René's URL Explorer Experiment


Title: GitHub - JohnsonSingerLab/APECtyper: In silico command line tool for typing Avian Pathogenic Escherichia coli (APEC)

Open Graph Title: GitHub - JohnsonSingerLab/APECtyper: In silico command line tool for typing Avian Pathogenic Escherichia coli (APEC)

X Title: GitHub - JohnsonSingerLab/APECtyper: In silico command line tool for typing Avian Pathogenic Escherichia coli (APEC)

Description: In silico command line tool for typing Avian Pathogenic Escherichia coli (APEC) - JohnsonSingerLab/APECtyper

Open Graph Description: In silico command line tool for typing Avian Pathogenic Escherichia coli (APEC) - JohnsonSingerLab/APECtyper

X Description: In silico command line tool for typing Avian Pathogenic Escherichia coli (APEC) - JohnsonSingerLab/APECtyper

Opengraph URL: https://github.com/JohnsonSingerLab/APECtyper

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:a7515860-fbe4-ce84-f71e-71c2595af7f9
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idB990:1427E7:DB2F435:11D13A85:69771523
html-safe-nonce49bd83b1eaba6c092274a2acb9a5ea9443d8722cd205e4f6a2ee3e91f8edf0a9
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJCOTkwOjE0MjdFNzpEQjJGNDM1OjExRDEzQTg1OjY5NzcxNTIzIiwidmlzaXRvcl9pZCI6IjUzMzA3MjI3ODYwMzExMTM1MDciLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmac0077b59835a84738bdfcddf9401cfcca529d64528904b5074cb915fe46a60588
hovercard-subject-tagrepository:465836808
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/JohnsonSingerLab/APECtyper
twitter:imagehttps://opengraph.githubassets.com/9cd988e68a05d6e8848195587d8f169030dd32de3dc3241bf6ba579730714af0/JohnsonSingerLab/APECtyper
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/9cd988e68a05d6e8848195587d8f169030dd32de3dc3241bf6ba579730714af0/JohnsonSingerLab/APECtyper
og:image:altIn silico command line tool for typing Avian Pathogenic Escherichia coli (APEC) - JohnsonSingerLab/APECtyper
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None01d198479908d09a841b2febe8eb105a81af2af7d81830960fe0971e1f4adc09
turbo-cache-controlno-preview
go-importgithub.com/JohnsonSingerLab/APECtyper git https://github.com/JohnsonSingerLab/APECtyper.git
octolytics-dimension-user_id60759249
octolytics-dimension-user_loginJohnsonSingerLab
octolytics-dimension-repository_id465836808
octolytics-dimension-repository_nwoJohnsonSingerLab/APECtyper
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id465836808
octolytics-dimension-repository_network_root_nwoJohnsonSingerLab/APECtyper
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releasef752335dbbea672610081196a1998e39aec5e14b
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FJohnsonSingerLab%2FAPECtyper
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FJohnsonSingerLab%2FAPECtyper
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=JohnsonSingerLab%2FAPECtyper
Reloadhttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper
Reloadhttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper
Reloadhttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper
JohnsonSingerLab https://patch-diff.githubusercontent.com/JohnsonSingerLab
APECtyperhttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FJohnsonSingerLab%2FAPECtyper
Fork 1 https://patch-diff.githubusercontent.com/login?return_to=%2FJohnsonSingerLab%2FAPECtyper
Star 0 https://patch-diff.githubusercontent.com/login?return_to=%2FJohnsonSingerLab%2FAPECtyper
GPL-3.0 license https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/blob/main/LICENSE
0 stars https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/stargazers
1 fork https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/forks
Branches https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/branches
Tags https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/tags
Activity https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FJohnsonSingerLab%2FAPECtyper
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FJohnsonSingerLab%2FAPECtyper
Code https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper
Issues 0 https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/issues
Pull requests 0 https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/pulls
Actions https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/actions
Projects 0 https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/projects
Security 0 https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/security
Insights https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/pulse
Code https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper
Issues https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/issues
Pull requests https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/pulls
Actions https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/actions
Projects https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/projects
Security https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/security
Insights https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/pulse
Brancheshttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/branches
Tagshttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/tags
https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/branches
https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/tags
134 Commitshttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/commits/main/
https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/commits/main/
binhttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/tree/main/bin
binhttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/tree/main/bin
dbhttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/tree/main/db
dbhttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/tree/main/db
imagehttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/tree/main/image
imagehttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/tree/main/image
.gitignorehttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/blob/main/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/blob/main/.gitignore
APECtyper.shhttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/blob/main/APECtyper.sh
APECtyper.shhttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/blob/main/APECtyper.sh
LICENSEhttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/blob/main/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/blob/main/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/blob/main/README.md
READMEhttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper
GPL-3.0 licensehttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper
https://camo.githubusercontent.com/4f7e0d0b2eb3de8c977c19f21c7250bee9dcbaef07d742736035565ed3a1f2e6/68747470733a2f2f696d672e736869656c64732e696f2f62616467652f76657273696f6e2d312e302e302d626c7565
https://www.gnu.org/licenses/old-licenses/gpl-3.0.en.html
https://www.gnu.org/software/bash/
https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper#apectyper
https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper#description
Johnson et al. in prephttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/blob/main
ECTyperhttps://github.com/phac-nml/ecoli_serotyping
mlsthttps://github.com/tseemann/mlst
custom APEC databasehttps://github.com/JohnsonSingerLab/APEC_VF_database
https://github.com/JohnsonSingerLab/APECtyper/blob/main/image/APEC_typing_scheme.png
https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper#dependencies
ECTyperhttps://github.com/phac-nml/ecoli_serotyping
mlsthttps://github.com/tseemann/mlst
NCBI BLAST+ blastnhttps://www.ncbi.nlm.nih.gov/books/NBK569861/?report=reader&%2F%3Freport=reader
Rhttps://cran.r-project.org
https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper#installation
https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper#check-installation
https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper#usage
https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper#input-requirements
https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper#command-line-options
https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper#basic-usage
https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper#output
https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper#pathotype-output
ECTyper pagehttps://github.com/phac-nml/ecoli_serotyping#quality-control-qc-module
https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper#apec-virulence-gene-output
herehttps://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=FAQ#expect
https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper#citations
doi: 10.1016/j.psj.2022.102009https://pubmed.ncbi.nlm.nih.gov/35952599/
doi: 10.1099/mgen.0.000728https://pubmed.ncbi.nlm.nih.gov/34860150/
https://github.com/tseemann/mlsthttps://github.com/tseemann/mlst
doi: 10.12688/wellcomeopenres.14826.1https://pubmed.ncbi.nlm.nih.gov/30345391/
Readme https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper#readme-ov-file
GPL-3.0 license https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper#GPL-3.0-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper
Activityhttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/activity
Custom propertieshttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/custom-properties
0 starshttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/stargazers
1 watchinghttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/watchers
1 forkhttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FJohnsonSingerLab%2FAPECtyper&report=JohnsonSingerLab+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/JohnsonSingerLab/packages?repo_name=APECtyper
Shell 63.1% https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/search?l=shell
R 36.9% https://patch-diff.githubusercontent.com/JohnsonSingerLab/APECtyper/search?l=r
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.