René's URL Explorer Experiment


Title: GitHub - JaneliaSciComp/msg: Multiplexed Shotgun Genotyping

Open Graph Title: GitHub - JaneliaSciComp/msg: Multiplexed Shotgun Genotyping

X Title: GitHub - JaneliaSciComp/msg: Multiplexed Shotgun Genotyping

Description: Multiplexed Shotgun Genotyping. Contribute to JaneliaSciComp/msg development by creating an account on GitHub.

Open Graph Description: Multiplexed Shotgun Genotyping. Contribute to JaneliaSciComp/msg development by creating an account on GitHub.

X Description: Multiplexed Shotgun Genotyping. Contribute to JaneliaSciComp/msg development by creating an account on GitHub.

Opengraph URL: https://github.com/JaneliaSciComp/msg

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:43c7478a-5f21-090e-197f-c27c2b55b1dd
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idAB92:22057:24A5B7C:3368A5E:6970F7B5
html-safe-nonceb57eef692ed01bd910dc9c77767ac9d1588b69b2cc10420980dc4333cbe13440
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJBQjkyOjIyMDU3OjI0QTVCN0M6MzM2OEE1RTo2OTcwRjdCNSIsInZpc2l0b3JfaWQiOiIzNjk4NDM5NjcyMjc5NjYwNDY5IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmac9db4535998094f70f2f4cad057965fc62bc23064f58b7467aeb441e15998e980
hovercard-subject-tagrepository:2316260
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/JaneliaSciComp/msg
twitter:imagehttps://opengraph.githubassets.com/e13d1dbf9d320ba4f7d6f81d005df0688bb2b3b377a02944036f4c8ab2a1dc0d/JaneliaSciComp/msg
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/e13d1dbf9d320ba4f7d6f81d005df0688bb2b3b377a02944036f4c8ab2a1dc0d/JaneliaSciComp/msg
og:image:altMultiplexed Shotgun Genotyping. Contribute to JaneliaSciComp/msg development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None1b239ebed690c3053869ff31a3b7597834c25673659d63e7b6fd6a9b5d7853de
turbo-cache-controlno-preview
go-importgithub.com/JaneliaSciComp/msg git https://github.com/JaneliaSciComp/msg.git
octolytics-dimension-user_id1020012
octolytics-dimension-user_loginJaneliaSciComp
octolytics-dimension-repository_id2316260
octolytics-dimension-repository_nwoJaneliaSciComp/msg
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id2316260
octolytics-dimension-repository_network_root_nwoJaneliaSciComp/msg
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releaseaeacfd55297f3de5395c83f200ac35d1f474115e
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FJaneliaSciComp%2Fmsg
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FJaneliaSciComp%2Fmsg
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=JaneliaSciComp%2Fmsg
Reloadhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg
Reloadhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg
Reloadhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg
JaneliaSciComp https://patch-diff.githubusercontent.com/JaneliaSciComp
msghttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FJaneliaSciComp%2Fmsg
Fork 12 https://patch-diff.githubusercontent.com/login?return_to=%2FJaneliaSciComp%2Fmsg
Star 11 https://patch-diff.githubusercontent.com/login?return_to=%2FJaneliaSciComp%2Fmsg
genomics.princeton.edu/AndolfattoLab/MSG.htmlhttp://genomics.princeton.edu/AndolfattoLab/MSG.html
11 stars https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/stargazers
12 forks https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/forks
Branches https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/branches
Tags https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tags
Activity https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FJaneliaSciComp%2Fmsg
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FJaneliaSciComp%2Fmsg
Code https://patch-diff.githubusercontent.com/JaneliaSciComp/msg
Issues 18 https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/issues
Pull requests 3 https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/pulls
Actions https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/actions
Projects 0 https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/projects
Wiki https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/wiki
Security Uh oh! There was an error while loading. Please reload this page. https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/security
Please reload this pagehttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg
Insights https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/pulse
Code https://patch-diff.githubusercontent.com/JaneliaSciComp/msg
Issues https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/issues
Pull requests https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/pulls
Actions https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/actions
Projects https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/projects
Wiki https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/wiki
Security https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/security
Insights https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/pulse
Brancheshttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/branches
Tagshttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tags
https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/branches
https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tags
242 Commitshttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/commits/master/
https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/commits/master/
cloudhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tree/master/cloud
cloudhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tree/master/cloud
cmdlinehttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tree/master/cmdline
cmdlinehttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tree/master/cmdline
dependencieshttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tree/master/dependencies
dependencieshttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tree/master/dependencies
examplehttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tree/master/example
examplehttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tree/master/example
example_MSG_toyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tree/master/example_MSG_toy
example_MSG_toyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tree/master/example_MSG_toy
instructionshttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tree/master/instructions
instructionshttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tree/master/instructions
testshttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tree/master/tests
testshttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tree/master/tests
toolshttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tree/master/tools
toolshttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/tree/master/tools
.gitignorehttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/.gitignore
README.mdhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/README.md
TQSfastq.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/TQSfastq.py
TQSfastq.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/TQSfastq.py
Utils.pmhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/Utils.pm
Utils.pmhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/Utils.pm
barcode_splitter.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/barcode_splitter.py
barcode_splitter.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/barcode_splitter.py
breakpoint-widths.Rhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/breakpoint-widths.R
breakpoint-widths.Rhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/breakpoint-widths.R
combine.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/combine.py
combine.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/combine.py
countalleles.chttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/countalleles.c
countalleles.chttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/countalleles.c
create_stats.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/create_stats.py
create_stats.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/create_stats.py
ded.Rhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/ded.R
ded.Rhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/ded.R
extract-ref-alleles.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/extract-ref-alleles.py
extract-ref-alleles.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/extract-ref-alleles.py
fastq_2_fasta.plhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/fastq_2_fasta.pl
fastq_2_fasta.plhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/fastq_2_fasta.pl
filter-sam.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/filter-sam.py
filter-sam.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/filter-sam.py
fit-hmm.Rhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/fit-hmm.R
fit-hmm.Rhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/fit-hmm.R
grepfqparser.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/grepfqparser.py
grepfqparser.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/grepfqparser.py
hmmlib.Rhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/hmmlib.R
hmmlib.Rhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/hmmlib.R
hmmprob_to_est.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/hmmprob_to_est.py
hmmprob_to_est.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/hmmprob_to_est.py
hmmprobs.chttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/hmmprobs.c
hmmprobs.chttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/hmmprobs.c
make-pileups.shhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/make-pileups.sh
make-pileups.shhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/make-pileups.sh
makefilehttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/makefile
makefilehttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/makefile
mapping_functions.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/mapping_functions.py
mapping_functions.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/mapping_functions.py
msg.plhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/msg.pl
msg.plhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/msg.pl
msgCluster.plhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/msgCluster.pl
msgCluster.plhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/msgCluster.pl
msgUpdateParentals.plhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/msgUpdateParentals.pl
msgUpdateParentals.plhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/msgUpdateParentals.pl
msglib.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/msglib.py
msglib.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/msglib.py
parent1or2-hmm.shhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/parent1or2-hmm.sh
parent1or2-hmm.shhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/parent1or2-hmm.sh
parse_BCdata2BWA.plhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/parse_BCdata2BWA.pl
parse_BCdata2BWA.plhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/parse_BCdata2BWA.pl
parse_and_map.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/parse_and_map.py
parse_and_map.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/parse_and_map.py
plot_error.Rhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/plot_error.R
plot_error.Rhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/plot_error.R
print_dependencies.shhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/print_dependencies.sh
print_dependencies.shhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/print_dependencies.sh
reformatFasta4sam.plhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/reformatFasta4sam.pl
reformatFasta4sam.plhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/reformatFasta4sam.pl
send_email.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/send_email.py
send_email.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/send_email.py
summaryPlots.Rhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/summaryPlots.R
summaryPlots.Rhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/summaryPlots.R
summary_mismatch.plhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/summary_mismatch.pl
summary_mismatch.plhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/summary_mismatch.pl
test_dependencies.shhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/test_dependencies.sh
test_dependencies.shhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/test_dependencies.sh
test_dependencies_R.Rhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/test_dependencies_R.R
test_dependencies_R.Rhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/test_dependencies_R.R
test_dependencies_R.shhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/test_dependencies_R.sh
test_dependencies_R.shhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/test_dependencies_R.sh
test_dependencies_executable.shhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/test_dependencies_executable.sh
test_dependencies_executable.shhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/test_dependencies_executable.sh
test_dependencies_perl.plhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/test_dependencies_perl.pl
test_dependencies_perl.plhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/test_dependencies_perl.pl
test_dependencies_python.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/test_dependencies_python.py
test_dependencies_python.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/test_dependencies_python.py
updateRef.plhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/updateRef.pl
updateRef.plhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/updateRef.pl
validate.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/validate.py
validate.pyhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/validate.py
versionhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/version
versionhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/version
write-hmm-data.Rhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/write-hmm-data.R
write-hmm-data.Rhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/blob/master/write-hmm-data.R
READMEhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg
https://patch-diff.githubusercontent.com/JaneliaSciComp/msg#msg-multiplexed-shotgun-genotyping
http://genomics.princeton.edu/AndolfattoLab/MSG.htmlhttp://genomics.princeton.edu/AndolfattoLab/MSG.html
https://github.com/JaneliaSciComp/msghttps://github.com/JaneliaSciComp/msg
http://www.ncbi.nlm.nih.gov/pubmed/21233398http://www.ncbi.nlm.nih.gov/pubmed/21233398
https://github.com/YourePrettyGood/msghttps://github.com/YourePrettyGood/msg
https://patch-diff.githubusercontent.com/JaneliaSciComp/msg#dependencies
http://code.google.com/p/pysam/issues/detail?id=22&can=1&q=dandavison0http://code.google.com/p/pysam/issues/detail?id=22&can=1&q=dandavison0
http://pypi.python.org/pypi/mailerhttp://pypi.python.org/pypi/mailer
https://patch-diff.githubusercontent.com/JaneliaSciComp/msg#installation-instructions
https://patch-diff.githubusercontent.com/JaneliaSciComp/msg#toy-example
https://patch-diff.githubusercontent.com/JaneliaSciComp/msg#example-with-real-data
genomics.princeton.edu/AndolfattoLab/MSG.htmlhttp://genomics.princeton.edu/AndolfattoLab/MSG.html
Readme https://patch-diff.githubusercontent.com/JaneliaSciComp/msg#readme-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg
Activityhttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/activity
Custom propertieshttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/custom-properties
11 starshttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/stargazers
5 watchinghttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/watchers
12 forkshttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FJaneliaSciComp%2Fmsg&report=JaneliaSciComp+%28user%29
Releases 2https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/releases
v0.4.10 Latest Aug 3, 2021 https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/releases/tag/v0.4.10
+ 1 releasehttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/JaneliaSciComp/packages?repo_name=msg
Please reload this pagehttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg
Contributors 6https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/JaneliaSciComp/msg
Python 45.0% https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/search?l=python
R 26.1% https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/search?l=r
Perl 24.4% https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/search?l=perl
Shell 3.2% https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/search?l=shell
C 1.3% https://patch-diff.githubusercontent.com/JaneliaSciComp/msg/search?l=c
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.