René's URL Explorer Experiment


Title: GitHub - CogStack/MedCAT: Medical Concept Annotation Tool

Open Graph Title: GitHub - CogStack/MedCAT: Medical Concept Annotation Tool

X Title: GitHub - CogStack/MedCAT: Medical Concept Annotation Tool

Description: Medical Concept Annotation Tool. Contribute to CogStack/MedCAT development by creating an account on GitHub.

Open Graph Description: Medical Concept Annotation Tool. Contribute to CogStack/MedCAT development by creating an account on GitHub.

X Description: Medical Concept Annotation Tool. Contribute to CogStack/MedCAT development by creating an account on GitHub.

Opengraph URL: https://github.com/CogStack/MedCAT

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:d760d58e-6e93-5d8f-c3ea-4a60939046fd
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id988C:1EFC2B:E9B1B3:12E0B06:6990C333
html-safe-nonce219e247fc0cb541d1ded15a312f10f4f31401a41ffa1ef8f516c8f5cf689fec4
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5ODhDOjFFRkMyQjpFOUIxQjM6MTJFMEIwNjo2OTkwQzMzMyIsInZpc2l0b3JfaWQiOiI1NzI2NTU2Nzg2MDMyNDI3ODI3IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmacc80e333e0a632807f538d3c5582b1c62a18e0bb59bb1ebbc220c7b6aeabdc35a
hovercard-subject-tagrepository:176126178
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/CogStack/MedCAT
twitter:imagehttps://opengraph.githubassets.com/80716aa284845aea44a792eeca6379a359608dc26359290c4fc4d8aa70576921/CogStack/MedCAT
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/80716aa284845aea44a792eeca6379a359608dc26359290c4fc4d8aa70576921/CogStack/MedCAT
og:image:altMedical Concept Annotation Tool. Contribute to CogStack/MedCAT development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None42c603b9d642c4a9065a51770f75e5e27132fef0e858607f5c9cb7e422831a7b
turbo-cache-controlno-preview
go-importgithub.com/CogStack/MedCAT git https://github.com/CogStack/MedCAT.git
octolytics-dimension-user_id28688163
octolytics-dimension-user_loginCogStack
octolytics-dimension-repository_id176126178
octolytics-dimension-repository_nwoCogStack/MedCAT
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id176126178
octolytics-dimension-repository_network_root_nwoCogStack/MedCAT
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release848bc6032dcc93a9a7301dcc3f379a72ba13b96e
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/CogStack/MedCAT#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FCogStack%2FMedCAT
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FCogStack%2FMedCAT
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=CogStack%2FMedCAT
Reloadhttps://patch-diff.githubusercontent.com/CogStack/MedCAT
Reloadhttps://patch-diff.githubusercontent.com/CogStack/MedCAT
Reloadhttps://patch-diff.githubusercontent.com/CogStack/MedCAT
CogStack https://patch-diff.githubusercontent.com/CogStack
MedCAThttps://patch-diff.githubusercontent.com/CogStack/MedCAT
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FCogStack%2FMedCAT
Fork 117 https://patch-diff.githubusercontent.com/login?return_to=%2FCogStack%2FMedCAT
Star 523 https://patch-diff.githubusercontent.com/login?return_to=%2FCogStack%2FMedCAT
Apache-2.0 license https://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/LICENSE
523 stars https://patch-diff.githubusercontent.com/CogStack/MedCAT/stargazers
117 forks https://patch-diff.githubusercontent.com/CogStack/MedCAT/forks
Branches https://patch-diff.githubusercontent.com/CogStack/MedCAT/branches
Tags https://patch-diff.githubusercontent.com/CogStack/MedCAT/tags
Activity https://patch-diff.githubusercontent.com/CogStack/MedCAT/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FCogStack%2FMedCAT
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FCogStack%2FMedCAT
Code https://patch-diff.githubusercontent.com/CogStack/MedCAT
Issues 0 https://patch-diff.githubusercontent.com/CogStack/MedCAT/issues
Pull requests 1 https://patch-diff.githubusercontent.com/CogStack/MedCAT/pulls
Actions https://patch-diff.githubusercontent.com/CogStack/MedCAT/actions
Projects 0 https://patch-diff.githubusercontent.com/CogStack/MedCAT/projects
Security 0 https://patch-diff.githubusercontent.com/CogStack/MedCAT/security
Insights https://patch-diff.githubusercontent.com/CogStack/MedCAT/pulse
Code https://patch-diff.githubusercontent.com/CogStack/MedCAT
Issues https://patch-diff.githubusercontent.com/CogStack/MedCAT/issues
Pull requests https://patch-diff.githubusercontent.com/CogStack/MedCAT/pulls
Actions https://patch-diff.githubusercontent.com/CogStack/MedCAT/actions
Projects https://patch-diff.githubusercontent.com/CogStack/MedCAT/projects
Security https://patch-diff.githubusercontent.com/CogStack/MedCAT/security
Insights https://patch-diff.githubusercontent.com/CogStack/MedCAT/pulse
Brancheshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/branches
Tagshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tags
https://patch-diff.githubusercontent.com/CogStack/MedCAT/branches
https://patch-diff.githubusercontent.com/CogStack/MedCAT/tags
1,506 Commitshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/commits/main/
https://patch-diff.githubusercontent.com/CogStack/MedCAT/commits/main/
.github/workflowshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/.github/workflows
.github/workflowshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/.github/workflows
configshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/configs
configshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/configs
docshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/docs
docshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/docs
exampleshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/examples
exampleshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/examples
medcathttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/medcat
medcathttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/medcat
mediahttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/media
mediahttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/media
modelshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/models
modelshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/models
notebookshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/notebooks
notebookshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/notebooks
testshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/tests
testshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/tests
tutorialhttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/tutorial
tutorialhttps://patch-diff.githubusercontent.com/CogStack/MedCAT/tree/main/tutorial
.dockerignorehttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/.dockerignore
.dockerignorehttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/.dockerignore
.flake8https://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/.flake8
.flake8https://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/.flake8
.gitignorehttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/.gitignore
.readthedocs.yamlhttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/.readthedocs.yaml
.readthedocs.yamlhttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/.readthedocs.yaml
CODE_OF_CONDUCT.mdhttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/CODE_OF_CONDUCT.md
CODE_OF_CONDUCT.mdhttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/CODE_OF_CONDUCT.md
CONTRIBUTING.mdhttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/CONTRIBUTING.md
CONTRIBUTING.mdhttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/CONTRIBUTING.md
LICENSEhttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/README.md
install_requires.txthttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/install_requires.txt
install_requires.txthttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/install_requires.txt
mypy.inihttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/mypy.ini
mypy.inihttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/mypy.ini
pyproject.tomlhttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/pyproject.toml
pyproject.tomlhttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/pyproject.toml
requirements-dev.txthttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/requirements-dev.txt
requirements-dev.txthttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/requirements-dev.txt
requirements.txthttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/requirements.txt
requirements.txthttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/requirements.txt
setup.pyhttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/setup.py
setup.pyhttps://patch-diff.githubusercontent.com/CogStack/MedCAT/blob/main/setup.py
READMEhttps://patch-diff.githubusercontent.com/CogStack/MedCAT
Code of conducthttps://patch-diff.githubusercontent.com/CogStack/MedCAT
Contributinghttps://patch-diff.githubusercontent.com/CogStack/MedCAT
Apache-2.0 licensehttps://patch-diff.githubusercontent.com/CogStack/MedCAT
Securityhttps://patch-diff.githubusercontent.com/CogStack/MedCAT
https://patch-diff.githubusercontent.com/CogStack/MedCAT#️-this-project-has-moved-repository
https://github.com/CogStack/cogstack-nlp
https://github.com/CogStack/cogstack-nlphttps://github.com/CogStack/cogstack-nlp
https://github.com/CogStack/cogstack-nlp
https://raw.githubusercontent.com/CogStack/MedCAT/main/media/cat-logo.png
https://patch-diff.githubusercontent.com/CogStack/MedCAT#medical---oncept-annotation-tool
MedCAT v2https://github.com/CogStack/MedCAT2
https://github.com/CogStack/MedCAT/actions/workflows/main.yml?query=branch%3Amain
https://medcat.readthedocs.io/en/latest/?badge=latest
https://github.com/CogStack/MedCAT/releases/latest
https://pypi.org/project/medcat/
arXivhttps://arxiv.org/abs/2010.01165
herehttps://medcat.readthedocs.io/en/latest/
discoursehttps://discourse.cogstack.org/
https://patch-diff.githubusercontent.com/CogStack/MedCAT#available-models
UMLS entities with Dutch nameshttps://github.com/umcu/dutch-umls
repositoryhttps://github.com/umcu/negation-detection/
paperhttps://doi.org/10.48550/arxiv.2209.00470
follow this linkhttps://uts.nlm.nih.gov/uts/login?service=https://medcat.sites.er.kcl.ac.uk/auth-callback
this link for API key based downloadhttps://medcat.sites.er.kcl.ac.uk/auth-callback-api
https://patch-diff.githubusercontent.com/CogStack/MedCAT#news
Negation detection in Dutch clinical texts: an evaluation of rule-based and machine learning methodshttps://doi.org/10.1186/s12859-022-05130-x
Foresight -- Deep Generative Modelling of Patient Timelines using Electronic Health Recordshttps://arxiv.org/abs/2212.08072
A New Public Corpus for Clinical Section Identification: MedSecId.https://aclanthology.org/2022.coling-1.326.pdf
Elastic License 2.0https://github.com/CogStack/MedCAT/pull/271/commits/c9f4e86116ec751a97c618c97dadaa23e1feb6bc
here.https://www.elastic.co/licensing/elastic-license
downloadhttps://uts.nlm.nih.gov/uts/login?service=https://medcat.sites.er.kcl.ac.uk/auth-callback
API key based downloadhttps://medcat.sites.er.kcl.ac.uk/auth-callback-api
Exploring Electronic Health Records with MedCAT and Neo4jhttps://towardsdatascience.com/exploring-electronic-health-records-with-medcat-and-neo4j-f376c03d8eef
Integrating 🤗 Transformers with MedCAT for biomedical NER+Lhttps://towardsdatascience.com/integrating-transformers-with-medcat-for-biomedical-ner-l-8869c76762a
What’s in a Summary? Laying the Groundwork for Advances in Hospital-Course Summarizationhttps://www.aclweb.org/anthology/2021.naacl-main.382.pdf
more...https://github.com/CogStack/MedCAT/blob/main/media/news.md
https://patch-diff.githubusercontent.com/CogStack/MedCAT#installation
https://patch-diff.githubusercontent.com/CogStack/MedCAT#demo
MedCAThttps://medcat.sites.er.kcl.ac.uk
https://patch-diff.githubusercontent.com/CogStack/MedCAT#tutorials
MedCAT Tutorialshttps://github.com/CogStack/MedCATtutorials
Towards Data Sciencehttps://towardsdatascience.com/medcat-introduction-analyzing-electronic-health-records-e1c420afa13a
https://patch-diff.githubusercontent.com/CogStack/MedCAT#logging
MedCAT Tutorialshttps://github.com/CogStack/MedCATtutorials
https://patch-diff.githubusercontent.com/CogStack/MedCAT#acknowledgements
MedMentionshttps://github.com/chanzuckerberg/MedMentions
Wiktionaryhttps://en.wiktionary.org/wiki/Wiktionary:Main_Page
https://patch-diff.githubusercontent.com/CogStack/MedCAT#powered-by
spaCyhttps://spacy.io/
Hugging Facehttps://huggingface.co/
https://patch-diff.githubusercontent.com/CogStack/MedCAT#citation
nlp https://patch-diff.githubusercontent.com/topics/nlp
natural-language-processing https://patch-diff.githubusercontent.com/topics/natural-language-processing
information-extraction https://patch-diff.githubusercontent.com/topics/information-extraction
healthcare https://patch-diff.githubusercontent.com/topics/healthcare
learn https://patch-diff.githubusercontent.com/topics/learn
snomed https://patch-diff.githubusercontent.com/topics/snomed
ner https://patch-diff.githubusercontent.com/topics/ner
collaborate https://patch-diff.githubusercontent.com/topics/collaborate
umls https://patch-diff.githubusercontent.com/topics/umls
electronic-health-records https://patch-diff.githubusercontent.com/topics/electronic-health-records
covid-19 https://patch-diff.githubusercontent.com/topics/covid-19
Readme https://patch-diff.githubusercontent.com/CogStack/MedCAT#readme-ov-file
Apache-2.0 license https://patch-diff.githubusercontent.com/CogStack/MedCAT#Apache-2.0-1-ov-file
Code of conduct https://patch-diff.githubusercontent.com/CogStack/MedCAT#coc-ov-file
Contributing https://patch-diff.githubusercontent.com/CogStack/MedCAT#contributing-ov-file
Security policy https://patch-diff.githubusercontent.com/CogStack/MedCAT#security-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/CogStack/MedCAT
Activityhttps://patch-diff.githubusercontent.com/CogStack/MedCAT/activity
Custom propertieshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/custom-properties
523 starshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/stargazers
18 watchinghttps://patch-diff.githubusercontent.com/CogStack/MedCAT/watchers
117 forkshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FCogStack%2FMedCAT&report=CogStack+%28user%29
Releases 50https://patch-diff.githubusercontent.com/CogStack/MedCAT/releases
v1.16.0 Latest Apr 25, 2025 https://patch-diff.githubusercontent.com/CogStack/MedCAT/releases/tag/v1.16.0
+ 49 releaseshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/CogStack/packages?repo_name=MedCAT
Please reload this pagehttps://patch-diff.githubusercontent.com/CogStack/MedCAT
Contributors 27https://patch-diff.githubusercontent.com/CogStack/MedCAT/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/CogStack/MedCAT
+ 13 contributorshttps://patch-diff.githubusercontent.com/CogStack/MedCAT/graphs/contributors
Python 95.4% https://patch-diff.githubusercontent.com/CogStack/MedCAT/search?l=python
Jupyter Notebook 4.4% https://patch-diff.githubusercontent.com/CogStack/MedCAT/search?l=jupyter-notebook
Shell 0.2% https://patch-diff.githubusercontent.com/CogStack/MedCAT/search?l=shell
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.