René's URL Explorer Experiment


Title: GitHub - KosinskiLab/AlphaLink2: AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer

Open Graph Title: GitHub - KosinskiLab/AlphaLink2: AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer

X Title: GitHub - KosinskiLab/AlphaLink2: AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer

Description: AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer - GitHub - KosinskiLab/AlphaLink2: AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer

Open Graph Description: AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer - GitHub - KosinskiLab/AlphaLink2: AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer

X Description: AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer - GitHub - KosinskiLab/AlphaLink2: AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer

Opengraph URL: https://github.com/KosinskiLab/AlphaLink2

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:5542e8ba-7412-6255-bd14-ea5bc151a467
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id9F7E:101868:1EF2CE3:2A269C2:69807C4C
html-safe-nonce20ae54f1e720277005e08b9fb86a2e51daa64aad4a3030d8123b00bbf24958ab
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5RjdFOjEwMTg2ODoxRUYyQ0UzOjJBMjY5QzI6Njk4MDdDNEMiLCJ2aXNpdG9yX2lkIjoiODE3MjY2MzgzMjE3NTQ3NTc4OCIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac1573f302d6327c45def3c32539cd7d86ac02b89733b0ec43d47de6a37e858088
hovercard-subject-tagrepository:880887270
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/KosinskiLab/AlphaLink2
twitter:imagehttps://opengraph.githubassets.com/9646ba90d2270522f7a5f0850ec04e3559408a2b14cf879aef3e042dafe53490/KosinskiLab/AlphaLink2
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/9646ba90d2270522f7a5f0850ec04e3559408a2b14cf879aef3e042dafe53490/KosinskiLab/AlphaLink2
og:image:altAlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer - GitHub - KosinskiLab/AlphaLink2: AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None4590f1c00c56e5b3a3460b81e4236454a157a2159793b09a2ddee090670e75fb
turbo-cache-controlno-preview
go-importgithub.com/KosinskiLab/AlphaLink2 git https://github.com/KosinskiLab/AlphaLink2.git
octolytics-dimension-user_id26287682
octolytics-dimension-user_loginKosinskiLab
octolytics-dimension-repository_id880887270
octolytics-dimension-repository_nwoKosinskiLab/AlphaLink2
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forktrue
octolytics-dimension-repository_parent_id722559982
octolytics-dimension-repository_parent_nwodingquanyu/AlphaLink2
octolytics-dimension-repository_network_root_id644977084
octolytics-dimension-repository_network_root_nwoRappsilber-Laboratory/AlphaLink2
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release242fda17fe105562f9eb7fe91a7a0dca07c527b3
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FKosinskiLab%2FAlphaLink2
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FKosinskiLab%2FAlphaLink2
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=KosinskiLab%2FAlphaLink2
Reloadhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2
Reloadhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2
Reloadhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2
KosinskiLab https://patch-diff.githubusercontent.com/KosinskiLab
AlphaLink2https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2
dingquanyu/AlphaLink2https://patch-diff.githubusercontent.com/dingquanyu/AlphaLink2
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FKosinskiLab%2FAlphaLink2
Fork 0 https://patch-diff.githubusercontent.com/login?return_to=%2FKosinskiLab%2FAlphaLink2
Star 1 https://patch-diff.githubusercontent.com/login?return_to=%2FKosinskiLab%2FAlphaLink2
CC-BY-4.0 license https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/blob/main/LICENSE
1 star https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/stargazers
21 forks https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/forks
Branches https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/branches
Tags https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tags
Activity https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FKosinskiLab%2FAlphaLink2
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FKosinskiLab%2FAlphaLink2
Code https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2
Pull requests 0 https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/pulls
Actions https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/actions
Projects 0 https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/projects
Security 0 https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/security
Insights https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/pulse
Code https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2
Pull requests https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/pulls
Actions https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/actions
Projects https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/projects
Security https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/security
Insights https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/pulse
Brancheshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/branches
Tagshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tags
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/branches
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tags
67 Commitshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/commits/main/
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/commits/main/
benchmarkhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tree/main/benchmark
benchmarkhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tree/main/benchmark
dockerhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tree/main/docker
dockerhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tree/main/docker
evaluationhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tree/main/evaluation
evaluationhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tree/main/evaluation
example_datahttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tree/main/example_data
example_datahttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tree/main/example_data
imghttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tree/main/img
imghttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tree/main/img
notebookshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tree/main/notebooks
notebookshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tree/main/notebooks
scriptshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tree/main/scripts
scriptshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tree/main/scripts
unifoldhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tree/main/unifold
unifoldhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/tree/main/unifold
LICENSEhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/blob/main/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/blob/main/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/blob/main/README.md
generate_crosslink_pickle.pyhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/blob/main/generate_crosslink_pickle.py
generate_crosslink_pickle.pyhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/blob/main/generate_crosslink_pickle.py
inference.pyhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/blob/main/inference.py
inference.pyhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/blob/main/inference.py
run_alphalink.shhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/blob/main/run_alphalink.sh
run_alphalink.shhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/blob/main/run_alphalink.sh
setup.pyhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/blob/main/setup.py
setup.pyhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/blob/main/setup.py
READMEhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2
Licensehttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#alphalink2-modelling-protein-complexes-with-crosslinking-mass-spectrometry-and-deep-learning
"Modelling protein complexes with crosslinking mass spectrometry and deep learning"https://www.biorxiv.org/content/10.1101/2023.06.07.544059v2
AlphaLinkhttps://github.com/lhatsk/AlphaLink
Uni-Foldhttps://github.com/dptech-corp/Uni-Fold
networkshttps://doi.org/10.5281/zenodo.8007238
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/blob/main/img/figure_github.png
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#running-alphalink-in-colabfold
herehttps://colab.research.google.com/github/Rappsilber-Laboratory/AlphaLink2/blob/main/notebooks/alphalink2.ipynb
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#crosslink-input-format
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#installation-and-preparations
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#installing-alphalink-from-scratch-with-conda-pip
https://github.com/kalininalab/alphafold_non_dockerhttps://github.com/kalininalab/alphafold_non_docker
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#create-new-conda-environment
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#install-uni-core
Uni-Core from scratch.https://github.com/dptech-corp/Uni-Core#installation
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#install-utilities
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#install-alphafold---necessary-for-relax
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#databases
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#install-alphalink2
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#model-weights
https://doi.org/10.5281/zenodo.8007238
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#running-alphalink
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#hardware-requirements
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#citing-this-work
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#acknowledgements
Uni-Foldhttps://github.com/dptech-corp/Uni-Fold
AlphaFoldhttps://github.com/deepmind/alphafold/
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#code-license
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#model-parameters-license
https://creativecommons.org/licenses/by/4.0/legalcodehttps://creativecommons.org/licenses/by/4.0/legalcode
https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#third-party-software
Acknowledgementshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/blob/main/README.md/#acknowledgements
Readme https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#readme-ov-file
CC-BY-4.0 license https://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2#CC-BY-4.0-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2
Activityhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/activity
Custom propertieshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/custom-properties
1 starhttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/stargazers
0 watchinghttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/watchers
0 forkshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FKosinskiLab%2FAlphaLink2&report=KosinskiLab+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/KosinskiLab/AlphaLink2/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/KosinskiLab/packages?repo_name=AlphaLink2
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.