René's URL Explorer Experiment


Title: GitHub - DessimozLab/edgehog: Infering ancestral synteny with hierarchical orthologous groups

Open Graph Title: GitHub - DessimozLab/edgehog: Infering ancestral synteny with hierarchical orthologous groups

X Title: GitHub - DessimozLab/edgehog: Infering ancestral synteny with hierarchical orthologous groups

Description: Infering ancestral synteny with hierarchical orthologous groups - DessimozLab/edgehog

Open Graph Description: Infering ancestral synteny with hierarchical orthologous groups - DessimozLab/edgehog

X Description: Infering ancestral synteny with hierarchical orthologous groups - DessimozLab/edgehog

Opengraph URL: https://github.com/DessimozLab/edgehog

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:377fc10d-c8f5-901e-4e99-408d6cf5373a
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idC318:AB4C6:81B195:B1B346:69775787
html-safe-nonce8b62fd31ec23eca9d3c873f8d8ba7b9dd4fab869b0283f677c14e1aea1ae8ef7
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJDMzE4OkFCNEM2OjgxQjE5NTpCMUIzNDY6Njk3NzU3ODciLCJ2aXNpdG9yX2lkIjoiNTIyOTI3ODgwNjcxMDYzODQ3MSIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac8ed9bbcf26f87fa31c7cb47d54370b12e53f3f9ef4a2a3295764b2b714f02c94
hovercard-subject-tagrepository:626912016
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/DessimozLab/edgehog
twitter:imagehttps://opengraph.githubassets.com/86a1d3357ae1abc94821beee5b5be70529151807e260047fc7e43a0116e4e4b3/DessimozLab/edgehog
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/86a1d3357ae1abc94821beee5b5be70529151807e260047fc7e43a0116e4e4b3/DessimozLab/edgehog
og:image:altInfering ancestral synteny with hierarchical orthologous groups - DessimozLab/edgehog
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None3310064f35a62c06a4024ba37f41c06836f39376a095c2dfd2c4b693c34965be
turbo-cache-controlno-preview
go-importgithub.com/DessimozLab/edgehog git https://github.com/DessimozLab/edgehog.git
octolytics-dimension-user_id16049503
octolytics-dimension-user_loginDessimozLab
octolytics-dimension-repository_id626912016
octolytics-dimension-repository_nwoDessimozLab/edgehog
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id626912016
octolytics-dimension-repository_network_root_nwoDessimozLab/edgehog
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release67d5f8d1d53c3cc4f49fc3bb8029933c3dc219e6
ui-targetcanary-1
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/DessimozLab/edgehog#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FDessimozLab%2Fedgehog
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FDessimozLab%2Fedgehog
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=DessimozLab%2Fedgehog
Reloadhttps://patch-diff.githubusercontent.com/DessimozLab/edgehog
Reloadhttps://patch-diff.githubusercontent.com/DessimozLab/edgehog
Reloadhttps://patch-diff.githubusercontent.com/DessimozLab/edgehog
DessimozLab https://patch-diff.githubusercontent.com/DessimozLab
edgehoghttps://patch-diff.githubusercontent.com/DessimozLab/edgehog
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FDessimozLab%2Fedgehog
Fork 3 https://patch-diff.githubusercontent.com/login?return_to=%2FDessimozLab%2Fedgehog
Star 38 https://patch-diff.githubusercontent.com/login?return_to=%2FDessimozLab%2Fedgehog
MIT license https://patch-diff.githubusercontent.com/DessimozLab/edgehog/blob/main/LICENSE.txt
38 stars https://patch-diff.githubusercontent.com/DessimozLab/edgehog/stargazers
3 forks https://patch-diff.githubusercontent.com/DessimozLab/edgehog/forks
Branches https://patch-diff.githubusercontent.com/DessimozLab/edgehog/branches
Tags https://patch-diff.githubusercontent.com/DessimozLab/edgehog/tags
Activity https://patch-diff.githubusercontent.com/DessimozLab/edgehog/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FDessimozLab%2Fedgehog
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FDessimozLab%2Fedgehog
Code https://patch-diff.githubusercontent.com/DessimozLab/edgehog
Issues 1 https://patch-diff.githubusercontent.com/DessimozLab/edgehog/issues
Pull requests 5 https://patch-diff.githubusercontent.com/DessimozLab/edgehog/pulls
Actions https://patch-diff.githubusercontent.com/DessimozLab/edgehog/actions
Projects 0 https://patch-diff.githubusercontent.com/DessimozLab/edgehog/projects
Security 0 https://patch-diff.githubusercontent.com/DessimozLab/edgehog/security
Insights https://patch-diff.githubusercontent.com/DessimozLab/edgehog/pulse
Code https://patch-diff.githubusercontent.com/DessimozLab/edgehog
Issues https://patch-diff.githubusercontent.com/DessimozLab/edgehog/issues
Pull requests https://patch-diff.githubusercontent.com/DessimozLab/edgehog/pulls
Actions https://patch-diff.githubusercontent.com/DessimozLab/edgehog/actions
Projects https://patch-diff.githubusercontent.com/DessimozLab/edgehog/projects
Security https://patch-diff.githubusercontent.com/DessimozLab/edgehog/security
Insights https://patch-diff.githubusercontent.com/DessimozLab/edgehog/pulse
Brancheshttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/branches
Tagshttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/tags
https://patch-diff.githubusercontent.com/DessimozLab/edgehog/branches
https://patch-diff.githubusercontent.com/DessimozLab/edgehog/tags
99 Commitshttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/commits/main/
https://patch-diff.githubusercontent.com/DessimozLab/edgehog/commits/main/
.githubhttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/tree/main/.github
.githubhttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/tree/main/.github
edgehoghttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/tree/main/edgehog
edgehoghttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/tree/main/edgehog
test_datahttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/tree/main/test_data
test_datahttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/tree/main/test_data
utilshttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/tree/main/utils
utilshttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/tree/main/utils
Dockerfilehttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/blob/main/Dockerfile
Dockerfilehttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/blob/main/Dockerfile
LICENSE.txthttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/blob/main/LICENSE.txt
LICENSE.txthttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/blob/main/LICENSE.txt
README.mdhttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/blob/main/README.md
pyproject.tomlhttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/blob/main/pyproject.toml
pyproject.tomlhttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/blob/main/pyproject.toml
READMEhttps://patch-diff.githubusercontent.com/DessimozLab/edgehog
MIT licensehttps://patch-diff.githubusercontent.com/DessimozLab/edgehog
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#edgehog
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#contents
Overviewhttps://patch-diff.githubusercontent.com/DessimozLab/edgehog#overview
System Requirementshttps://patch-diff.githubusercontent.com/DessimozLab/edgehog#system-requirements
Installation Guidehttps://patch-diff.githubusercontent.com/DessimozLab/edgehog#installation
Demohttps://patch-diff.githubusercontent.com/DessimozLab/edgehog#demo
Resultshttps://patch-diff.githubusercontent.com/DessimozLab/edgehog#results
Licensehttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/blob/main/LICENSE.txt
Issueshttps://github.com/dessimozlab/edgehog/issues
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#overview
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#system-requirements
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#hardware-requirements
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#software-requirements
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#os-requirements
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#installing-python-on-ubuntu-2204
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#installation
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#from-pypi-using-pip
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#from-sources
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#for-conda-users
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#usage
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#input-data
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#species-tree
herehttps://omabrowser.org/All/speciestree.nwk
herehttps://data.gtdb.ecogenomic.org/releases/latest/
useful build-in functionshttp://etetoolkit.org/docs/latest/tutorial/tutorial_ncbitaxonomy.html
ete3 tutorialhttp://etetoolkit.org/docs/latest/tutorial/tutorial_trees.html#pruning-trees
this tutorialhttps://github.com/DessimozLab/f1000_PhylogeneticTree
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#hierarchicalgroupsorthoxml
OrthoDBhttps://www.orthodb.org/
EggNOGhttp://eggnog5.embl.de
HieranoiDBhttps://hieranoidb.sbc.su.se/
OMAhttps://omabrowser.org/oma/home/
OMA_standalonehttps://omabrowser.org/standalone/
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#demo
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#small-test-dataset
test-data specific READMEhttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/blob/main/test_data/README.md
Result sectionhttps://patch-diff.githubusercontent.com/DessimozLab/edgehog#results
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#large-dataset-complete-oma-database-with-thousands-of-genomes
https://omabrowser.org/oma/current/https://omabrowser.org/oma/current/
oma-hogs.orthoXML.gz filehttps://omabrowser.org/All/oma-hogs.orthoXML.gz
species treehttps://omabrowser.org/All/speciestree.nwk
OMA HDF5 databasehttps://omabrowser.org/All/OmaServer.h5
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#results
https://patch-diff.githubusercontent.com/DessimozLab/edgehog#dating-extant-adjacencies-with-timetree-data
http://www.timetree.org/http://www.timetree.org/
http://www.timetree.org/faqshttp://www.timetree.org/faqs
Readme https://patch-diff.githubusercontent.com/DessimozLab/edgehog#readme-ov-file
MIT license https://patch-diff.githubusercontent.com/DessimozLab/edgehog#MIT-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/DessimozLab/edgehog
Activityhttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/activity
Custom propertieshttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/custom-properties
38 starshttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/stargazers
6 watchinghttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/watchers
3 forkshttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FDessimozLab%2Fedgehog&report=DessimozLab+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/DessimozLab/edgehog/releases
9 tags https://patch-diff.githubusercontent.com/DessimozLab/edgehog/tags
Packages 0https://patch-diff.githubusercontent.com/orgs/DessimozLab/packages?repo_name=edgehog
Please reload this pagehttps://patch-diff.githubusercontent.com/DessimozLab/edgehog
Contributors 5https://patch-diff.githubusercontent.com/DessimozLab/edgehog/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/DessimozLab/edgehog
Python 99.2% https://patch-diff.githubusercontent.com/DessimozLab/edgehog/search?l=python
Dockerfile 0.8% https://patch-diff.githubusercontent.com/DessimozLab/edgehog/search?l=dockerfile
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.