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Title: GitHub - HealthML/MFD

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Open Graph Description: Contribute to HealthML/MFD development by creating an account on GitHub.

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https://patch-diff.githubusercontent.com/HealthML/MFD#metadata-guided-feature-disentanglement-for-functional-genomics
https://doi.org/10.1093/bioinformatics/btae403https://doi.org/10.1093/bioinformatics/btae403
https://figshare.com/ndownloader/files/38200983https://figshare.com/ndownloader/files/38200983
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https://snakemake.readthedocs.io/en/stable/https://snakemake.readthedocs.io/en/stable/
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GPN-MSA: an alignment-based DNA language model for genome-wide variant effect predictionhttps://www.biorxiv.org/content/10.1101/2023.10.10.561776v1
huggingfacehttps://huggingface.co/datasets/songlab/human_variants
herehttps://gnomad.broadinstitute.org/
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Current sequence-based models capture gene expression determinants in promoters but mostly ignore distal enhancershttps://genomebiology.biomedcentral.com/articles/10.1186/s13059-023-02899-9
GTEx data from the eQTL-cataloghttps://www.ebi.ac.uk/eqtl/Methods/
herehttps://www.science.org/doi/10.1126/science.aaz1776
https://patch-diff.githubusercontent.com/HealthML/MFD#rule-predict_and_evaluate_gtex_finemapped_variants
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