René's URL Explorer Experiment


Title: GitHub - DessimozLab/OMArk

Open Graph Title: GitHub - DessimozLab/OMArk

X Title: GitHub - DessimozLab/OMArk

Description: Contribute to DessimozLab/OMArk development by creating an account on GitHub.

Open Graph Description: Contribute to DessimozLab/OMArk development by creating an account on GitHub.

X Description: Contribute to DessimozLab/OMArk development by creating an account on GitHub.

Opengraph URL: https://github.com/DessimozLab/OMArk

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:b32e9a65-95e1-5bff-0011-715d59aed5d3
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id992E:213766:16CDF83:1E8293F:69780F12
html-safe-nonce4bfd5cf963e30350b71e7a4975133af4dfc2765595097549321acfcf201ddc53
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5OTJFOjIxMzc2NjoxNkNERjgzOjFFODI5M0Y6Njk3ODBGMTIiLCJ2aXNpdG9yX2lkIjoiODM1OTgyNTI0ODM3MDU2MDc4NiIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmacd78328886fa7a7d311f73065e16dcb4f20e2658a0a3ac8940e43f9f8b7b973c0
hovercard-subject-tagrepository:410796595
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/DessimozLab/OMArk
twitter:imagehttps://opengraph.githubassets.com/2e119846911d2788002768c76301e17b43e57e57711df937c47de440376c73a1/DessimozLab/OMArk
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/2e119846911d2788002768c76301e17b43e57e57711df937c47de440376c73a1/DessimozLab/OMArk
og:image:altContribute to DessimozLab/OMArk development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Nonee71ed39771d00f42ce2fc9320895c8c608c164191e118eae487fc3bd0af6886d
turbo-cache-controlno-preview
go-importgithub.com/DessimozLab/OMArk git https://github.com/DessimozLab/OMArk.git
octolytics-dimension-user_id16049503
octolytics-dimension-user_loginDessimozLab
octolytics-dimension-repository_id410796595
octolytics-dimension-repository_nwoDessimozLab/OMArk
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id410796595
octolytics-dimension-repository_network_root_nwoDessimozLab/OMArk
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release371710c20276ca72b3e82b0f41ece556a0038443
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/DessimozLab/OMArk#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FDessimozLab%2FOMArk
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FDessimozLab%2FOMArk
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=DessimozLab%2FOMArk
Reloadhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk
Reloadhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk
Reloadhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk
DessimozLab https://patch-diff.githubusercontent.com/DessimozLab
OMArkhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FDessimozLab%2FOMArk
Fork 7 https://patch-diff.githubusercontent.com/login?return_to=%2FDessimozLab%2FOMArk
Star 89 https://patch-diff.githubusercontent.com/login?return_to=%2FDessimozLab%2FOMArk
LGPL-3.0 LICENSE https://patch-diff.githubusercontent.com/DessimozLab/OMArk/blob/main/LICENSE
Unknown COPYING https://patch-diff.githubusercontent.com/DessimozLab/OMArk/blob/main/COPYING
LGPL-3.0 COPYING.LESSER https://patch-diff.githubusercontent.com/DessimozLab/OMArk/blob/main/COPYING.LESSER
89 stars https://patch-diff.githubusercontent.com/DessimozLab/OMArk/stargazers
7 forks https://patch-diff.githubusercontent.com/DessimozLab/OMArk/forks
Branches https://patch-diff.githubusercontent.com/DessimozLab/OMArk/branches
Tags https://patch-diff.githubusercontent.com/DessimozLab/OMArk/tags
Activity https://patch-diff.githubusercontent.com/DessimozLab/OMArk/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FDessimozLab%2FOMArk
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FDessimozLab%2FOMArk
Code https://patch-diff.githubusercontent.com/DessimozLab/OMArk
Issues 10 https://patch-diff.githubusercontent.com/DessimozLab/OMArk/issues
Pull requests 0 https://patch-diff.githubusercontent.com/DessimozLab/OMArk/pulls
Actions https://patch-diff.githubusercontent.com/DessimozLab/OMArk/actions
Projects 0 https://patch-diff.githubusercontent.com/DessimozLab/OMArk/projects
Security 0 https://patch-diff.githubusercontent.com/DessimozLab/OMArk/security
Insights https://patch-diff.githubusercontent.com/DessimozLab/OMArk/pulse
Code https://patch-diff.githubusercontent.com/DessimozLab/OMArk
Issues https://patch-diff.githubusercontent.com/DessimozLab/OMArk/issues
Pull requests https://patch-diff.githubusercontent.com/DessimozLab/OMArk/pulls
Actions https://patch-diff.githubusercontent.com/DessimozLab/OMArk/actions
Projects https://patch-diff.githubusercontent.com/DessimozLab/OMArk/projects
Security https://patch-diff.githubusercontent.com/DessimozLab/OMArk/security
Insights https://patch-diff.githubusercontent.com/DessimozLab/OMArk/pulse
Brancheshttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/branches
Tagshttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/tags
https://patch-diff.githubusercontent.com/DessimozLab/OMArk/branches
https://patch-diff.githubusercontent.com/DessimozLab/OMArk/tags
127 Commitshttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/commits/main/
https://patch-diff.githubusercontent.com/DessimozLab/OMArk/commits/main/
.githubhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/tree/main/.github
.githubhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/tree/main/.github
example_datahttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/tree/main/example_data
example_datahttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/tree/main/example_data
src/omarkhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/tree/main/src/omark
src/omarkhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/tree/main/src/omark
utilshttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/tree/main/utils
utilshttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/tree/main/utils
.gitignorehttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/blob/main/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/blob/main/.gitignore
COPYINGhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/blob/main/COPYING
COPYINGhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/blob/main/COPYING
COPYING.LESSERhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/blob/main/COPYING.LESSER
COPYING.LESSERhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/blob/main/COPYING.LESSER
LICENSEhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/blob/main/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/blob/main/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/blob/main/README.md
pyproject.tomlhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/blob/main/pyproject.toml
pyproject.tomlhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/blob/main/pyproject.toml
READMEhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk
LGPL-3.0 licensehttps://patch-diff.githubusercontent.com/DessimozLab/OMArk
Licensehttps://patch-diff.githubusercontent.com/DessimozLab/OMArk
LGPL-3.0 licensehttps://patch-diff.githubusercontent.com/DessimozLab/OMArk
https://patch-diff.githubusercontent.com/DessimozLab/OMArk#omark
https://doi.org/10.1038/s41587-024-02147-whttps://doi.org/10.1038/s41587-024-02147-w
https://patch-diff.githubusercontent.com/DessimozLab/OMArk#installation
https://patch-diff.githubusercontent.com/DessimozLab/OMArk#omamer-database
"Current release"https://omabrowser.org/oma/current/
LUCA.h5https://omabrowser.org/All/LUCA.h5
https://doi.org/10.5281/zenodo.10034236
preprinthttps://www.biorxiv.org/content/10.1101/2022.11.25.517970v1
https://patch-diff.githubusercontent.com/DessimozLab/OMArk#usage
https://patch-diff.githubusercontent.com/DessimozLab/OMArk#arguments
-f --filehttps://patch-diff.githubusercontent.com/DessimozLab/OMArk#markdown-header--file
-c --output_cHOGshttps://patch-diff.githubusercontent.com/DessimozLab/OMArk#markdown-header--output_cHOGs
-d --dbhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk#markdown-header--database
-o --outputFolderhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk#markdown-header--outputFolder
-t --taxidhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk#markdown-header--taxid
-of --og_fastahttps://patch-diff.githubusercontent.com/DessimozLab/OMArk#markdown-header--og_fasta
-i, --isoform_filehttps://patch-diff.githubusercontent.com/DessimozLab/OMArk#markdown-header--isoform_file
Splicing isoformshttps://patch-diff.githubusercontent.com/DessimozLab/OMArk#splicing-isoforms
-r --taxonomic-rankhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk#markdown-header--taxonomic-rank
-e --ete_ncbi_dbhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk#markdown-header--ete_ncbi_db
-v --verbosehttps://patch-diff.githubusercontent.com/DessimozLab/OMArk#markdown-header--verbose
-n --min_n_specieshttps://patch-diff.githubusercontent.com/DessimozLab/OMArk#markdown-header--verbose
https://patch-diff.githubusercontent.com/DessimozLab/OMArk#input-data
Examplehttps://patch-diff.githubusercontent.com/DessimozLab/OMArk#example
https://patch-diff.githubusercontent.com/DessimozLab/OMArk#splicing-isoforms
https://patch-diff.githubusercontent.com/DessimozLab/OMArk#output
https://patch-diff.githubusercontent.com/DessimozLab/OMArk#example
Githubhttps://github.com/DessimozLab/omamer
https://patch-diff.githubusercontent.com/DessimozLab/OMArk#visualising-multiple-omark-results
https://patch-diff.githubusercontent.com/DessimozLab/OMArk#webserver
https://omark.omabrowser.org/home/https://omark.omabrowser.org/home/
Readme https://patch-diff.githubusercontent.com/DessimozLab/OMArk#readme-ov-file
LGPL-3.0 LICENSE https://patch-diff.githubusercontent.com/DessimozLab/OMArk/blob/main/LICENSE
Unknown COPYING https://patch-diff.githubusercontent.com/DessimozLab/OMArk/blob/main/COPYING
LGPL-3.0 COPYING.LESSER https://patch-diff.githubusercontent.com/DessimozLab/OMArk/blob/main/COPYING.LESSER
Please reload this pagehttps://patch-diff.githubusercontent.com/DessimozLab/OMArk
Activityhttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/activity
Custom propertieshttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/custom-properties
89 starshttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/stargazers
5 watchinghttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/watchers
7 forkshttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FDessimozLab%2FOMArk&report=DessimozLab+%28user%29
Releases 10https://patch-diff.githubusercontent.com/DessimozLab/OMArk/releases
v0.4.1 Latest Dec 3, 2025 https://patch-diff.githubusercontent.com/DessimozLab/OMArk/releases/tag/v0.4.1
+ 9 releaseshttps://patch-diff.githubusercontent.com/DessimozLab/OMArk/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/DessimozLab/packages?repo_name=OMArk
Please reload this pagehttps://patch-diff.githubusercontent.com/DessimozLab/OMArk
Contributors 6https://patch-diff.githubusercontent.com/DessimozLab/OMArk/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/DessimozLab/OMArk
Python 81.9% https://patch-diff.githubusercontent.com/DessimozLab/OMArk/search?l=python
Jupyter Notebook 18.1% https://patch-diff.githubusercontent.com/DessimozLab/OMArk/search?l=jupyter-notebook
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.