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Title: GitHub - CoXPath/CoXPath: Scripts and data from "Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms"

Open Graph Title: GitHub - CoXPath/CoXPath: Scripts and data from "Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms"

X Title: GitHub - CoXPath/CoXPath: Scripts and data from "Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms"

Description: Scripts and data from "Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms" - CoXPath/CoXPath

Open Graph Description: Scripts and data from "Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms" - CoX...

X Description: Scripts and data from "Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms&quo...

Opengraph URL: https://github.com/CoXPath/CoXPath

X: @github

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doi.org/10.1093/nar/gkab556http://doi.org/10.1093/nar/gkab556
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Citationhttps://patch-diff.githubusercontent.com/CoXPath/CoXPath#citation
Generating co-expression networks from ArrayExpresshttps://patch-diff.githubusercontent.com/CoXPath/CoXPath#generating-co-expression-networks-from-arrayexpress
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Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanismshttp://doi.org/10.1093/nar/gkab556
https://patch-diff.githubusercontent.com/CoXPath/CoXPath#setup-environment
https://patch-diff.githubusercontent.com/CoXPath/CoXPath#generating-co-expression-networks-from-arrayexpress
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https://patch-diff.githubusercontent.com/CoXPath/CoXPath#investigating-global-trends-of-disease-specific-co-expression-networks-at-the-node-level
https://patch-diff.githubusercontent.com/CoXPath/CoXPath#investigating-global-trends-of-disease-specific-co-expression-networks-at-the-edge-level
https://patch-diff.githubusercontent.com/CoXPath/CoXPath#overlaying-co-expression-networks-with-pathway-knowledge-supports-the-identification-of-disease-associated-pathways
https://patch-diff.githubusercontent.com/CoXPath/CoXPath#case-scenario-in-depth-investigation-of-the-long-term-potentiation-pathway-in-the-context-of-schizophrenia
https://patch-diff.githubusercontent.com/CoXPath/CoXPath#results
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https://patch-diff.githubusercontent.com/CoXPath/CoXPath#overview-of-disease-specific-co-expression-networks-1
Figure 4https://patch-diff.githubusercontent.com/CoXPath/CoXPath/blob/main/results/figures/figure4-centered.png
Supplementary figure 1https://patch-diff.githubusercontent.com/CoXPath/CoXPath/blob/main/results/figures/supp_figure1.png
Supplementary figure 2https://patch-diff.githubusercontent.com/CoXPath/CoXPath/blob/main/results/figures/supp_figure2.png
Supplementary table 1https://patch-diff.githubusercontent.com/CoXPath/CoXPath/blob/main/results/tables/supp_table1.tsv
https://patch-diff.githubusercontent.com/CoXPath/CoXPath#investigating-global-trends-of-disease-specific-co-expression-networks-at-the-node-level-1
Supplementary figure 3https://patch-diff.githubusercontent.com/CoXPath/CoXPath/blob/main/results/figures/supp_figure3.png
4,https://patch-diff.githubusercontent.com/CoXPath/CoXPath/blob/main/results/figures/supp_figure4.png
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Supplementary table 4https://patch-diff.githubusercontent.com/CoXPath/CoXPath/blob/main/results/tables/supp_table4.tsv
Figure 5https://patch-diff.githubusercontent.com/CoXPath/CoXPath/blob/main/results/figures/figure5.png
Supplementary table 5https://patch-diff.githubusercontent.com/CoXPath/CoXPath/blob/main/results/tables/supp_table5.tsv
https://patch-diff.githubusercontent.com/CoXPath/CoXPath#investigating-global-trends-of-disease-specific-co-expression-networks-at-the-edge-level-1
https://patch-diff.githubusercontent.com/CoXPath/CoXPath#overlaying-co-expression-networks-with-pathway-knowledge-supports-the-identification-of-disease-associated-pathways-1
Figure 6https://patch-diff.githubusercontent.com/CoXPath/CoXPath/blob/main/results/figures/figure6.png
Supplementary figure 16https://patch-diff.githubusercontent.com/CoXPath/CoXPath/blob/main/results/figures/supp_figure16.png
Supplementary table 6https://patch-diff.githubusercontent.com/CoXPath/CoXPath/blob/main/results/tables/supp_table6.tsv
Supplementary table 7https://patch-diff.githubusercontent.com/CoXPath/CoXPath/blob/main/results/tables/supp_table7.tsv
Supplementary table 8https://patch-diff.githubusercontent.com/CoXPath/CoXPath/blob/main/results/tables/supp_table8.tsv
Supplementary table 9https://patch-diff.githubusercontent.com/CoXPath/CoXPath/blob/main/results/tables/supp_table9.tsv
Supplementary table 10https://patch-diff.githubusercontent.com/CoXPath/CoXPath/blob/main/results/tables/supp_table10.tsv
https://patch-diff.githubusercontent.com/CoXPath/CoXPath#case-scenario-in-depth-investigation-of-the-long-term-potentiation-pathway-in-the-context-of-schizophrenia-1
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Supplementary table 11https://patch-diff.githubusercontent.com/CoXPath/CoXPath/blob/main/results/tables/supp_table11.tsv
doi.org/10.1093/nar/gkab556http://doi.org/10.1093/nar/gkab556
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