René's URL Explorer Experiment


Title: GitHub - CHTC/tutorial-CHTC-AF3: Tutorial on running Alphafold3 on CHTC's GPU open capacity.

Open Graph Title: GitHub - CHTC/tutorial-CHTC-AF3: Tutorial on running Alphafold3 on CHTC's GPU open capacity.

X Title: GitHub - CHTC/tutorial-CHTC-AF3: Tutorial on running Alphafold3 on CHTC's GPU open capacity.

Description: Tutorial on running Alphafold3 on CHTC's GPU open capacity. - CHTC/tutorial-CHTC-AF3

Open Graph Description: Tutorial on running Alphafold3 on CHTC's GPU open capacity. - CHTC/tutorial-CHTC-AF3

X Description: Tutorial on running Alphafold3 on CHTC's GPU open capacity. - CHTC/tutorial-CHTC-AF3

Mail addresses
chtc@cs.wisc.edu
chtc@cs.wisc.edu
chtc@cs.wisc.edu

Opengraph URL: https://github.com/CHTC/tutorial-CHTC-AF3

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:0e79c3e0-cbc9-cd3c-7d16-4bb7230ca1a2
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idE46C:C6633:140D754:19CEE1D:699249B2
html-safe-nonce77d2bdd6fef90af1e6c9965736314759dd726ab7a0c0da2106ec894521ca85d0
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJFNDZDOkM2NjMzOjE0MEQ3NTQ6MTlDRUUxRDo2OTkyNDlCMiIsInZpc2l0b3JfaWQiOiIzNDE5OTE5NTkwMTIxMTYzMTg2IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmac1b1c6320da8d032b32956aba5f7c11e25f2afe5409cb63fe35ddd303f966477e
hovercard-subject-tagrepository:1098473856
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/CHTC/tutorial-CHTC-AF3
twitter:imagehttps://opengraph.githubassets.com/51c9887a53d316895c22872160c29680ea6433072765a8eb000dfc92c12d339b/CHTC/tutorial-CHTC-AF3
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/51c9887a53d316895c22872160c29680ea6433072765a8eb000dfc92c12d339b/CHTC/tutorial-CHTC-AF3
og:image:altTutorial on running Alphafold3 on CHTC's GPU open capacity. - CHTC/tutorial-CHTC-AF3
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None42c603b9d642c4a9065a51770f75e5e27132fef0e858607f5c9cb7e422831a7b
turbo-cache-controlno-preview
go-importgithub.com/CHTC/tutorial-CHTC-AF3 git https://github.com/CHTC/tutorial-CHTC-AF3.git
octolytics-dimension-user_id10223564
octolytics-dimension-user_loginCHTC
octolytics-dimension-repository_id1098473856
octolytics-dimension-repository_nwoCHTC/tutorial-CHTC-AF3
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id1098473856
octolytics-dimension-repository_network_root_nwoCHTC/tutorial-CHTC-AF3
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release848bc6032dcc93a9a7301dcc3f379a72ba13b96e
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FCHTC%2Ftutorial-CHTC-AF3
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FCHTC%2Ftutorial-CHTC-AF3
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=CHTC%2Ftutorial-CHTC-AF3
Reloadhttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3
Reloadhttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3
Reloadhttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3
CHTC https://patch-diff.githubusercontent.com/CHTC
tutorial-CHTC-AF3https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FCHTC%2Ftutorial-CHTC-AF3
Fork 2 https://patch-diff.githubusercontent.com/login?return_to=%2FCHTC%2Ftutorial-CHTC-AF3
Star 3 https://patch-diff.githubusercontent.com/login?return_to=%2FCHTC%2Ftutorial-CHTC-AF3
3 stars https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/stargazers
2 forks https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/forks
Branches https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/branches
Tags https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/tags
Activity https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FCHTC%2Ftutorial-CHTC-AF3
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FCHTC%2Ftutorial-CHTC-AF3
Code https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3
Issues 3 https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/issues
Pull requests 0 https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/pulls
Actions https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/actions
Projects 0 https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/projects
Security 0 https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/security
Insights https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/pulse
Code https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3
Issues https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/issues
Pull requests https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/pulls
Actions https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/actions
Projects https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/projects
Security https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/security
Insights https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/pulse
Brancheshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/branches
Tagshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/tags
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/branches
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/tags
97 Commitshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/commits/main/
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/commits/main/
.imageshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/tree/main/.images
.imageshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/tree/main/.images
AF3_Jobshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/tree/main/AF3_Jobs
AF3_Jobshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/tree/main/AF3_Jobs
Toy_Datasethttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/tree/main/Toy_Dataset
Toy_Datasethttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/tree/main/Toy_Dataset
scriptshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/tree/main/scripts
scriptshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/tree/main/scripts
softwarehttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/tree/main/software
softwarehttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/tree/main/software
README.mdhttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/blob/main/README.md
data_pipeline.subhttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/blob/main/data_pipeline.sub
data_pipeline.subhttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/blob/main/data_pipeline.sub
inference_pipeline.subhttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/blob/main/inference_pipeline.sub
inference_pipeline.subhttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/blob/main/inference_pipeline.sub
READMEhttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#predicting-protein-structures-with-alphafold3-on-the-chtc-gpu-capacity
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#introduction
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/blob/main/.images/af3_overview.png
Introductionhttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#introduction
Tutorial Setuphttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#tutorial-setup
Understanding the AlphaFold3 Workflowhttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#understanding-the-alphafold3-workflow
Running AlphaFold3 on CHTChttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#running-alphafold3-on-chtc
Set Up Your Software Environmenthttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#set-up-your-software-environment
Data Wrangling and Preparing AlphaFold3 Inputshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#data-wrangling-and-preparing-alphafold3-inputs
Preparing Your List of (AlphaFold) Jobshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#preparing-your-list-of-alphafold-jobs
Submit Your AlphaFold3 Jobs - CPU-Intensive Alignment Generation (Step 1)https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#submit-your-alphafold3-jobs---cpu-intensive-alignment-generation-step-1
AlphaFold3 Databases Availability on CHTChttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#alphafold3-databases-availability-on-chtc
Submit Your AlphaFold3 Jobs - GPU-Accelerated Structural Prediction (Step 2)https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#submit-your-alphafold3-jobs---gpu-accelerated-structural-prediction-step-2
Visualize Your AlphaFold3 Resultshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#visualize-your-alphafold3-results
Next Stepshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#next-steps
Reference Materialhttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#reference-material
Overview: AlphaFold3 Data Pipeline Executable (Data-Only Stage)https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#overview-alphafold3-data-pipeline-executable-data-only-stage
Overview: AlphaFold3 Inference Pipeline Executablehttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#overview-alphafold3-inference-pipeline-executable
Glossaryhttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#glossary
Softwarehttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#software
Datahttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#data
GPUshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#gpus
Getting Helphttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#getting-help
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#tutorial-setup
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#before-you-begin
CHTC Account Request Pagehttps://chtc.cs.wisc.edu/uw-research-computing/form.html
"Roadmap to getting started "https://chtc.cs.wisc.edu/uw-research-computing/htc-roadmap/
"Practice: Submit HTC Jobs using HTCondor"https://chtc.cs.wisc.edu/uw-research-computing/htcondor-job-submission
DeepMind AlphaFold Teamhttps://github.com/google-deepmind/alphafold3/blob/main/docs/installation.md#obtaining-model-parameters
"Roadmap to getting started "https://chtc.cs.wisc.edu/uw-research-computing/htc-roadmap/
"Practice: Submit HTC Jobs using HTCondor"https://chtc.cs.wisc.edu/uw-research-computing/htcondor-job-submission
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#time-estimation
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#clone-the-tutorial-repository
DeepMind AlphaFold Teamhttps://github.com/google-deepmind/alphafold3/blob/main/docs/installation.md#obtaining-model-parameters
Transfer Files between CHTC and your Computerhttps://chtc.cs.wisc.edu/uw-research-computing/transfer-files-computer
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#about-the-dataset
Setting Up AlphaFold3 Input JSONs and Job Directorieshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#setting-up-alphafold3-input-jsons-and-job-directories
Sabethes Cyaneushttps://en.wikipedia.org/wiki/Sabethes_cyaneus
Aedes aegyptihttps://en.wikipedia.org/wiki/Aedes_aegypti
Aedes albopictushttps://en.wikipedia.org/wiki/Aedes_albopictus
Aedes aegyptihttps://en.wikipedia.org/wiki/Aedes_aegypti
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#understanding-the-alphafold3-workflow
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#the-cpu-only-pipeline-generating-alignments-stage-1
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#the-gpu-accelerated-pipeline-structural-prediction-stage-2
Key AF3 GPU considerationshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#key-af3-gpu-considerations
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#running-alphafold3-on-chtc
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#set-up-your-software-environment
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#data-wrangling-and-preparing-alphafold3-inputs
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#preparing-your-list-of-alphafold-jobs
Submit Multiple Jobs Using HTCondorhttps://chtc.cs.wisc.edu/uw-research-computing/multiple-jobs.html
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#submit-your-alphafold3-jobs---cpu-intensive-alignment-generation-step-1
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/blob/main/.images/data_pipeline.png
link to sectionhttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#overview-alphafold3-data-pipeline-executable-data-only-stage
Setting Up AlphaFold3 Input JSONs and Job Directorieshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#data-wrangling-and-preparing-alphafold3-inputs
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#alphafold3-databases-on-chtc
Request variable memoryhttps://chtc.cs.wisc.edu/uw-research-computing/variable-memory#use-retry_request_memory
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#submit-your-alphafold3-jobs---gpu-accelerated-structural-prediction-step-2
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/blob/main/.images/inference_pipeline.png
link to sectionhttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#overview-alphafold3-inference-pipeline-executable
Scale Beyond Local HTC Capacityhttps://chtc.cs.wisc.edu/uw-research-computing/scaling-htc
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#choosing-appropriate-gpu-resources
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#visualize-your-alphafold3-results
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/blob/main/.images/pymol.png
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#next-steps
CHTC Help Pagehttps://chtc.cs.wisc.edu/uw-research-computing/get-help.html
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#reference-material
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#overview-alphafold3-data-pipeline-executable-data-only-stage
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#1-checking-for-pre-staged-af3-databases
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#2-command-line-options
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#3-working-directory-setup
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#4-running-the-alphafold3-data-pipeline
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#5-packaging-results
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#overview-alphafold3-inference-pipeline-executable
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#1-model-parameters-and-containers
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#2-command-line-options-1
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#3-working-directory-setup-1
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#4-preparing-model-weights
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#5-gpu-capability-handling
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#6-running-the-alphafold3-inference-stage
Handling Large Complexeshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/blob/main
AlphaFold3 GitHub Repositoryhttps://github.com/google-deepmind/alphafold3/
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#7-packaging-results
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#8-cleanup
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#glossary
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#software
Using Apptainer/Singularity Containershttps://chtc.cs.wisc.edu/uw-research-computing/apptainer-htc#main
Using Docker Containershttps://chtc.cs.wisc.edu/uw-research-computing/docker-jobs#main
Using Software on CHTChttps://chtc.cs.wisc.edu/uw-research-computing/software-overview-htc#main
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#data
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#key-af3-data-components-include
Data Staging and Transfer to Jobshttps://chtc.cs.wisc.edu/uw-research-computing/htc-job-file-transfer
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#gpus
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#key-af3-gpu-considerations
GPU Guide on CHTC Documentation Portalhttps://chtc.cs.wisc.edu/uw-research-computing/gpu-jobs
https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#getting-help
CHTC Guideshttps://chtc.cs.wisc.edu/uw-research-computing/htc/guides.html
Email, Office Hours, and 1-1 Meetingshttps://chtc.cs.wisc.edu/uw-research-computing/get-help.html
Get Helphttps://chtc.cs.wisc.edu/uw-research-computing/get-help.html
Readme https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3#readme-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3
Activityhttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/activity
Custom propertieshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/custom-properties
3 starshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/stargazers
0 watchinghttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/watchers
2 forkshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FCHTC%2Ftutorial-CHTC-AF3&report=CHTC+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/CHTC/packages?repo_name=tutorial-CHTC-AF3
Contributors 3https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3
Shell 75.9% https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/search?l=shell
Python 24.1% https://patch-diff.githubusercontent.com/CHTC/tutorial-CHTC-AF3/search?l=python
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.