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Title: Welcome to the Ops documentation! — SciJava Ops documentation

direct link

Domain: ops.scijava.org

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readthedocs-project-slugscijava-ops
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Links:

https://ops.scijava.org
Purposehttps://ops.scijava.org/Purpose.html
Conceptshttps://ops.scijava.org/Concepts.html
Installationhttps://ops.scijava.org/Installation.html
Scripting in Fijihttps://ops.scijava.org/ScriptingInFiji.html
Searching for Ops in the Environmenthttps://ops.scijava.org/SearchingForOps.html
Calling Ops with the OpBuilderhttps://ops.scijava.org/CallingOps.html
Reasoning about Opshttps://ops.scijava.org/IntrospectingOps.html
Richardson-Lucy Total Variation Deconvolutionhttps://ops.scijava.org/examples/deconvolution.html
FLIM Analysishttps://ops.scijava.org/examples/flim_analysis.html
Gaussian Blur Subtractionhttps://ops.scijava.org/examples/gaussian_subtraction.html
3D Analysis and Visualizationhttps://ops.scijava.org/examples/mesh_viz.html
Fast Non-Local Means Denoise with OpenCVhttps://ops.scijava.org/examples/opencv_denoise.html
Spatially Adaptive Colocalization Analysishttps://ops.scijava.org/examples/saca.html
SciJava Ops from Pythonhttps://ops.scijava.org/examples/scyjava.html
Volumetric Labeling and 3D Geometry Analysishttps://ops.scijava.org/examples/volume_labeling.html
Writing Your Own Op Packagehttps://ops.scijava.org/WritingYourOwnOpPackage.html
Parameter Conversion for Developershttps://ops.scijava.org/ParameterConversion.html
Migrating Ops Written for ImageJ Opshttps://ops.scijava.org/MigratingFromImageJOps.html
SciJava Ops Benchmarkshttps://ops.scijava.org/Benchmarks.html
SciJava Ops: An Improved Algorithms Framework for Fiji and Beyondhttps://ops.scijava.org/paper-2024/index.html
SciJava Opshttps://ops.scijava.org
https://ops.scijava.org
Edit on GitHubhttps://github.com/scijava/scijava/blob/main/docs/ops/doc/index.rst
https://ops.scijava.org#welcome-to-the-ops-documentation
Purposehttps://ops.scijava.org/Purpose.html
Driving Valueshttps://ops.scijava.org/Purpose.html#driving-values
How does SciJava Ops compare with ImageJ Ops?https://ops.scijava.org/Purpose.html#how-does-scijava-ops-compare-with-imagej-ops
How do we integrate all of these different libraries and data structures?https://ops.scijava.org/Purpose.html#how-do-we-integrate-all-of-these-different-libraries-and-data-structures
Conceptshttps://ops.scijava.org/Concepts.html
Opshttps://ops.scijava.org/Concepts.html#ops
Computershttps://ops.scijava.org/Concepts.html#computers
Functionshttps://ops.scijava.org/Concepts.html#functions
Inplaceshttps://ops.scijava.org/Concepts.html#inplaces
OpEnvironmenthttps://ops.scijava.org/Concepts.html#openvironment
OpBuilderhttps://ops.scijava.org/Concepts.html#opbuilder
Installationhttps://ops.scijava.org/Installation.html
Fijihttps://ops.scijava.org/Installation.html#fiji
Scripting in Fijihttps://ops.scijava.org/ScriptingInFiji.html
Obtaining an OpEnvironmenthttps://ops.scijava.org/ScriptingInFiji.html#obtaining-an-openvironment
Setting inputs and outputshttps://ops.scijava.org/ScriptingInFiji.html#setting-inputs-and-outputs
Calling Opshttps://ops.scijava.org/ScriptingInFiji.html#calling-ops
Putting it all togetherhttps://ops.scijava.org/ScriptingInFiji.html#putting-it-all-together
Add your Op to the menuhttps://ops.scijava.org/ScriptingInFiji.html#add-your-op-to-the-menu
Next stepshttps://ops.scijava.org/ScriptingInFiji.html#next-steps
Searching for Ops in the Environmenthttps://ops.scijava.org/SearchingForOps.html
Listing Namespaceshttps://ops.scijava.org/SearchingForOps.html#listing-namespaces
Querying a Namespacehttps://ops.scijava.org/SearchingForOps.html#querying-a-namespace
Querying Op Signatureshttps://ops.scijava.org/SearchingForOps.html#querying-op-signatures
In-depth Op Informationhttps://ops.scijava.org/SearchingForOps.html#in-depth-op-information
Calling Ops with the OpBuilderhttps://ops.scijava.org/CallingOps.html
Specifying the name with .op()https://ops.scijava.org/CallingOps.html#specifying-the-name-with-op
Passing the inputs with .input()https://ops.scijava.org/CallingOps.html#passing-the-inputs-with-input
Passing an output buffer with .output()https://ops.scijava.org/CallingOps.html#passing-an-output-buffer-with-output
Computing with .compute()https://ops.scijava.org/CallingOps.html#computing-with-compute
Variations on usehttps://ops.scijava.org/CallingOps.html#variations-on-use
Common Pitfalls: Wildcardshttps://ops.scijava.org/CallingOps.html#common-pitfalls-wildcards
Reasoning about Opshttps://ops.scijava.org/IntrospectingOps.html
Obtaining an Op referencehttps://ops.scijava.org/IntrospectingOps.html#obtaining-an-op-reference
Op Infoshttps://ops.scijava.org/IntrospectingOps.html#op-infos
Implementations and Versionshttps://ops.scijava.org/IntrospectingOps.html#implementations-and-versions
Op Signatureshttps://ops.scijava.org/IntrospectingOps.html#op-signatures
Info Treeshttps://ops.scijava.org/IntrospectingOps.html#info-trees
Op Historyhttps://ops.scijava.org/IntrospectingOps.html#op-history
Richardson-Lucy Total Variation Deconvolutionhttps://ops.scijava.org/examples/deconvolution.html
RLTV parameter descriptionshttps://ops.scijava.org/examples/deconvolution.html#rltv-parameter-descriptions
FLIM Analysishttps://ops.scijava.org/examples/flim_analysis.html
Basic analysishttps://ops.scijava.org/examples/flim_analysis.html#basic-analysis
Adding Calibration and Scale Barshttps://ops.scijava.org/examples/flim_analysis.html#adding-calibration-and-scale-bars
Subsampling Within ROIshttps://ops.scijava.org/examples/flim_analysis.html#subsampling-within-rois
Gaussian Blur Subtractionhttps://ops.scijava.org/examples/gaussian_subtraction.html
3D Analysis and Visualizationhttps://ops.scijava.org/examples/mesh_viz.html
Fast Non-Local Means Denoise with OpenCVhttps://ops.scijava.org/examples/opencv_denoise.html
Denoise parameter descriptionshttps://ops.scijava.org/examples/opencv_denoise.html#denoise-parameter-descriptions
Spatially Adaptive Colocalization Analysishttps://ops.scijava.org/examples/saca.html
SciJava Ops from Pythonhttps://ops.scijava.org/examples/scyjava.html
Volumetric Labeling and 3D Geometry Analysishttps://ops.scijava.org/examples/volume_labeling.html
Using SciJava Ops to segment 3D punctahttps://ops.scijava.org/examples/volume_labeling.html#using-scijava-ops-to-segment-3d-puncta
Script parameter descriptionshttps://ops.scijava.org/examples/volume_labeling.html#script-parameter-descriptions
Labeling output and result tableshttps://ops.scijava.org/examples/volume_labeling.html#labeling-output-and-result-tables
Writing Your Own Op Packagehttps://ops.scijava.org/WritingYourOwnOpPackage.html
Best Practiceshttps://ops.scijava.org/WritingYourOwnOpPackage.html#best-practices
Writing Ops in Javahttps://ops.scijava.org/WritingYourOwnOpPackage.html#writing-ops-in-java
Parameter Conversion for Developershttps://ops.scijava.org/ParameterConversion.html
Basicshttps://ops.scijava.org/ParameterConversion.html#basics
An example Functionhttps://ops.scijava.org/ParameterConversion.html#an-example-function
An engine.convert Ophttps://ops.scijava.org/ParameterConversion.html#an-engine-convert-op
Adding efficiencyhttps://ops.scijava.org/ParameterConversion.html#adding-efficiency
Converting Function outputshttps://ops.scijava.org/ParameterConversion.html#converting-function-outputs
Converting Computer and Inplace outputshttps://ops.scijava.org/ParameterConversion.html#converting-computer-and-inplace-outputs
Summaryhttps://ops.scijava.org/ParameterConversion.html#summary
Migrating Ops Written for ImageJ Opshttps://ops.scijava.org/MigratingFromImageJOps.html
Upgrading pom-scijavahttps://ops.scijava.org/MigratingFromImageJOps.html#upgrading-pom-scijava
Removing all the boilerplatehttps://ops.scijava.org/MigratingFromImageJOps.html#removing-all-the-boilerplate
Implementing the right functional interfacehttps://ops.scijava.org/MigratingFromImageJOps.html#implementing-the-right-functional-interface
The Example Op, configured for SciJava Opshttps://ops.scijava.org/MigratingFromImageJOps.html#the-example-op-configured-for-scijava-ops
SciJava Ops Benchmarkshttps://ops.scijava.org/Benchmarks.html
Hardware and Softwarehttps://ops.scijava.org/Benchmarks.html#hardware-and-software
Op Matchinghttps://ops.scijava.org/Benchmarks.html#op-matching
Framework Comparisonhttps://ops.scijava.org/Benchmarks.html#framework-comparison
Reproducing these Resultshttps://ops.scijava.org/Benchmarks.html#reproducing-these-results
SciJava Ops: An Improved Algorithms Framework for Fiji and Beyondhttps://ops.scijava.org/paper-2024/index.html
Python (scyjava)https://ops.scijava.org/paper-2024/index.html#python-scyjava
Fluorescence Lifetime Image Analysishttps://ops.scijava.org/paper-2024/index.html#fluorescence-lifetime-image-analysis
Spatially Adapted Colocalization Analysishttps://ops.scijava.org/paper-2024/index.html#spatially-adapted-colocalization-analysis
Deconvolutionhttps://ops.scijava.org/paper-2024/index.html#deconvolution
https://ops.scijava.org#indices-and-tables
Search Pagehttps://ops.scijava.org/search.html
Next https://ops.scijava.org/Purpose.html
Sphinxhttps://www.sphinx-doc.org/
themehttps://github.com/readthedocs/sphinx_rtd_theme
Read the Docshttps://readthedocs.org

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