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Title: GitHub - BaderLab/sciRED

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Open Graph Description: Contribute to BaderLab/sciRED development by creating an account on GitHub.

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d.pouyabahar@mail.utoronto.ca

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Pouyabahar et al. Interpretable single-cell factor decomposition using sciRED.https://www.nature.com/articles/s41467-025-57157-2
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