
confighttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/tree/main/config
resourceshttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/tree/main/resources
resourceshttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/tree/main/resources
workflowhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/tree/main/workflow
workflowhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/tree/main/workflow
.gitignorehttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/blob/main/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/blob/main/.gitignore
.snakemake-workflow-catalog.ymlhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/blob/main/.snakemake-workflow-catalog.yml
.snakemake-workflow-catalog.ymlhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/blob/main/.snakemake-workflow-catalog.yml
CHANGELOG.mdhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/blob/main/CHANGELOG.md
CHANGELOG.mdhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/blob/main/CHANGELOG.md
LICENSEhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/blob/main/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/blob/main/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/blob/main/README.md
READMEhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing
MIT licensehttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing
https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing#snakemake-assembly-postprocessing
https://snakemake.github.io
https://github.com/MPUSP/snakemake-assembly-postprocessing/actions/workflows/main.yml
https://docs.conda.io/en/latest/
https://apptainer.org/
https://snakemake.github.io/snakemake-workflow-catalog/docs/workflows/MPUSP/snakemake-assembly-postprocessing
snakemake-assembly-postprocessinghttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing#snakemake-assembly-postprocessing
Usagehttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing#usage
Workflow overviewhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing#workflow-overview
Installationhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing#installation
Deployment optionshttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing#deployment-options
Authorshttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing#authors
Referenceshttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing#references
https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing#usage
Snakemake Workflow Cataloghttps://snakemake.github.io/snakemake-workflow-catalog/docs/workflows/MPUSP/snakemake-assembly-postprocessing
config/README.mdhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/blob/main/config/README.md
https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/blob/main/resources/images/dag.svg
https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing#workflow-overview
PGAPhttps://github.com/ncbi/pgap
prokkahttps://github.com/tseemann/prokka
baktahttps://github.com/oschwengers/bakta
Quasthttps://github.com/ablab/quast
Panaroohttps://gthlab.au/panaroo/
https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing#installation
Miniforgehttps://conda-forge.org/download/
PGAPhttps://github.com/ncbi/pgap
https://github.com/ncbi/pgaphttps://github.com/ncbi/pgap
https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing#deployment-options
https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing#authors
Max-Planck-Unit for the Science of Pathogenshttps://www.mpusp.mpg.de/
https://orcid.org/0000-0002-0656-1795https://orcid.org/0000-0002-0656-1795
Max-Planck-Unit for the Science of Pathogenshttps://www.mpusp.mpg.de/
https://orcid.org/0000-0002-3913-153Xhttps://orcid.org/0000-0002-3913-153X
https://github.com/m-jahnhttps://github.com/m-jahn
https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing#references
https://doi.org/10.1093/bioinformatics/btu153https://doi.org/10.1093/bioinformatics/btu153
https://doi.org/10.1099/mgen.0.000685https://doi.org/10.1099/mgen.0.000685
https://doi.org/10.1093/nar/gkaa1105https://doi.org/10.1093/nar/gkaa1105
https://doi.org/10.1093/bioinformatics/btt086https://doi.org/10.1093/bioinformatics/btt086
https://doi.org/10.1186/s13059-020-02090-4https://doi.org/10.1186/s13059-020-02090-4
https://doi.org/10.12688/f1000research.29032.2https://doi.org/10.12688/f1000research.29032.2
quality-control https://patch-diff.githubusercontent.com/topics/quality-control
pipeline https://patch-diff.githubusercontent.com/topics/pipeline
genomics https://patch-diff.githubusercontent.com/topics/genomics
conda https://patch-diff.githubusercontent.com/topics/conda
bacteria https://patch-diff.githubusercontent.com/topics/bacteria
genome-sequencing https://patch-diff.githubusercontent.com/topics/genome-sequencing
genome-assembly https://patch-diff.githubusercontent.com/topics/genome-assembly
postprocessing https://patch-diff.githubusercontent.com/topics/postprocessing
snakemake-workflow https://patch-diff.githubusercontent.com/topics/snakemake-workflow
microbes https://patch-diff.githubusercontent.com/topics/microbes
apptainer https://patch-diff.githubusercontent.com/topics/apptainer
Readme https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing#readme-ov-file
MIT license https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing#MIT-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing
Activityhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/activity
Custom propertieshttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/custom-properties
1 starhttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/stargazers
0 watchinghttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/watchers
0 forkshttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FMPUSP%2Fsnakemake-assembly-postprocessing&report=MPUSP+%28user%29
Releases 2https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/releases
v1.1.0 Latest Dec 10, 2025 https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/releases/tag/v1.1.0
+ 1 releasehttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/MPUSP/packages?repo_name=snakemake-assembly-postprocessing
Contributors 2https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing
Python 100.0% https://patch-diff.githubusercontent.com/MPUSP/snakemake-assembly-postprocessing/search?l=python
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.