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Open Graph Title: AdamaJava/adamajava

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Description: Contribute to AdamaJava/adamajava development by creating an account on GitHub.

Open Graph Description: Contribute to AdamaJava/adamajava development by creating an account on GitHub.

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Reproducing TelomereHunter's telomere contenthttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues/367
23Niklashttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues?q=is%3Aissue%20state%3Aopen%20author%3A23Niklas
Difficulty Extracting Telomere Length Data from qmotif XML Outputhttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues/351
CHOWDHURY098https://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues?q=is%3Aissue%20state%3Aopen%20author%3ACHOWDHURY098
addition of hg38 telomere coordinates for qmotifhttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues/346
squigzzzhttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues?q=is%3Aissue%20state%3Aopen%20author%3Asquigzzz
multi threading bug in XmlUtils.updateMapWithLimithttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues/333
holmesohttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues?q=is%3Aissue%20state%3Aopen%20author%3Aholmeso
org.qcmg.picard.SAMFileReaderFactory keeps spawning processeshttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues/330
ZhaoxiangSimonCaihttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues?q=is%3Aissue%20state%3Aopen%20author%3AZhaoxiangSimonCai
Default value for build (37) is always used in maf filehttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues/324
holmesohttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues?q=is%3Aissue%20state%3Aopen%20author%3Aholmeso
input format issue on qbasepileup indel mode https://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues/305
ChristinaXu2017https://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues?q=is%3Aissue%20state%3Aopen%20author%3AChristinaXu2017
input output format issue on qbasepileup coverage modehttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues/304
ChristinaXu2017https://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues?q=is%3Aissue%20state%3Aopen%20author%3AChristinaXu2017
qp2 produces different output with different threading optionshttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues/289
bugSomething isn't workinghttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues?q=is%3Aissue%20state%3Aopen%20label%3Abug
holmesohttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues?q=is%3Aissue%20state%3Aopen%20author%3Aholmeso
QSamToFastq.java exceptionhttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues/281
ChristinaXu2017https://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues?q=is%3Aissue%20state%3Aopen%20author%3AChristinaXu2017
At least some of our VCFs are invalid according to the VCF spec. https://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues/265
grendelozhttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues?q=is%3Aissue%20state%3Aopen%20author%3Agrendeloz
qprofiler - Fastq mode can't convert String to Integerhttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues/248
holmesohttps://patch-diff.githubusercontent.com/AdamaJava/adamajava/issues?q=is%3Aissue%20state%3Aopen%20author%3Aholmeso
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