René's URL Explorer Experiment


Title: GitHub - BlueBrain/BioExplorer: The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

Open Graph Title: GitHub - BlueBrain/BioExplorer: The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

X Title: GitHub - BlueBrain/BioExplorer: The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

Description: The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration - BlueBrain/BioExplorer

Open Graph Description: The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration - BlueBrain/BioExplorer

X Description: The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration - BlueBrain/BioExplorer

Opengraph URL: https://github.com/BlueBrain/BioExplorer

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:3630b612-2121-bcd4-120c-3eb95c64d0d9
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idDEEC:28FABF:2858EE0:341557F:698C1550
html-safe-nonce52af017c99551edaef2441cce5d81722a5ef3c9974d8f137bb584b4d7f77325d
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJERUVDOjI4RkFCRjoyODU4RUUwOjM0MTU1N0Y6Njk4QzE1NTAiLCJ2aXNpdG9yX2lkIjoiMzI0ODQ1MTA4Njc3NjUzODQ0OCIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac0ef1d32180802f24d79bbf35693d85fdd2320025741e2de777876254c98b7c6b
hovercard-subject-tagrepository:335964990
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/BlueBrain/BioExplorer
twitter:imagehttps://repository-images.githubusercontent.com/335964990/991c16be-21e7-4fc7-85f9-f96bfc387589
twitter:cardsummary_large_image
og:imagehttps://repository-images.githubusercontent.com/335964990/991c16be-21e7-4fc7-85f9-f96bfc387589
og:image:altThe Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration - BlueBrain/BioExplorer
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None640eeb7b6ff4d8d106235d228c0c286e82592d4d2403227b5b2b4fc5832297a4
turbo-cache-controlno-preview
go-importgithub.com/BlueBrain/BioExplorer git https://github.com/BlueBrain/BioExplorer.git
octolytics-dimension-user_id1479142
octolytics-dimension-user_loginBlueBrain
octolytics-dimension-repository_id335964990
octolytics-dimension-repository_nwoBlueBrain/BioExplorer
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id335964990
octolytics-dimension-repository_network_root_nwoBlueBrain/BioExplorer
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release3d444f0a47beeeac94cddbb51c91ab408befe8d4
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FBlueBrain%2FBioExplorer
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FBlueBrain%2FBioExplorer
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=BlueBrain%2FBioExplorer
Reloadhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer
Reloadhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer
Reloadhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer
BlueBrain https://patch-diff.githubusercontent.com/BlueBrain
BioExplorerhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FBlueBrain%2FBioExplorer
Fork 11 https://patch-diff.githubusercontent.com/login?return_to=%2FBlueBrain%2FBioExplorer
Star 66 https://patch-diff.githubusercontent.com/login?return_to=%2FBlueBrain%2FBioExplorer
portal.bluebrain.epfl.ch/resources/software/exploration/https://portal.bluebrain.epfl.ch/resources/software/exploration/
Apache-2.0 license https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/LICENSE.md
66 stars https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/stargazers
11 forks https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/forks
Branches https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/branches
Tags https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tags
Activity https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FBlueBrain%2FBioExplorer
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FBlueBrain%2FBioExplorer
Code https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer
Issues 0 https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/issues
Pull requests 0 https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/pulls
Actions https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/actions
Projects 0 https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/projects
Wiki https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/wiki
Security 0 https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/security
Insights https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/pulse
Code https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer
Issues https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/issues
Pull requests https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/pulls
Actions https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/actions
Projects https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/projects
Wiki https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/wiki
Security https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/security
Insights https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/pulse
Brancheshttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/branches
Tagshttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tags
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/branches
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tags
1,491 Commitshttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/commits/master/
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/commits/master/
.github/workflowshttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tree/master/.github/workflows
.github/workflowshttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tree/master/.github/workflows
CMakehttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tree/master/CMake
CMakehttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tree/master/CMake
bioexplorerhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tree/master/bioexplorer
bioexplorerhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tree/master/bioexplorer
commonhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tree/master/common
commonhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tree/master/common
extensionshttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tree/master/extensions
extensionshttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tree/master/extensions
packaging/AppImagehttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tree/master/packaging/AppImage
packaging/AppImagehttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tree/master/packaging/AppImage
platformhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tree/master/platform
platformhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tree/master/platform
storage/databasehttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tree/master/storage/database
storage/databasehttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/tree/master/storage/database
.clang-formathttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/.clang-format
.clang-formathttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/.clang-format
.gitignorehttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/.gitignore
.gitmoduleshttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/.gitmodules
.gitmoduleshttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/.gitmodules
ARCHITECTURE.mdhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/ARCHITECTURE.md
ARCHITECTURE.mdhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/ARCHITECTURE.md
AUTHORS.txthttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/AUTHORS.txt
AUTHORS.txthttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/AUTHORS.txt
CMakeLists.txthttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/CMakeLists.txt
CMakeLists.txthttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/CMakeLists.txt
CONTRIBUTING.mdhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/CONTRIBUTING.md
CONTRIBUTING.mdhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/CONTRIBUTING.md
DOCKER.mdhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/DOCKER.md
DOCKER.mdhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/DOCKER.md
Dockerfilehttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/Dockerfile
Dockerfilehttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/Dockerfile
LICENSE.mdhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/LICENSE.md
LICENSE.mdhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/LICENSE.md
README.mdhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/README.md
docker-compose.ymlhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/docker-compose.yml
docker-compose.ymlhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/docker-compose.yml
READMEhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer
Contributinghttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer
Apache-2.0 licensehttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#blue-brain-bioexplorer
https://github.com/BlueBrain/BioExplorer/tags
https://github.com/BlueBrain/BioExplorer/blob/master/LICENSE.md
https://github.com/BlueBrain/BioExplorer/forks
https://github.com/BlueBrain/BioExplorer/stargazers
https://github.com/BlueBrain/BioExplorer/network/members
http://www.pydocstyle.org/
https://pypi.org/project/pycodestyle/
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/notebooks/bioexplorer_banner.png
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#description
A Machine-Generated View of the Role of Blood Glucose Levels in the Severity of COVID-19https://www.frontiersin.org/articles/10.3389/fpubh.2021.695139/full?utm_source=fweb&utm_medium=nblog&utm_campaign=ba-sci-fpubh-covid-19-elevated-blood-glucose-blue-brain
https://youtu.be/Czn-YGLGfiA
https://lnkd.in/e57vqgcq
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#an-extended-and-improved-ccfv3-annotation
https://www.youtube.com/watch?v=upulBqczL0g
An extended and improved CCFv3 annotation and Nissl atlas of the entire mouse brainhttps://www.biorxiv.org/content/10.1101/2024.11.06.622212v1
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#the-harvard-brain
Studies In Silico: An Interview With Cyrille Favreau On EPFL’s Blue Brain Projecthttp://www.theharvardbrain.com/spring-2023-8203lara-ota-buse-toksoumlz-and-kei-hayashi.html
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#social-media
Blue Brain BioExplorer 1.6 goes RTX!https://www.linkedin.com/feed/update/urn:li:activity:7057015980253696000/
On the third anniversary of the first lockdown, we look back at how Machine Learning helped reveal the role of blood glucose levels in the severity of COVID-19.https://www.linkedin.com/posts/blue-brain-project_machine-learning-and-understanding-the-role-activity-7044953592570535937-s6IB?utm_source=share&utm_medium=member_desktop
If you’re traveling to Spain over the holiday break, don’t miss the amazing exhibition Brain(s) opening soon in Madrid featuring images from the EPFL Blue Brain Project. Join the more than 86'000 visitors who already enjoyed it while on its Barcelona stop!https://www.linkedin.com/posts/blue-brain-project_if-youre-traveling-to-spain-over-the-holiday-activity-7009472054114533376-Serk?utm_source=share&utm_medium=member_desktop
The BlueBrainBioExplorer 1.4 is now out and ready to explore additional bio assemblies from neurons and astrocytes to vasculatures and more!https://www.linkedin.com/posts/blue-brain-project_openscience-neuroscience-scientificvisualization-activity-6980420229633867776-ViVr?utm_source=share&utm_medium=member_desktop
The EPFL Blue Brain Project will be featuring in the exciting Brain(s) exhibition at the Barcelona Centre of Contemporary Culture starting tomorrow!https://www.linkedin.com/posts/blue-brain-project_cervellscccb-cerebroscccb-brainscccb-activity-6957702754731450369-gsLV?utm_source=share&utm_medium=member_desktop
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#bioexplorer-at-pasc-2023
https://camo.githubusercontent.com/5037000af484c7751946cc6b903b3ea30f77534dee0d659a90e90524f75153f9/68747470733a2f2f7777772e706173632d636f6e666572656e63652e6f72672f77702d636f6e74656e742f75706c6f6164732f323032322f30372f504153435f32335f322e6a7067
https://pasc23.pasc-conference.org/presentation/?id=msa164&sess=sess168https://pasc23.pasc-conference.org/presentation/?id=msa164&sess=sess168
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#bioexplorer-goes-rtx
NVIDIA OptiXhttps://developer.nvidia.com/rtx/ray-tracing/optix
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#at-the-museum
Brain(s) exhibitionhttps://www.cccb.org/en/exhibitions/file/brains/237851
https://camo.githubusercontent.com/1cde6228ba8cef44907456451d2900942aad4bf6337ef942a5a8296e2cd67372/68747470733a2f2f616374752e6570666c2e63682f696d6167652f3132313730302f31313038783632322e6a7067
news articlehttps://actu.epfl.ch/news/blue-brain-images-on-show-at-the-brains-exhibition/
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#architecture
Blue Brain Braynshttps://github.com/BlueBrain/Brayns/releases/tag/1.0.0
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/doc/source/images/architecture.png
architecturehttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/ARCHITECTURE.md
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#general-components
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#assemblies
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#proteins
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/notebooks/bioexplorer_proteins_banner.png
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#glycans
Glycam Builderhttp://glycam.org
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/notebooks/bioexplorer_glycans_banner.png
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#rna-sequence
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#mesh-based-membranes
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#virus
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/notebooks/bioexplorer_coronavirus_banner.png
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#membrane
VMDhttps://www.ks.uiuc.edu/Research/vmd
tutorialhttp://www.ks.uiuc.edu/Training/Tutorials
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/notebooks/bioexplorer_membrane_banner.png
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#vasculature
schemahttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/storage/database/04_bioexplorer_vasculature_schema.sql
notebookhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/notebooks/vasculature/BioExplorer_import_sonata_to_db.ipynb
Sonatahttps://github.com/AllenInstitute/sonata
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/notebooks/bioexplorer_vasculature_banner.png
Blue Brain Neuro-Glia-Vasculature Portalhttps://bbp.epfl.ch/ngv-portal/anatomy/experimental-data/
Brain microvasculature has a common topology with local differences in geometry that match metabolic loadhttps://www.cell.com/neuron/fulltext/S0896-6273(21)00080-5?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0896627321000805%3Fshowall%3Dtrue
Blue Brain Neuro-Glia-Vasculature Portal. Vasculature. Reconstruction Datahttps://bbp.epfl.ch/ngv-portal/#explore
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#neurons
schemahttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/storage/database/02_bioexplorer_neurons_schema.sql
notebookhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/notebooks/neurons/BioExplorer_import_sonata_to_db.ipynb
Sonatahttps://github.com/AllenInstitute/sonata
example datasethttps://zenodo.org/record/6906785#.Ywym7tVBxH6
Model of Rat Non-barrel Somatosensory Cortex Anatomyhttps://www.biorxiv.org/content/10.1101/2022.08.11.503144v1
Sonatahttps://github.com/AllenInstitute/sonata
jupyter notebookhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/notebooks/neurons/rat_non-barrel_somatosensory_cortex_anatomy/BioExplorer_rat_non-barrel_somatosensory_cortex_anatomy.ipynb
NeuroMhttps://neurom.readthedocs.io/en/stable/
Blue Brain SNAPhttps://bluebrainsnap.readthedocs.io/en/stable/
A Model of Rat Non-barrel Somatosensory Cortex Anatomyhttps://www.biorxiv.org/content/10.1101/2022.08.11.503144v1
A simplified morphological classification scheme for pyramidal cells in six layers of primary somatosensory cortex of juvenile ratshttps://www.sciencedirect.com/science/article/pii/S2451830118300293
Age and sex do not affect the volume, cell numbers, or cell size of the suprachiasmatic nucleus of the rat: An unbiased stereologicalhttps://doi.org/10.1002/cne.903610404
Community-based Reconstruction and Simulation of a Full-scale Model of Region CA1 of Rat Hippocampushttps://www.biorxiv.org/content/10.1101/2023.05.17.541167v1
Modeling and Simulation of Neocortical Micro- and Mesocircuitry. Part II: Physiology and Experimentationhttps://www.biorxiv.org/content/10.1101/2023.05.17.541168v2
Community-based reconstruction and simulation of a full-scale model of the rat hippocampus CA1 regionhttps://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3002861
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#astrocytes
schemahttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/storage/database/03_bioexplorer_astrocytes_schema.sql
notebookhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/notebooks/astrocytes/BioExplorer_import_sonata_to_db.ipynb
Sonatahttps://github.com/AllenInstitute/sonata
schemahttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/storage/database/05_bioexplorer_connectome_schema.sql
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/notebooks/bioexplorer_neurons_banner.png
signed distance fieldhttps://iquilezles.org/articles/distfunctions/
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/doc/source/images/microcircuit.png
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/doc/source/images/synapses.png
Blue Brain Neuro-Glia-Vasculature Portalhttps://bbp.epfl.ch/ngv-portal/anatomy/experimental-data/
Thalamic control of sensory enhancement and sleep spindle properties in a biophysical model of thalamoreticular microcircuitryhttp://biorxiv.org/lookup/doi/10.1101/2022.02.28.482273
Computational synthesis of cortical dendritic morphologieshttps://doi.org/10.1016/j.celrep.2022.110586
Digital reconstruction of the neuro-glia-vascular architecturehttps://doi.org/10.1093/cercor/bhab254
Blue Brain Neuro-Glia-Vasculature Portal. Anatomy. Reconstruction Datahttps://bbp.epfl.ch/ngv-portal/anatomy/reconstruction-data/
The SONATA data format for efficient description of large-scale network modelshttps://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007696
Cortical cell assemblies and their underlying connectivity: an in silico studyhttps://www.biorxiv.org/content/10.1101/2023.02.24.529863v1
Modeling and Simulation of Neocortical Micro- and Mesocircuitry. Part II: Physiology and Experimentationhttps://www.biorxiv.org/content/10.1101/2023.05.17.541168v1
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/doc/source/images/synapses2.png
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#spinal-cord
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/notebooks/bioexplorer_spinal_cord_banner.png
Digital reconstruction of the mammalian spinal cord: from anatomical reference volume to cell type atlas of the mouse spinal cordhttps://infoscience.epfl.ch/record/302106
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#simulation-of-neuronal-activity
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#morphology-synthesis
computational synthesis of cortical dendritic morphologieshttps://www.sciencedirect.com/science/article/pii/S2211124722003308
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/doc/source/images/synthesis.png
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#proximity-detection
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/doc/source/images/touchdetection.png
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#white-matter-and-tractography
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#white-matter
Python notebook examplehttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/notebooks/connectomics/BioExplorer_import_white_matter_allen_brain.ipynb
Allen Brain Institute websitehttps://alleninstitute.org
Python notebookhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/notebooks/connectomics/BioExplorer_white_matter.ipynb
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/doc/source/images/white_matter.png
Allen Brain Institute: mouse connectivity projectionshttp://connectivity.brain-map.org/
Allen Brain Institute: mouse connectivity atlashttps://alleninstitute.github.io/AllenSDK/connectivity.html
null model of the mouse whole-neocortex micro-connectomehttps://www.nature.com/articles/s41467-019-11630-x
https://www.youtube.com/watch?v=6cBNdAn04Qw
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#tractography
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/doc/source/images/tractography.png
Python notebook examplehttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/notebooks/tractography/BioExplorer_ISMRM_2015_Tracto_challenge_ground_truth_bundles_TRK_v2.ipynb
Tractography Challenge ISMRM 2015https://zenodo.org/record/572345
Tractography Challenge ISMRM 2015https://zenodo.org/record/572345
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#enzyme-reactions
Hexokinasehttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/notebooks/molecular_systems/BioExplorer_enzyme_reaction.ipynb
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/notebooks/bioexplorer_enzyme_reactions_banner.png
Blue Brain Project Neuro-Glia-Vasculature Portalhttps://bbp.epfl.ch/ngv-portal/
Blue Brain Neuro-Glia-Vasculature Portal. Metabolism. Reconstruction Datahttps://bbp.epfl.ch/ngv-portal/#explore
Breakdown and rejuvenation of aging brain energy metabolismhttps://www.biorxiv.org/content/10.1101/2023.08.30.555341v1
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#neuromodulation
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/notebooks/bioexplorer_neuromodulation_banner.png
Neuromodulation of neocortical microcircuitry: a multi-scale framework to model the effects of cholinergic releasehttps://infoscience.epfl.ch/record/294819
The cholinergic innervation develops early and rapidly in the rat cerebral cortex: a quantitative immunocytochemical studyhttps://www.sciencedirect.com/science/article/abs/pii/S030645220100389X
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#extensions
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#space-explorer
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#black-holes
Shadertoyhttps://www.shadertoy.com
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/extensions/cosmology/docs/blackhole_banner.png
Black hole with accretion diskhttps://www.shadertoy.com/view/tsBXW3
Example notebookhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/extensions/cosmology/notebooks/Gaia_ESA.ipynb
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#medical-imaging-explorer
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#dicom
NEMAhttps://www.nema.org
ACRhttps://www.acr.org
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/extensions/medicalimaging/docs/dicom_banner.png
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#environment
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#geological-data
Example notebookhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/extensions/environment/notebooks/Charm-50.ipynb
InfoTerrehttp://infoterre.brgm.fr/
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#physics
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#nuclear-fusion
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/extensions/physics/nuclearfusion/notebooks/nuclearfusion_banner.png
Example notebookhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/extensions/physics/nuclearfusion/notebooks/NuclearFusion.ipynb
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#python-sdk
pypihttps://pypi.org/project/bioexplorer/
notebookshttps://github.com/BlueBrain/BioExplorer/tree/master/bioexplorer/pythonsdk/notebooks
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#documentation
herehttps://bluebrain.github.io/BioExplorer/
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#deployment
serverhttps://hub.docker.com/r/bluebrain/bioexplorer
python SDKhttps://hub.docker.com/r/bluebrain/bioexplorer-python-sdk
web user interfacehttps://hub.docker.com/r/bluebrain/bioexplorer-ui
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#server
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#python-sdk-1
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#web-user-interface
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#postgresql-database
Docker Database documentationhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/storage/database/DOCKER.md
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/bioexplorer/pythonsdk/doc/source/images/BBBE_screenshot.png
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#building-from-source
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#bioexplorer
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#compile
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#run
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#simple-example
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#license
Apache 2.0https://www.apache.org/licenses/LICENSE-2.0
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#contact
Cyrille Favreauhttps://www.epfl.ch/research/domains/bluebrain/blue-brain/people/our-people/operations-division/cyrille-favreau/
cyrille.favreau@epfl.chhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/cyrille.favreau@epfl.ch
Emmanuelle Logettehttps://www.epfl.ch/research/domains/bluebrain/blue-brain/people/our-people/simulation-neuroscience-division/emmanuelle-logette/
emmanuelle.logette@epfl.chhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/emmanuelle.logette@epfl.ch
Evelyne Schmid Osbornehttps://www.epfl.ch/research/domains/bluebrain/blue-brain/people/our-people/operations-division/evelyne-schmid-osborne/
evelyne.schmidosborne@epfl.chhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/blob/master/evelyne.schmidosborne@epfl.ch
Daniel Nachbaurhttps://github.com/tribal-tec
Jonas Karlssonhttps://github.com/karjonas
Andrei-Roland Grozahttps://github.com/rolandjitsu
Grigori Chevtchenkohttps://github.com/chevtche
Pawel Jozef Podhajskihttps://github.com/ppodhajski
https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#funding--acknowledgment
portal.bluebrain.epfl.ch/resources/software/exploration/https://portal.bluebrain.epfl.ch/resources/software/exploration/
python https://patch-diff.githubusercontent.com/topics/python
science https://patch-diff.githubusercontent.com/topics/science
virus https://patch-diff.githubusercontent.com/topics/virus
neuroimaging https://patch-diff.githubusercontent.com/topics/neuroimaging
raytracing https://patch-diff.githubusercontent.com/topics/raytracing
rendering-engine https://patch-diff.githubusercontent.com/topics/rendering-engine
neuron https://patch-diff.githubusercontent.com/topics/neuron
brain https://patch-diff.githubusercontent.com/topics/brain
molecular-biology https://patch-diff.githubusercontent.com/topics/molecular-biology
dti https://patch-diff.githubusercontent.com/topics/dti
virology https://patch-diff.githubusercontent.com/topics/virology
astrocyte https://patch-diff.githubusercontent.com/topics/astrocyte
immune-system https://patch-diff.githubusercontent.com/topics/immune-system
neurosimulation https://patch-diff.githubusercontent.com/topics/neurosimulation
coronavirus https://patch-diff.githubusercontent.com/topics/coronavirus
covid19 https://patch-diff.githubusercontent.com/topics/covid19
sars-cov-2 https://patch-diff.githubusercontent.com/topics/sars-cov-2
glucose-levels https://patch-diff.githubusercontent.com/topics/glucose-levels
vasculature https://patch-diff.githubusercontent.com/topics/vasculature
viral-infection https://patch-diff.githubusercontent.com/topics/viral-infection
Readme https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#readme-ov-file
Apache-2.0 license https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#Apache-2.0-1-ov-file
Contributing https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer#contributing-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer
Activityhttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/activity
Custom propertieshttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/custom-properties
66 starshttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/stargazers
2 watchinghttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/watchers
11 forkshttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FBlueBrain%2FBioExplorer&report=BlueBrain+%28user%29
Releases 12https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/releases
2.0.0 Latest Jul 15, 2024 https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/releases/tag/2.0.0
+ 11 releaseshttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/BlueBrain/packages?repo_name=BioExplorer
Please reload this pagehttps://patch-diff.githubusercontent.com/BlueBrain/BioExplorer
Contributors 2https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/graphs/contributors
https://github.com/favreau
favreau Cyrille Favreau https://github.com/favreau
https://github.com/jplanasc
jplanasc Judit https://github.com/jplanasc
C++ 65.2% https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/search?l=c%2B%2B
Jupyter Notebook 16.5% https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/search?l=jupyter-notebook
TypeScript 7.4% https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/search?l=typescript
Python 6.2% https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/search?l=python
CMake 2.1% https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/search?l=cmake
Cuda 1.9% https://patch-diff.githubusercontent.com/BlueBrain/BioExplorer/search?l=cuda
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.