René's URL Explorer Experiment


Title: GitHub - KosinskiLab/AlphaPulldown

Open Graph Title: GitHub - KosinskiLab/AlphaPulldown

X Title: GitHub - KosinskiLab/AlphaPulldown

Description: Contribute to KosinskiLab/AlphaPulldown development by creating an account on GitHub.

Open Graph Description: Contribute to KosinskiLab/AlphaPulldown development by creating an account on GitHub.

X Description: Contribute to KosinskiLab/AlphaPulldown development by creating an account on GitHub.

Opengraph URL: https://github.com/KosinskiLab/AlphaPulldown

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:5eab7891-8f01-3faa-c043-446954b3a59c
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id8378:21227D:40E8CC0:53DBC0D:69803285
html-safe-nonce834c23ba2b2a9e414ba04099294af0986b4bc356d45ef8a99bf070ee418a0e46
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4Mzc4OjIxMjI3RDo0MEU4Q0MwOjUzREJDMEQ6Njk4MDMyODUiLCJ2aXNpdG9yX2lkIjoiMTQxMTEzMDY1ODEyOTk4MjA4NSIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmacfc55290054aa1a4dd97af11959f6582d889d2f9e36cf410d2a4f89f9b62d6d8b
hovercard-subject-tagrepository:506266267
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/KosinskiLab/AlphaPulldown
twitter:imagehttps://opengraph.githubassets.com/4f27f8b9cd07e23079eda27f8ee403f5d50591eed2603442a1cc6f63b6de77c9/KosinskiLab/AlphaPulldown
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/4f27f8b9cd07e23079eda27f8ee403f5d50591eed2603442a1cc6f63b6de77c9/KosinskiLab/AlphaPulldown
og:image:altContribute to KosinskiLab/AlphaPulldown development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None60279d4097367e16897439d16d6bbe4180663db828c666eeed2656988ffe59f6
turbo-cache-controlno-preview
go-importgithub.com/KosinskiLab/AlphaPulldown git https://github.com/KosinskiLab/AlphaPulldown.git
octolytics-dimension-user_id26287682
octolytics-dimension-user_loginKosinskiLab
octolytics-dimension-repository_id506266267
octolytics-dimension-repository_nwoKosinskiLab/AlphaPulldown
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id506266267
octolytics-dimension-repository_network_root_nwoKosinskiLab/AlphaPulldown
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release7c85641c598ad130c74f7bcc27f58575cac69551
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FKosinskiLab%2FAlphaPulldown
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FKosinskiLab%2FAlphaPulldown
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=KosinskiLab%2FAlphaPulldown
Reloadhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown
Reloadhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown
Reloadhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown
KosinskiLab https://patch-diff.githubusercontent.com/KosinskiLab
AlphaPulldownhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FKosinskiLab%2FAlphaPulldown
Fork 58 https://patch-diff.githubusercontent.com/login?return_to=%2FKosinskiLab%2FAlphaPulldown
Star 302 https://patch-diff.githubusercontent.com/login?return_to=%2FKosinskiLab%2FAlphaPulldown
doi.org/10.1093/bioinformatics/btac749https://doi.org/10.1093/bioinformatics/btac749
GPL-3.0 license https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/LICENSE
302 stars https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/stargazers
58 forks https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/forks
Branches https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/branches
Tags https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/tags
Activity https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FKosinskiLab%2FAlphaPulldown
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FKosinskiLab%2FAlphaPulldown
Code https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown
Issues 30 https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/issues
Pull requests 0 https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/pulls
Discussions https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/discussions
Actions https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/actions
Projects 0 https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/projects
Wiki https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/wiki
Security 0 https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/security
Insights https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/pulse
Code https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown
Issues https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/issues
Pull requests https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/pulls
Discussions https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/discussions
Actions https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/actions
Projects https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/projects
Wiki https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/wiki
Security https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/security
Insights https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/pulse
Brancheshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/branches
Tagshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/tags
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/branches
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/tags
1,713 Commitshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/commits/main/
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/commits/main/
.github/workflowshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/tree/main/.github/workflows
.github/workflowshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/tree/main/.github/workflows
AlphaLink2 @ 44f4bf2https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tree/44f4bf2aa6b60a8f88ae05fdae12d46d967d5648
AlphaLink2 @ 44f4bf2https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tree/44f4bf2aa6b60a8f88ae05fdae12d46d967d5648
ColabFold @ 2dca108https://patch-diff.githubusercontent.com/sokrypton/ColabFold/tree/2dca1083d6351944a32aff4f66290a961da744b0
ColabFold @ 2dca108https://patch-diff.githubusercontent.com/sokrypton/ColabFold/tree/2dca1083d6351944a32aff4f66290a961da744b0
alphafold @ af1e26bhttps://patch-diff.githubusercontent.com/KosinskiLab/alphafold/tree/af1e26b4ec844054e035de2d62e3c72baef49f71
alphafold @ af1e26bhttps://patch-diff.githubusercontent.com/KosinskiLab/alphafold/tree/af1e26b4ec844054e035de2d62e3c72baef49f71
alphafold3 @ 2e3703ehttps://patch-diff.githubusercontent.com/google-deepmind/alphafold3/tree/2e3703e82a9592efbb3fa76ca9e0714aedabacdb
alphafold3 @ 2e3703ehttps://patch-diff.githubusercontent.com/google-deepmind/alphafold3/tree/2e3703e82a9592efbb3fa76ca9e0714aedabacdb
alphapulldownhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/tree/main/alphapulldown
alphapulldownhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/tree/main/alphapulldown
dockerhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/tree/main/docker
dockerhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/tree/main/docker
manualshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/tree/main/manuals
manualshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/tree/main/manuals
testhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/tree/main/test
testhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/tree/main/test
.gitignorehttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/.gitignore
.gitmoduleshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/.gitmodules
.gitmoduleshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/.gitmodules
LICENSEhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/LICENSE
MANIFEST.inhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/MANIFEST.in
MANIFEST.inhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/MANIFEST.in
README.mdhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/README.md
conftest.pyhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/conftest.py
conftest.pyhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/conftest.py
environment.ymlhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/environment.yml
environment.ymlhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/environment.yml
pytest.inihttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/pytest.ini
pytest.inihttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/pytest.ini
setup.cfghttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/setup.cfg
setup.cfghttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/setup.cfg
setup.pyhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/setup.py
setup.pyhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/blob/main/setup.py
READMEhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown
GPL-3.0 licensehttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#alphapulldown-v2x
Documentationhttps://github.com/KosinskiLab/AlphaPulldown/wiki
Precalculated Input Databasehttps://github.com/KosinskiLab/AlphaPulldown/wiki/Features-Database
Downstream Analysishttps://github.com/KosinskiLab/AlphaPulldown/wiki/Downstream-Analysis
AlphaPulldownSnakemakehttps://github.com/KosinskiLab/AlphaPulldownSnakemake
config/config.yamlhttps://github.com/KosinskiLab/AlphaPulldownSnakemake/blob/main/config/config.yaml
linkhttps://github.com/KosinskiLab/AlphaPulldown/wiki
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#1-installation
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#2-configuration
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#create-a-working-directory
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#setup-protein-folding-jobs
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#configure-input-files
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#setup-pulldown-experiments
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#3-execution
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#4-results
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#recommended-explore-results-with-aplit
APLithttps://github.com/KosinskiLab/aplit
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#advanced-configuration
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#slurm-defaults-for-structure-inference
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#using-precomputed-features
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#feature-generation-flags-create_individual_featurespy
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#structure-analysis--reporting
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#changing-folding-backends
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#backend-specific-flags
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#database-configuration
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#how-to-cite
the corresponding publicationhttps://doi.org/10.1093/bioinformatics/btaf115
doi.org/10.1093/bioinformatics/btac749https://doi.org/10.1093/bioinformatics/btac749
Readme https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#readme-ov-file
GPL-3.0 license https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown#GPL-3.0-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown
Activityhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/activity
Custom propertieshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/custom-properties
302 starshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/stargazers
10 watchinghttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/watchers
58 forkshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FKosinskiLab%2FAlphaPulldown&report=KosinskiLab+%28user%29
Releases 31https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/releases
AlphaPulldown v2.1.5 Latest Nov 13, 2025 https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/releases/tag/2.1.5
+ 30 releaseshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/KosinskiLab/packages?repo_name=AlphaPulldown
Please reload this pagehttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown
Contributors 17https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown
+ 3 contributorshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/graphs/contributors
Python 88.8% https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/search?l=python
Shell 9.2% https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/search?l=shell
Dockerfile 2.0% https://patch-diff.githubusercontent.com/KosinskiLab/AlphaPulldown/search?l=dockerfile
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.