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Open Graph Title: DeepGraphLearning/GearNet

X Title: DeepGraphLearning/GearNet

Description: GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125) - DeepGraphLearning/GearNet

Open Graph Description: GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125) - DeepGraphLearning/GearNet

X Description: GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125) - DeepGraphLearning/GearNet

Opengraph URL: https://github.com/DeepGraphLearning/GearNet

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Enviroment set up problemhttps://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues/71
xuezhixie-cellhttps://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues?q=is%3Aissue%20state%3Aopen%20author%3Axuezhixie-cell
How to pass the protein pdb file to the released model weight: (mc_gearnet_edge.pth)https://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues/69
Tizzzzyhttps://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues?q=is%3Aissue%20state%3Aopen%20author%3ATizzzzy
How to check the representation of a 3D structure datahttps://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues/68
Tizzzzyhttps://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues?q=is%3Aissue%20state%3Aopen%20author%3ATizzzzy
Working with batches of proteins with different sizeshttps://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues/66
mpedraza98https://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues?q=is%3Aissue%20state%3Aopen%20author%3Ampedraza98
Why is the Batch Size for Downstream Tasks Set to 2? It Seems Quite Slowhttps://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues/65
minjiechenghttps://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues?q=is%3Aissue%20state%3Aopen%20author%3Aminjiecheng
About data_setting from species_start: 0 to species_end: 22 of alphafolddb_v2https://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues/64
minjiechenghttps://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues?q=is%3Aissue%20state%3Aopen%20author%3Aminjiecheng
how Fmax and AUPRC are calculated?https://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues/63
Qzhangyxhttps://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues?q=is%3Aissue%20state%3Aopen%20author%3AQzhangyx
Problems in using "fold_mc_gearnet_edge_ieconv.pth"https://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues/62
haniuluhttps://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues?q=is%3Aissue%20state%3Aopen%20author%3Ahaniulu
Problems in using FC datasethttps://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues/61
Yangqy-16https://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues?q=is%3Aissue%20state%3Aopen%20author%3AYangqy-16
Seeking help for datasethttps://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues/60
zsc2003https://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues?q=is%3Aissue%20state%3Aopen%20author%3Azsc2003
RuntimeError: shape '[31, 147]' is invalid for input of size 651 in extracting embbeding from pdb fileshttps://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues/59
blazexpirehttps://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues?q=is%3Aissue%20state%3Aopen%20author%3Ablazexpire
Extract the structure embeddingshttps://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues/58
Jerry888Chenhttps://patch-diff.githubusercontent.com/DeepGraphLearning/GearNet/issues?q=is%3Aissue%20state%3Aopen%20author%3AJerry888Chen
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