René's URL Explorer Experiment


Title: GitHub - FoxoTech/methylize: Python-based Illumina methylation array analysis software

Open Graph Title: GitHub - FoxoTech/methylize: Python-based Illumina methylation array analysis software

X Title: GitHub - FoxoTech/methylize: Python-based Illumina methylation array analysis software

Description: Python-based Illumina methylation array analysis software - FoxoTech/methylize

Open Graph Description: Python-based Illumina methylation array analysis software - FoxoTech/methylize

X Description: Python-based Illumina methylation array analysis software - FoxoTech/methylize

Opengraph URL: https://github.com/FoxoTech/methylize

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:74f12bee-3494-9a1c-eeee-2c06437a8a59
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idB964:1461DE:17188E1:1F83CA0:698C6315
html-safe-nonceaf0d693accdb7efeedbf9ee71fce999d07c8ccef5284d267f82374ba495896eb
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJCOTY0OjE0NjFERToxNzE4OEUxOjFGODNDQTA6Njk4QzYzMTUiLCJ2aXNpdG9yX2lkIjoiOTk0ODQ0NTc3OTE4Mzc4NzczIiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmac0bd5acefda3f9187097cec54acf8fd0e22d9d15e26fb64ea2c75c413f68d6e01
hovercard-subject-tagrepository:154184459
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/FoxoTech/methylize
twitter:imagehttps://repository-images.githubusercontent.com/154184459/7b9c6e00-fcaa-11e9-90a7-64dca9d74231
twitter:cardsummary_large_image
og:imagehttps://repository-images.githubusercontent.com/154184459/7b9c6e00-fcaa-11e9-90a7-64dca9d74231
og:image:altPython-based Illumina methylation array analysis software - FoxoTech/methylize
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None640eeb7b6ff4d8d106235d228c0c286e82592d4d2403227b5b2b4fc5832297a4
turbo-cache-controlno-preview
go-importgithub.com/FoxoTech/methylize git https://github.com/FoxoTech/methylize.git
octolytics-dimension-user_id35784106
octolytics-dimension-user_loginFoxoTech
octolytics-dimension-repository_id154184459
octolytics-dimension-repository_nwoFoxoTech/methylize
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id154184459
octolytics-dimension-repository_network_root_nwoFoxoTech/methylize
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release3d444f0a47beeeac94cddbb51c91ab408befe8d4
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/FoxoTech/methylize#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FFoxoTech%2Fmethylize
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FFoxoTech%2Fmethylize
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=FoxoTech%2Fmethylize
Reloadhttps://patch-diff.githubusercontent.com/FoxoTech/methylize
Reloadhttps://patch-diff.githubusercontent.com/FoxoTech/methylize
Reloadhttps://patch-diff.githubusercontent.com/FoxoTech/methylize
FoxoTech https://patch-diff.githubusercontent.com/FoxoTech
methylizehttps://patch-diff.githubusercontent.com/FoxoTech/methylize
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FFoxoTech%2Fmethylize
Fork 7 https://patch-diff.githubusercontent.com/login?return_to=%2FFoxoTech%2Fmethylize
Star 16 https://patch-diff.githubusercontent.com/login?return_to=%2FFoxoTech%2Fmethylize
MIT license https://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/LICENSE.txt
16 stars https://patch-diff.githubusercontent.com/FoxoTech/methylize/stargazers
7 forks https://patch-diff.githubusercontent.com/FoxoTech/methylize/forks
Branches https://patch-diff.githubusercontent.com/FoxoTech/methylize/branches
Tags https://patch-diff.githubusercontent.com/FoxoTech/methylize/tags
Activity https://patch-diff.githubusercontent.com/FoxoTech/methylize/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FFoxoTech%2Fmethylize
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FFoxoTech%2Fmethylize
Code https://patch-diff.githubusercontent.com/FoxoTech/methylize
Issues 7 https://patch-diff.githubusercontent.com/FoxoTech/methylize/issues
Pull requests 1 https://patch-diff.githubusercontent.com/FoxoTech/methylize/pulls
Actions https://patch-diff.githubusercontent.com/FoxoTech/methylize/actions
Projects 0 https://patch-diff.githubusercontent.com/FoxoTech/methylize/projects
Security 0 https://patch-diff.githubusercontent.com/FoxoTech/methylize/security
Insights https://patch-diff.githubusercontent.com/FoxoTech/methylize/pulse
Code https://patch-diff.githubusercontent.com/FoxoTech/methylize
Issues https://patch-diff.githubusercontent.com/FoxoTech/methylize/issues
Pull requests https://patch-diff.githubusercontent.com/FoxoTech/methylize/pulls
Actions https://patch-diff.githubusercontent.com/FoxoTech/methylize/actions
Projects https://patch-diff.githubusercontent.com/FoxoTech/methylize/projects
Security https://patch-diff.githubusercontent.com/FoxoTech/methylize/security
Insights https://patch-diff.githubusercontent.com/FoxoTech/methylize/pulse
Brancheshttps://patch-diff.githubusercontent.com/FoxoTech/methylize/branches
Tagshttps://patch-diff.githubusercontent.com/FoxoTech/methylize/tags
https://patch-diff.githubusercontent.com/FoxoTech/methylize/branches
https://patch-diff.githubusercontent.com/FoxoTech/methylize/tags
73 Commitshttps://patch-diff.githubusercontent.com/FoxoTech/methylize/commits/master/
https://patch-diff.githubusercontent.com/FoxoTech/methylize/commits/master/
.circlecihttps://patch-diff.githubusercontent.com/FoxoTech/methylize/tree/master/.circleci
.circlecihttps://patch-diff.githubusercontent.com/FoxoTech/methylize/tree/master/.circleci
.github/workflowshttps://patch-diff.githubusercontent.com/FoxoTech/methylize/tree/master/.github/workflows
.github/workflowshttps://patch-diff.githubusercontent.com/FoxoTech/methylize/tree/master/.github/workflows
bumphunterhttps://patch-diff.githubusercontent.com/FoxoTech/methylize/tree/master/bumphunter
bumphunterhttps://patch-diff.githubusercontent.com/FoxoTech/methylize/tree/master/bumphunter
datahttps://patch-diff.githubusercontent.com/FoxoTech/methylize/tree/master/data
datahttps://patch-diff.githubusercontent.com/FoxoTech/methylize/tree/master/data
docshttps://patch-diff.githubusercontent.com/FoxoTech/methylize/tree/master/docs
docshttps://patch-diff.githubusercontent.com/FoxoTech/methylize/tree/master/docs
methylizehttps://patch-diff.githubusercontent.com/FoxoTech/methylize/tree/master/methylize
methylizehttps://patch-diff.githubusercontent.com/FoxoTech/methylize/tree/master/methylize
testshttps://patch-diff.githubusercontent.com/FoxoTech/methylize/tree/master/tests
testshttps://patch-diff.githubusercontent.com/FoxoTech/methylize/tree/master/tests
.gitignorehttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/.gitignore
LICENSE.txthttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/LICENSE.txt
LICENSE.txthttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/LICENSE.txt
Pipfilehttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/Pipfile
Pipfilehttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/Pipfile
README.mdhttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/README.md
conf.pyhttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/conf.py
conf.pyhttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/conf.py
index.rsthttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/index.rst
index.rsthttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/index.rst
requirements.txthttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/requirements.txt
requirements.txthttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/requirements.txt
setup.cfghttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/setup.cfg
setup.cfghttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/setup.cfg
setup.pyhttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/setup.py
setup.pyhttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/setup.py
READMEhttps://patch-diff.githubusercontent.com/FoxoTech/methylize
MIT licensehttps://patch-diff.githubusercontent.com/FoxoTech/methylize
ReadTheDocs.https://life-epigenetics-methylize.readthedocs-hosted.com/en/latest/
https://github.com/FoxoTech/methylize/actions/workflows/ci.yml
https://life-epigenetics-methylize.readthedocs-hosted.com/en/latest/
https://opensource.org/licenses/MIT
https://circleci.com/gh/FoxoTech/methylize/tree/master
https://www.codacy.com/gh/FoxoTech/methylize/dashboard?utm_source=github.com&utm_medium=referral&utm_content=FOXOBioScience/methylize&utm_campaign=Badge_Grade
https://coveralls.io/github/FoxoTech/methylize?branch=master
https://camo.githubusercontent.com/872bcedfcae87ddcc8c4e57ac2e7b2e2b23f73b7b2f0ab3528d387fb9058a8da/68747470733a2f2f696d672e736869656c64732e696f2f707970692f646d2f6d657468796c697a652e7376673f6c6162656c3d70797069253230646f776e6c6f616473266c6f676f3d50795049266c6f676f436f6c6f723d7768697465
https://codecov.io/gh/FoxoTech/methylize
https://patch-diff.githubusercontent.com/FoxoTech/methylize#methylize-is-part-of-the-methylsuite
methylsuitehttps://pypi.org/project/methylsuite/
https://patch-diff.githubusercontent.com/FoxoTech/methylize#methylsuite-package-components
https://patch-diff.githubusercontent.com/FoxoTech/methylize#table-of-contents
Differentially methylated position (DMP) regression, detection and visualationhttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/docs/demo_diff_meth_pos.ipynb
Logistic Regressionhttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/docs/methylize_tutorial.html#Differentially-Methylated-Regions-Analysis-with-Binary-Phenotypes
Linear Regressionhttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/docs/methylize_tutorial.html#Differentially-Methylated-Regions-Analysis-with-Continuous-Numeric-Phenotypes
Manhattan Plothttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/docs/methylize_tutorial.html#Manhattan-Plots
Volcano plothttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/docs/methylize_tutorial.html#Volcano-Plot
Differentially methylated regionshttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/docs/diff_meth_regions.md
Gene annotation with the UCSC Human Genome Browserhttps://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/docs/diff_meth_regions.html#gene-annotation-with-ucsc-genome-browser
https://patch-diff.githubusercontent.com/FoxoTech/methylize#installation
https://patch-diff.githubusercontent.com/FoxoTech/methylize#methylize-package
https://patch-diff.githubusercontent.com/FoxoTech/methylize#sample-manhattan-plot
https://github.com/FoxoTech/methylize/blob/master/docs/manhattan_example.png?raw=true
https://github.com/FoxoTech/methylize/blob/master/docs/manhattan_example2.png?raw=true
https://patch-diff.githubusercontent.com/FoxoTech/methylize#sample-volcano-plot
https://github.com/FoxoTech/methylize/blob/master/docs/volcano_example.png?raw=true
https://patch-diff.githubusercontent.com/FoxoTech/methylize#differentially-methylated-positionprobe-dmp-detection
https://patch-diff.githubusercontent.com/FoxoTech/methylize#phenotypes
diff_meth_pos()https://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/docs/source/modules.html#module-methylize.diff_meth_pos
https://patch-diff.githubusercontent.com/FoxoTech/methylize#returns
https://patch-diff.githubusercontent.com/FoxoTech/methylize#differentially-methylated-regions-dmr
diff_meth_regions(stats, array_type)https://patch-diff.githubusercontent.com/FoxoTech/methylize/blob/master/docs/source/modules.html#module-methylize.diff_meth_regions
https://patch-diff.githubusercontent.com/FoxoTech/methylize#loading-processed-data
python https://patch-diff.githubusercontent.com/topics/python
analysis https://patch-diff.githubusercontent.com/topics/analysis
biology https://patch-diff.githubusercontent.com/topics/biology
methylation https://patch-diff.githubusercontent.com/topics/methylation
Readme https://patch-diff.githubusercontent.com/FoxoTech/methylize#readme-ov-file
MIT license https://patch-diff.githubusercontent.com/FoxoTech/methylize#MIT-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/FoxoTech/methylize
Activityhttps://patch-diff.githubusercontent.com/FoxoTech/methylize/activity
Custom propertieshttps://patch-diff.githubusercontent.com/FoxoTech/methylize/custom-properties
16 starshttps://patch-diff.githubusercontent.com/FoxoTech/methylize/stargazers
6 watchinghttps://patch-diff.githubusercontent.com/FoxoTech/methylize/watchers
7 forkshttps://patch-diff.githubusercontent.com/FoxoTech/methylize/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FFoxoTech%2Fmethylize&report=FoxoTech+%28user%29
Releases 2https://patch-diff.githubusercontent.com/FoxoTech/methylize/releases
differentially methylated regions (DMR) Latest Oct 19, 2021 https://patch-diff.githubusercontent.com/FoxoTech/methylize/releases/tag/v0.9.9
+ 1 releasehttps://patch-diff.githubusercontent.com/FoxoTech/methylize/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/FoxoTech/packages?repo_name=methylize
Please reload this pagehttps://patch-diff.githubusercontent.com/FoxoTech/methylize
Contributors 4https://patch-diff.githubusercontent.com/FoxoTech/methylize/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/FoxoTech/methylize
Jupyter Notebook 65.3% https://patch-diff.githubusercontent.com/FoxoTech/methylize/search?l=jupyter-notebook
Python 34.7% https://patch-diff.githubusercontent.com/FoxoTech/methylize/search?l=python
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.