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Title: GitHub - FunctionLab/otari: code to run Otari and obtain Otari predictions

Open Graph Title: GitHub - FunctionLab/otari: code to run Otari and obtain Otari predictions

X Title: GitHub - FunctionLab/otari: code to run Otari and obtain Otari predictions

Description: code to run Otari and obtain Otari predictions. Contribute to FunctionLab/otari development by creating an account on GitHub.

Open Graph Description: code to run Otari and obtain Otari predictions. Contribute to FunctionLab/otari development by creating an account on GitHub.

X Description: code to run Otari and obtain Otari predictions. Contribute to FunctionLab/otari development by creating an account on GitHub.

Mail addresses
aviya@princeton.edu

Opengraph URL: https://github.com/FunctionLab/otari

X: @github

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