René's URL Explorer Experiment


Title: GitHub - DeepRank/pdbprep: preprocess PDB files for deeprankcore

Open Graph Title: GitHub - DeepRank/pdbprep: preprocess PDB files for deeprankcore

X Title: GitHub - DeepRank/pdbprep: preprocess PDB files for deeprankcore

Description: preprocess PDB files for deeprankcore. Contribute to DeepRank/pdbprep development by creating an account on GitHub.

Open Graph Description: preprocess PDB files for deeprankcore. Contribute to DeepRank/pdbprep development by creating an account on GitHub.

X Description: preprocess PDB files for deeprankcore. Contribute to DeepRank/pdbprep development by creating an account on GitHub.

Opengraph URL: https://github.com/DeepRank/pdbprep

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:ca5018e8-31cc-8ac1-7192-e471acf67ef8
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id9D7E:1793A:41BAC4:5576AD:698D5E9F
html-safe-noncee00129f734db636cbf3bc741228c88b73e227b3e2741ec8bc6e15440d94779f7
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5RDdFOjE3OTNBOjQxQkFDNDo1NTc2QUQ6Njk4RDVFOUYiLCJ2aXNpdG9yX2lkIjoiODc0MjkyMzkzMTYwNDU3Mzg1NSIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac39ec0a77b37c1cc0a73be17c30b48d3545a3031f91745dadcecf35f748af9475
hovercard-subject-tagrepository:641345788
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/DeepRank/pdbprep
twitter:imagehttps://opengraph.githubassets.com/09c81817f417b9211947afb57391ce2ceb5ae4e4ef606c80dfd4c7a9c741b1c0/DeepRank/pdbprep
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/09c81817f417b9211947afb57391ce2ceb5ae4e4ef606c80dfd4c7a9c741b1c0/DeepRank/pdbprep
og:image:altpreprocess PDB files for deeprankcore. Contribute to DeepRank/pdbprep development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Nonec0818105fa276287e9369cfdefa0a0fa7953719791ceff9b94d69623c0a4fe8a
turbo-cache-controlno-preview
go-importgithub.com/DeepRank/pdbprep git https://github.com/DeepRank/pdbprep.git
octolytics-dimension-user_id31408512
octolytics-dimension-user_loginDeepRank
octolytics-dimension-repository_id641345788
octolytics-dimension-repository_nwoDeepRank/pdbprep
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id641345788
octolytics-dimension-repository_network_root_nwoDeepRank/pdbprep
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releasea95a17cc440c14d4fcddc0641bc1136fa8d908f0
ui-targetcanary-2
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/DeepRank/pdbprep#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FDeepRank%2Fpdbprep
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FDeepRank%2Fpdbprep
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=DeepRank%2Fpdbprep
Reloadhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep
Reloadhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep
Reloadhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep
DeepRank https://patch-diff.githubusercontent.com/DeepRank
pdbprephttps://patch-diff.githubusercontent.com/DeepRank/pdbprep
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FDeepRank%2Fpdbprep
Fork 1 https://patch-diff.githubusercontent.com/login?return_to=%2FDeepRank%2Fpdbprep
Star 4 https://patch-diff.githubusercontent.com/login?return_to=%2FDeepRank%2Fpdbprep
Apache-2.0 license https://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/LICENSE
4 stars https://patch-diff.githubusercontent.com/DeepRank/pdbprep/stargazers
1 fork https://patch-diff.githubusercontent.com/DeepRank/pdbprep/forks
Branches https://patch-diff.githubusercontent.com/DeepRank/pdbprep/branches
Tags https://patch-diff.githubusercontent.com/DeepRank/pdbprep/tags
Activity https://patch-diff.githubusercontent.com/DeepRank/pdbprep/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FDeepRank%2Fpdbprep
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FDeepRank%2Fpdbprep
Code https://patch-diff.githubusercontent.com/DeepRank/pdbprep
Issues 4 https://patch-diff.githubusercontent.com/DeepRank/pdbprep/issues
Pull requests 1 https://patch-diff.githubusercontent.com/DeepRank/pdbprep/pulls
Actions https://patch-diff.githubusercontent.com/DeepRank/pdbprep/actions
Projects 0 https://patch-diff.githubusercontent.com/DeepRank/pdbprep/projects
Security 0 https://patch-diff.githubusercontent.com/DeepRank/pdbprep/security
Insights https://patch-diff.githubusercontent.com/DeepRank/pdbprep/pulse
Code https://patch-diff.githubusercontent.com/DeepRank/pdbprep
Issues https://patch-diff.githubusercontent.com/DeepRank/pdbprep/issues
Pull requests https://patch-diff.githubusercontent.com/DeepRank/pdbprep/pulls
Actions https://patch-diff.githubusercontent.com/DeepRank/pdbprep/actions
Projects https://patch-diff.githubusercontent.com/DeepRank/pdbprep/projects
Security https://patch-diff.githubusercontent.com/DeepRank/pdbprep/security
Insights https://patch-diff.githubusercontent.com/DeepRank/pdbprep/pulse
Brancheshttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/branches
Tagshttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/tags
https://patch-diff.githubusercontent.com/DeepRank/pdbprep/branches
https://patch-diff.githubusercontent.com/DeepRank/pdbprep/tags
42 Commitshttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/commits/main/
https://patch-diff.githubusercontent.com/DeepRank/pdbprep/commits/main/
.gitignorehttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/.gitignore
LICENSEhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/README.md
add_ff_hydrogens.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/add_ff_hydrogens.py
add_ff_hydrogens.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/add_ff_hydrogens.py
detect_protonation.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/detect_protonation.py
detect_protonation.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/detect_protonation.py
pdb_delresname.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/pdb_delresname.py
pdb_delresname.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/pdb_delresname.py
pdb_fixinsert.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/pdb_fixinsert.py
pdb_fixinsert.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/pdb_fixinsert.py
pdb_keepcoord.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/pdb_keepcoord.py
pdb_keepcoord.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/pdb_keepcoord.py
pdb_reatom.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/pdb_reatom.py
pdb_reatom.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/pdb_reatom.py
pdb_reres.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/pdb_reres.py
pdb_reres.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/pdb_reres.py
pdb_rplresname.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/pdb_rplresname.py
pdb_rplresname.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/pdb_rplresname.py
pdb_selaltloc.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/pdb_selaltloc.py
pdb_selaltloc.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/pdb_selaltloc.py
pdb_sort.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/pdb_sort.py
pdb_sort.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/pdb_sort.py
pdb_tidy.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/pdb_tidy.py
pdb_tidy.pyhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/pdb_tidy.py
run_pdbprep.shhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/run_pdbprep.sh
run_pdbprep.shhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/run_pdbprep.sh
setup.shhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/setup.sh
setup.shhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/blob/main/setup.sh
READMEhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep
Apache-2.0 licensehttps://patch-diff.githubusercontent.com/DeepRank/pdbprep
https://patch-diff.githubusercontent.com/DeepRank/pdbprep#performed-tasks
pdb-tooshttps://www.bonvinlab.org/pdb-tools/
PRAShttps://pubs.acs.org/doi/10.1021/acs.jcim.2c00571
pdb2pqrhttps://pdb2pqr.readthedocs.io/en/latest/
https://patch-diff.githubusercontent.com/DeepRank/pdbprep#how-to-install
https://patch-diff.githubusercontent.com/DeepRank/pdbprep#clone-this-repository
https://patch-diff.githubusercontent.com/DeepRank/pdbprep#install-dependencies
Anacondahttps://www.anaconda.com/download
https://github.com/osita-sunday-nnyigide/Pras_Serverhttps://github.com/osita-sunday-nnyigide/Pras_Server
https://pubs.acs.org/doi/10.1021/acs.jcim.2c00571https://pubs.acs.org/doi/10.1021/acs.jcim.2c00571
https://patch-diff.githubusercontent.com/DeepRank/pdbprep#give-execution-permission-to-files
http://www.bonvinlab.org/pdb-tools/http://www.bonvinlab.org/pdb-tools/
https://patch-diff.githubusercontent.com/DeepRank/pdbprep#how-to-run
https://patch-diff.githubusercontent.com/DeepRank/pdbprep#source-the-setupsh-file
https://patch-diff.githubusercontent.com/DeepRank/pdbprep#prepare-a-list-of-the-target-pdbs
https://patch-diff.githubusercontent.com/DeepRank/pdbprep#run-the-pipeline---prepare-the-pdbs
Method 1 of these instructionshttps://devicetests.com/fix-glibcxx-3-4-30-not-found-error-in-conda-environment
https://patch-diff.githubusercontent.com/DeepRank/pdbprep#what-to-expect
https://patch-diff.githubusercontent.com/DeepRank/pdbprep#troubleshooting
https://patch-diff.githubusercontent.com/DeepRank/pdbprep#cant-find-python
https://patch-diff.githubusercontent.com/DeepRank/pdbprep#need-help
issuehttps://github.com/DeepRank/pdbprep/issues
https://patch-diff.githubusercontent.com/DeepRank/pdbprep#citing
pdb-toolshttps://f1000research.com/articles/7-1961
Prashttps://pubs.acs.org/doi/10.1021/acs.jcim.2c00571
pbd2pqrhttps://pdb2pqr.readthedocs.io/en/latest/supporting.html#citing-our-software
OpenMMhttps://openmm.org/
Readme https://patch-diff.githubusercontent.com/DeepRank/pdbprep#readme-ov-file
Apache-2.0 license https://patch-diff.githubusercontent.com/DeepRank/pdbprep#Apache-2.0-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/DeepRank/pdbprep
Activityhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/activity
Custom propertieshttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/custom-properties
4 starshttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/stargazers
6 watchinghttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/watchers
1 forkhttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FDeepRank%2Fpdbprep&report=DeepRank+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/DeepRank/pdbprep/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/DeepRank/packages?repo_name=pdbprep
Contributors 2https://patch-diff.githubusercontent.com/DeepRank/pdbprep/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/DeepRank/pdbprep
Python 90.2% https://patch-diff.githubusercontent.com/DeepRank/pdbprep/search?l=python
Shell 9.8% https://patch-diff.githubusercontent.com/DeepRank/pdbprep/search?l=shell
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.