René's URL Explorer Experiment


Title: GitHub - DessimozLab/foldtree2: foldtree2

Open Graph Title: GitHub - DessimozLab/foldtree2: foldtree2

X Title: GitHub - DessimozLab/foldtree2: foldtree2

Description: foldtree2 . Contribute to DessimozLab/foldtree2 development by creating an account on GitHub.

Open Graph Description: foldtree2 . Contribute to DessimozLab/foldtree2 development by creating an account on GitHub.

X Description: foldtree2 . Contribute to DessimozLab/foldtree2 development by creating an account on GitHub.

Mail addresses
dmoi@unil.ch

Opengraph URL: https://github.com/DessimozLab/foldtree2

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:06986256-bcae-bfcc-79a3-1218d4013794
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idDD4E:11BAEC:477181F:620F03E:6977FDA3
html-safe-nonce5f4256652eb276dafe0007191b48da267bfaa74d5af4e5b6d3d047a8af619a82
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJERDRFOjExQkFFQzo0NzcxODFGOjYyMEYwM0U6Njk3N0ZEQTMiLCJ2aXNpdG9yX2lkIjoiODMxMjkzNzAzNDU2NTU0OTQ3NSIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac18b4359622706618fecad6c7a08568bbd5fbc65f6ac3a91d046468d85b0a38ec
hovercard-subject-tagrepository:699713202
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/DessimozLab/foldtree2
twitter:imagehttps://opengraph.githubassets.com/e3d3a88e375f9da1aae2fabd5c34177cafe4d759c8ddc2b124b678800eb8a9d3/DessimozLab/foldtree2
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/e3d3a88e375f9da1aae2fabd5c34177cafe4d759c8ddc2b124b678800eb8a9d3/DessimozLab/foldtree2
og:image:altfoldtree2 . Contribute to DessimozLab/foldtree2 development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None9306bf4a8c8a88a5945f83e25033fc5e6fb7a05f40c5fca300ac67db7fee56ae
turbo-cache-controlno-preview
go-importgithub.com/DessimozLab/foldtree2 git https://github.com/DessimozLab/foldtree2.git
octolytics-dimension-user_id16049503
octolytics-dimension-user_loginDessimozLab
octolytics-dimension-repository_id699713202
octolytics-dimension-repository_nwoDessimozLab/foldtree2
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id699713202
octolytics-dimension-repository_network_root_nwoDessimozLab/foldtree2
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releasec586ac0f2edbf5b31f9ca03622220a4285e2def8
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FDessimozLab%2Ffoldtree2
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FDessimozLab%2Ffoldtree2
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=DessimozLab%2Ffoldtree2
Reloadhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2
Reloadhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2
Reloadhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2
DessimozLab https://patch-diff.githubusercontent.com/DessimozLab
foldtree2https://patch-diff.githubusercontent.com/DessimozLab/foldtree2
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FDessimozLab%2Ffoldtree2
Fork 3 https://patch-diff.githubusercontent.com/login?return_to=%2FDessimozLab%2Ffoldtree2
Star 6 https://patch-diff.githubusercontent.com/login?return_to=%2FDessimozLab%2Ffoldtree2
AGPL-3.0 license https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/LICENSE.txt
6 stars https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/stargazers
3 forks https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/forks
Branches https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/branches
Tags https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tags
Activity https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FDessimozLab%2Ffoldtree2
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FDessimozLab%2Ffoldtree2
Code https://patch-diff.githubusercontent.com/DessimozLab/foldtree2
Issues 6 https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/issues
Pull requests 0 https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/pulls
Actions https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/actions
Projects 0 https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/projects
Security 0 https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/security
Insights https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/pulse
Code https://patch-diff.githubusercontent.com/DessimozLab/foldtree2
Issues https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/issues
Pull requests https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/pulls
Actions https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/actions
Projects https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/projects
Security https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/security
Insights https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/pulse
Brancheshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/branches
Tagshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tags
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/branches
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tags
318 Commitshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/commits/main/
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/commits/main/
.github/workflowshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tree/main/.github/workflows
.github/workflowshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tree/main/.github/workflows
.ipynb_checkpointshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tree/main/.ipynb_checkpoints
.ipynb_checkpointshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tree/main/.ipynb_checkpoints
__pycache__https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tree/main/__pycache__
__pycache__https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tree/main/__pycache__
alpshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tree/main/alps
alpshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tree/main/alps
docshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tree/main/docs
docshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tree/main/docs
familieshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tree/main/families
familieshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tree/main/families
figureshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tree/main/figures
figureshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tree/main/figures
foldtree2https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tree/main/foldtree2
foldtree2https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tree/main/foldtree2
modelshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tree/main/models
modelshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/tree/main/models
.gitignorehttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/.gitignore
.gitmoduleshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/.gitmodules
.gitmoduleshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/.gitmodules
COMMITMENT_COST_SCHEDULING.mdhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/COMMITMENT_COST_SCHEDULING.md
COMMITMENT_COST_SCHEDULING.mdhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/COMMITMENT_COST_SCHEDULING.md
GITHUB_PAGES_SETUP.mdhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/GITHUB_PAGES_SETUP.md
GITHUB_PAGES_SETUP.mdhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/GITHUB_PAGES_SETUP.md
LEARN_MONODECODER_SYNC.mdhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/LEARN_MONODECODER_SYNC.md
LEARN_MONODECODER_SYNC.mdhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/LEARN_MONODECODER_SYNC.md
LICENSE.txthttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/LICENSE.txt
LICENSE.txthttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/LICENSE.txt
README.mdhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/README.md
config_commitment_scheduling.yamlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/config_commitment_scheduling.yaml
config_commitment_scheduling.yamlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/config_commitment_scheduling.yaml
config_cosine_restarts.yamlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/config_cosine_restarts.yaml
config_cosine_restarts.yamlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/config_cosine_restarts.yaml
config_large_batch.yamlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/config_large_batch.yaml
config_large_batch.yamlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/config_large_batch.yaml
config_linear_warmup.yamlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/config_linear_warmup.yaml
config_linear_warmup.yamlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/config_linear_warmup.yaml
config_multi_gpu_training.yamlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/config_multi_gpu_training.yaml
config_multi_gpu_training.yamlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/config_multi_gpu_training.yaml
config_muon_training.yamlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/config_muon_training.yaml
config_muon_training.yamlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/config_muon_training.yaml
config_notebook_1k_epochs.yamlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/config_notebook_1k_epochs.yaml
config_notebook_1k_epochs.yamlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/config_notebook_1k_epochs.yaml
config_with_warmup.yamlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/config_with_warmup.yaml
config_with_warmup.yamlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/config_with_warmup.yaml
example_config.yamlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/example_config.yaml
example_config.yamlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/example_config.yaml
foldtree2.ymlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/foldtree2.yml
foldtree2.ymlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/foldtree2.yml
logo.pnghttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/logo.png
logo.pnghttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/logo.png
pyproject.tomlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/pyproject.toml
pyproject.tomlhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/pyproject.toml
setup.pyhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/setup.py
setup.pyhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/setup.py
test_chebconv_rework.pyhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/test_chebconv_rework.py
test_chebconv_rework.pyhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/test_chebconv_rework.py
READMEhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2
AGPL-3.0 licensehttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/blob/main/logo.png
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#foldtree2-maximum-likelihood-phylogenetic-tree-inference-from-protein-structures
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#features
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#installation
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#using-pip-and-conda
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#command-line-tools
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#quick-start-using-pretrained-models
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#basic-workflow
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#available-pretrained-models
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#output-files
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#advanced-usage-training-custom-models
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#1-prepare-training-data
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#2-train-custom-models
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#standard-training
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#lightning-based-training-recommended
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#key-training-parameters
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#3-generate-custom-substitution-matrices
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#4-use-your-custom-model
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#training-tips
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#requirements
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#license
https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#author
Readme https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#readme-ov-file
AGPL-3.0 license https://patch-diff.githubusercontent.com/DessimozLab/foldtree2#AGPL-3.0-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2
Activityhttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/activity
Custom propertieshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/custom-properties
6 starshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/stargazers
6 watchinghttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/watchers
3 forkshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FDessimozLab%2Ffoldtree2&report=DessimozLab+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/DessimozLab/foldtree2/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/DessimozLab/packages?repo_name=foldtree2
Jupyter Notebook 98.2% https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/search?l=jupyter-notebook
Python 1.8% https://patch-diff.githubusercontent.com/DessimozLab/foldtree2/search?l=python
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.