René's URL Explorer Experiment


Title: GitHub - EBIvariation/CMAT: ClinVar Mapping and Annotation Toolkit

Open Graph Title: GitHub - EBIvariation/CMAT: ClinVar Mapping and Annotation Toolkit

X Title: GitHub - EBIvariation/CMAT: ClinVar Mapping and Annotation Toolkit

Description: ClinVar Mapping and Annotation Toolkit. Contribute to EBIvariation/CMAT development by creating an account on GitHub.

Open Graph Description: ClinVar Mapping and Annotation Toolkit. Contribute to EBIvariation/CMAT development by creating an account on GitHub.

X Description: ClinVar Mapping and Annotation Toolkit. Contribute to EBIvariation/CMAT development by creating an account on GitHub.

Opengraph URL: https://github.com/EBIvariation/CMAT

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:7a459efe-a1b4-462e-0f63-98f33cb51c5f
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idDD32:1381AE:102ECEC:16EB0F2:6978D251
html-safe-nonce298e8decbddd87f7c411a9b4669766cbf4e77ae0dbd14bb515741a32cb071c48
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJERDMyOjEzODFBRToxMDJFQ0VDOjE2RUIwRjI6Njk3OEQyNTEiLCJ2aXNpdG9yX2lkIjoiMjUzMjAyNTA4NTUzMTMxMjcyMSIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac378f15bce9167a393a36c3e0e027343d476cc739c40f62ff13aa1c0dcf8489fb
hovercard-subject-tagrepository:53321758
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/EBIvariation/CMAT
twitter:imagehttps://opengraph.githubassets.com/643e7e3173ca4568ed66ea81267ca48061af3f2d193eda7750626be43bc2efcc/EBIvariation/CMAT
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/643e7e3173ca4568ed66ea81267ca48061af3f2d193eda7750626be43bc2efcc/EBIvariation/CMAT
og:image:altClinVar Mapping and Annotation Toolkit. Contribute to EBIvariation/CMAT development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None8a71ca1f7ab5436216e1df86f398ef7a51ed3152c90e3f7332fc70cf97fcb9d6
turbo-cache-controlno-preview
go-importgithub.com/EBIvariation/CMAT git https://github.com/EBIvariation/CMAT.git
octolytics-dimension-user_id6419333
octolytics-dimension-user_loginEBIvariation
octolytics-dimension-repository_id53321758
octolytics-dimension-repository_nwoEBIvariation/CMAT
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id53321758
octolytics-dimension-repository_network_root_nwoEBIvariation/CMAT
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releaseeaed570eead52a9920afef75dc3eb6d826fdc5ef
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/EBIvariation/CMAT#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FEBIvariation%2FCMAT
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FEBIvariation%2FCMAT
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=EBIvariation%2FCMAT
Reloadhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT
Reloadhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT
Reloadhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT
EBIvariation https://patch-diff.githubusercontent.com/EBIvariation
CMAThttps://patch-diff.githubusercontent.com/EBIvariation/CMAT
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FEBIvariation%2FCMAT
Fork 10 https://patch-diff.githubusercontent.com/login?return_to=%2FEBIvariation%2FCMAT
Star 20 https://patch-diff.githubusercontent.com/login?return_to=%2FEBIvariation%2FCMAT
Apache-2.0 license https://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/LICENSE
20 stars https://patch-diff.githubusercontent.com/EBIvariation/CMAT/stargazers
10 forks https://patch-diff.githubusercontent.com/EBIvariation/CMAT/forks
Branches https://patch-diff.githubusercontent.com/EBIvariation/CMAT/branches
Tags https://patch-diff.githubusercontent.com/EBIvariation/CMAT/tags
Activity https://patch-diff.githubusercontent.com/EBIvariation/CMAT/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FEBIvariation%2FCMAT
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FEBIvariation%2FCMAT
Code https://patch-diff.githubusercontent.com/EBIvariation/CMAT
Issues 56 https://patch-diff.githubusercontent.com/EBIvariation/CMAT/issues
Pull requests 0 https://patch-diff.githubusercontent.com/EBIvariation/CMAT/pulls
Discussions https://patch-diff.githubusercontent.com/EBIvariation/CMAT/discussions
Actions https://patch-diff.githubusercontent.com/EBIvariation/CMAT/actions
Projects 0 https://patch-diff.githubusercontent.com/EBIvariation/CMAT/projects
Security 0 https://patch-diff.githubusercontent.com/EBIvariation/CMAT/security
Insights https://patch-diff.githubusercontent.com/EBIvariation/CMAT/pulse
Code https://patch-diff.githubusercontent.com/EBIvariation/CMAT
Issues https://patch-diff.githubusercontent.com/EBIvariation/CMAT/issues
Pull requests https://patch-diff.githubusercontent.com/EBIvariation/CMAT/pulls
Discussions https://patch-diff.githubusercontent.com/EBIvariation/CMAT/discussions
Actions https://patch-diff.githubusercontent.com/EBIvariation/CMAT/actions
Projects https://patch-diff.githubusercontent.com/EBIvariation/CMAT/projects
Security https://patch-diff.githubusercontent.com/EBIvariation/CMAT/security
Insights https://patch-diff.githubusercontent.com/EBIvariation/CMAT/pulse
Brancheshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/branches
Tagshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tags
https://patch-diff.githubusercontent.com/EBIvariation/CMAT/branches
https://patch-diff.githubusercontent.com/EBIvariation/CMAT/tags
1,879 Commitshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/commits/master/
https://patch-diff.githubusercontent.com/EBIvariation/CMAT/commits/master/
.githubhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/.github
.githubhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/.github
.idea/dictionarieshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/.idea/dictionaries
.idea/dictionarieshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/.idea/dictionaries
binhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/bin
binhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/bin
cmathttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/cmat
cmathttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/cmat
compare-evidence-stringshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/compare-evidence-strings
compare-evidence-stringshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/compare-evidence-strings
condahttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/conda
condahttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/conda
data-explorationhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/data-exploration
data-explorationhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/data-exploration
docshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/docs
docshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/docs
mappingshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/mappings
mappingshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/mappings
pipelineshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/pipelines
pipelineshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/pipelines
testshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/tests
testshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/tree/master/tests
.gitignorehttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/.gitignore
.gitlab-ci.ymlhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/.gitlab-ci.yml
.gitlab-ci.ymlhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/.gitlab-ci.yml
LICENSEhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/LICENSE
OT_SCHEMA_VERSIONhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/OT_SCHEMA_VERSION
OT_SCHEMA_VERSIONhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/OT_SCHEMA_VERSION
README.mdhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/README.md
__init__.pyhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/__init__.py
__init__.pyhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/__init__.py
pytest.inihttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/pytest.ini
pytest.inihttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/pytest.ini
requirements-dev.txthttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/requirements-dev.txt
requirements-dev.txthttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/requirements-dev.txt
requirements.txthttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/requirements.txt
requirements.txthttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/requirements.txt
setup.cfghttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/setup.cfg
setup.cfghttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/setup.cfg
setup.pyhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/setup.py
setup.pyhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/setup.py
READMEhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT
Apache-2.0 licensehttps://patch-diff.githubusercontent.com/EBIvariation/CMAT
https://github.com/EBIvariation/CMAT/actions
https://coveralls.io/github/EBIvariation/CMAT?branch=master
https://patch-diff.githubusercontent.com/EBIvariation/CMAT#cmat-clinvar-mapping-and-annotation-toolkit
websitehttps://www.ncbi.nlm.nih.gov/clinvar/
herehttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/docs/open-targets
https://patch-diff.githubusercontent.com/EBIvariation/CMAT#install
Nextflow documentationhttps://www.nextflow.io/docs/latest/getstarted.html
herehttps://github.com/EBIvariation/CMAT/releases
Nextflow confighttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/pipelines/nextflow.config
this listhttps://www.ebi.ac.uk/ols4/ontologies
https://patch-diff.githubusercontent.com/EBIvariation/CMAT#conda
https://patch-diff.githubusercontent.com/EBIvariation/CMAT#run
https://patch-diff.githubusercontent.com/EBIvariation/CMAT#annotation-pipeline
FTPhttps://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/
https://patch-diff.githubusercontent.com/EBIvariation/CMAT#trait-curation
herehttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/docs/manual-curation
https://patch-diff.githubusercontent.com/EBIvariation/CMAT#automatic-mappings-and-curation-spreadsheet-generation
FTPhttps://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/
templatehttps://docs.google.com/spreadsheets/d/1GWAQAZjOpzsIkdCu0CSRDoehZEUB3VjZYYiHWp9Tn7Q/edit?usp=sharing
https://patch-diff.githubusercontent.com/EBIvariation/CMAT#manual-curation
herehttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/blob/master/docs/manual-curation/step2-manual-curation.md
https://patch-diff.githubusercontent.com/EBIvariation/CMAT#curation-spreadsheet-export
https://patch-diff.githubusercontent.com/EBIvariation/CMAT#library-usage
https://patch-diff.githubusercontent.com/EBIvariation/CMAT#citation
doi:10.1093/bioadv/vbae018https://doi.org/10.1093/bioadv/vbae018
Readme https://patch-diff.githubusercontent.com/EBIvariation/CMAT#readme-ov-file
Apache-2.0 license https://patch-diff.githubusercontent.com/EBIvariation/CMAT#Apache-2.0-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/EBIvariation/CMAT
Activityhttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/activity
Custom propertieshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/custom-properties
20 starshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/stargazers
3 watchinghttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/watchers
10 forkshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FEBIvariation%2FCMAT&report=EBIvariation+%28user%29
Releases 48https://patch-diff.githubusercontent.com/EBIvariation/CMAT/releases
v3.4.3 Latest Jan 27, 2026 https://patch-diff.githubusercontent.com/EBIvariation/CMAT/releases/tag/v3.4.3
+ 47 releaseshttps://patch-diff.githubusercontent.com/EBIvariation/CMAT/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/EBIvariation/packages?repo_name=CMAT
Please reload this pagehttps://patch-diff.githubusercontent.com/EBIvariation/CMAT
Contributors 14https://patch-diff.githubusercontent.com/EBIvariation/CMAT/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/EBIvariation/CMAT
Jupyter Notebook 65.4% https://patch-diff.githubusercontent.com/EBIvariation/CMAT/search?l=jupyter-notebook
Python 32.2% https://patch-diff.githubusercontent.com/EBIvariation/CMAT/search?l=python
Nextflow 1.6% https://patch-diff.githubusercontent.com/EBIvariation/CMAT/search?l=nextflow
Shell 0.8% https://patch-diff.githubusercontent.com/EBIvariation/CMAT/search?l=shell
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.