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Title: mschilli

Open Graph Title: mschilli

Description: Marcel Schilling | Senior Bioinformatician

Open Graph Description: Marcel Schilling | Senior Bioinformatician

Tel number
+34 934 021 499

Mail addresses
mschilling@ub.edu

Opengraph URL: https://mschilli.com/

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None2024-11-24 17:50:49 +0100 CET
theme-nameacademia-hugo
authorMarcel Schilling
theme-colorhsl(339, 90%, 68%)
twitter:cardsummary_large_image
og:site_namemschilli
og:imagehttps://mschilli.com/img/logos/mschilli.svg
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og:updated_time2025-11-27T09:00:00+00:00

Links:

https://mschilli.com
https://mschilli.com/
Abouthttps://mschilli.com/#about
Experiencehttps://mschilli.com/#experience
Publicationshttps://mschilli.com/#featured
Presentationshttps://mschilli.com/#presentations
Contacthttps://mschilli.com/#contact
https://mschilli.com
https://mschilli.com
About mehttps://mschilli.com/authors/mschilli/
Contact mehttps://mschilli.com/#contact
https://mschilli.com/#contact
https://orcid.org/0000-0002-3453-7792
https://www.linkedin.com/in/mschilli
https://www.researcherid.com/rid/O-3169-2013
https://github.com/mschilli87
https://gitlab.com/mschilli
https://codeberg.org/mschilli
https://bsky.app/profile/mschilli.com
https://stackexchange.com/users/2854763
Francesc Cebrià lab | Department of Genetics, Microbiology and Statistics | Biology Faculty | University of Barcelona http://www.ub.edu/planariabcn/francesc-cebria-lab
Bioinformaticshttps://www.mi.fu-berlin.de/en/bioinf
BSchttps://www.mi.fu-berlin.de/en/bioinf/stud/bachelor
MSchttps://www.mi.fu-berlin.de/en/bioinf/stud/master
Freie Universität Berlin (FU Berlin)https://fu-berlin.de/en
research assistanthttps://www.molgen.mpg.de/156350
Max Planck Institute for Molecular Genetics (MPI MolGen)https://www.molgen.mpg.de/2168/en
MSchttps://www.mi.fu-berlin.de/en/bioinf/stud/master
N. Rajewsky labhttps://www.mdc-berlin.de/n-rajewsky
Berlin Institute for Medical Systems Biology (BIMSB)https://www.mdc-berlin.de/bimsb
MDChttps://www.mdc-berlin.de
method to recover miRNA-target interactions from sRNA-seq data based on chimeric readshttps://doi.org/10.1016/j.molcel.2014.03.049
experience in the developing field of circular RNAshttps://doi.org/10.1016/j.cell.2019.05.010
3-dimensional physical model of the C. elegans gonadhttps://www.cell.com/cms/10.1016/j.devcel.2018.10.005/attachment/f0b9412c-7603-493f-9e0e-174e6de2be18/mmc7.mp4
computational pipeline to map spatially resolved RNA-seq data onto ithttps://www.cell.com/developmental-cell/fulltext/S1534-5807%2818%2930826-8#sec-4
virtual in-situ hybridization assayshttps://shiny.mdc-berlin.de/spacegerm/
investigate post-transcriptional regulation throughout the germline development from stem cells to mature oocyteshttps://doi.org/10.1016/j.devcel.2018.10.005
differential expression in Alzheimer’s patients brainshttps://doi.org/10.1038/s41398-022-02108-4
Lübeck Interdisciplinary Platform for Genome Analytics (LIGA)https://www.liga.uni-luebeck.de
Universität zu Lübeck (UzL)https://www.uni-luebeck.de/en
Gene Regulation of Cell Identity grouphttps://p-cmrc.cat/research/plass-group
P-CMR[C]https://p-cmrc.cat
IDIBELLhttps://idibell.cat/en
Francesc Cebrià Labhttp://www.ub.edu/planariabcn/francesc-cebria-lab
University of Barcelona (UB)https://web.ub.edu/en/
UBhttp://www.ub.edu/planariabcn/francesc-cebria-lab
P-CMR[C] | IDIBELLhttps://p-cmrc.cat/research/plass-group/
LIGA | UKSHhttps://www.liga.uni-luebeck.de
BIMSB | MDChttps://www.mdc-berlin.de/n-rajewsky
FU Berlinhttps://www.fu-berlin.de/sites/mentoring/
MPI MolGenhttps://www.molgen.mpg.de/156350
Studienkreis GmbHhttps://www.studienkreis.de/
Bioethical Aspects of Biomedical Researchhttps://www.bioeticayderecho.ub.edu/en/customised-training
Bioethics and Law Observatory Universitat de Barcelonahttps://www.bioeticayderecho.ub.edu/en
See certificate https://mschilli.com/certs/bioethics_ub_mschilli.pdf
Alzheimer’s Association Conference Travel Fellowshiphttps://aaic.alz.org/abstracts/conference-fellowships.asp
Alzheimer’s Associationhttps://www.alz.org
MINT Excellence - Science Excellencehttps://mlp-financify.de/mlp-stipendienprogramm/
Manfred-Lautenschläger-Stiftunghttps://www.manfred-lautenschlaeger-stiftung.de
See certificate https://mschilli.com/certs/mint_science_excellence.pdf
Berlin Gymnast Association (BTFB)https://www.btfb.de
ORCiDhttps://orcid.org/0000-0002-3453-7792#works
https://mschilli.com/publication/romero-moya2025/
CRISPR-engineered human GATA2 deficiency model uncovers mitotic dysfunction and premature aging in HSPCs, impairing hematopoietic fitnesshttps://mschilli.com/publication/romero-moya2025/
Damia Romero-Moyahttps://mschilli.com/authors/damia-romero-moya/
Eric Torralba-Saleshttps://mschilli.com/authors/eric-torralba-sales/
Cristina Calvohttps://mschilli.com/authors/cristina-calvo/
Oskar Marin-Bejarhttps://mschilli.com/authors/oskar-marin-bejar/
Maria Magallon-Mosellahttps://mschilli.com/authors/maria-magallon-mosella/
Maximiliano Distefanohttps://mschilli.com/authors/maximiliano-distefano/
Joan Perahttps://mschilli.com/authors/joan-pera/
Julio Castañohttps://mschilli.com/authors/julio-castano/
Francesca De Giorgiohttps://mschilli.com/authors/francesca-de-giorgio/
Jessica Gonzalezhttps://mschilli.com/authors/jessica-gonzalez/
Arnau Iglesiashttps://mschilli.com/authors/arnau-iglesias/
Clara Berenguer-Balaguerhttps://mschilli.com/authors/clara-berenguer-balaguer/
Marcel Schillinghttps://mschilli.com/authors/mschilli/
Mireya Plasshttps://mschilli.com/authors/mireya-plass/
Lorenzo Pasqualihttps://mschilli.com/authors/lorenzo-pasquali/
Albert Catalàhttps://mschilli.com/authors/albert-catala/
Oscar Molinahttps://mschilli.com/authors/oscar-molina/
Marcin W. Wlodarskihttps://mschilli.com/authors/marcin-w.-wlodarski/
Anna Bigashttps://mschilli.com/authors/anna-bigas/
Alessandra Giorgettihttps://mschilli.com/authors/alessandra-giorgetti/
Romero-Moya et al. Leukemiahttps://doi.org/10.1038/s41375-025-02771-8
PDF https://www.nature.com/articles/s41375-025-02771-8.pdf
DOI https://doi.org/10.1038/s41375-025-02771-8
Suppl. Text https://static-content.springer.com/esm/art%3A10.1038%2Fs41375-025-02771-8/MediaObjects/41375_2025_2771_MOESM5_ESM.docx
Suppl. Fig. 1 https://static-content.springer.com/esm/art%3A10.1038%2Fs41375-025-02771-8/MediaObjects/41375_2025_2771_MOESM1_ESM.pdf
Suppl. Fig. 2 https://static-content.springer.com/esm/art%3A10.1038%2Fs41375-025-02771-8/MediaObjects/41375_2025_2771_MOESM2_ESM.pdf
Suppl. Fig. 3 https://static-content.springer.com/esm/art%3A10.1038%2Fs41375-025-02771-8/MediaObjects/41375_2025_2771_MOESM3_ESM.pdf
Suppl. Fig. 4 https://static-content.springer.com/esm/art%3A10.1038%2Fs41375-025-02771-8/MediaObjects/41375_2025_2771_MOESM4_ESM.pdf
Suppl. Tab. 1 https://static-content.springer.com/esm/art%3A10.1038%2Fs41375-025-02771-8/MediaObjects/41375_2025_2771_MOESM6_ESM.xlsx
Suppl. Tab. 2 https://static-content.springer.com/esm/art%3A10.1038%2Fs41375-025-02771-8/MediaObjects/41375_2025_2771_MOESM7_ESM.pdf
Suppl. Tab. 3 https://static-content.springer.com/esm/art%3A10.1038%2Fs41375-025-02771-8/MediaObjects/41375_2025_2771_MOESM8_ESM.pdf
Press Release (IDIBELL) https://web.archive.org/web/20251129080744/https://idibell.cat/en/2025/11/genetic-events-that-could-trigger-leukaemia-in-patients-with-a-rare-genetic-disorder-deciphered/
https://mschilli.com/publication/ake2025/
Quantification of transcript isoforms at the single-cell level using SCALPELhttps://mschilli.com/publication/ake2025/
Franz Akehttps://mschilli.com/authors/franz-ake/
Marcel Schillinghttps://mschilli.com/authors/mschilli/
Sandra M. Fernández-Moyahttps://mschilli.com/authors/sandra-m.-fernandez-moya/
Akshay Jaya Ganeshhttps://mschilli.com/authors/akshay-jaya-ganesh/
Ana Gutiérrez-Francohttps://mschilli.com/authors/ana-gutierrez-franco/
Lei Lihttps://mschilli.com/authors/lei-li/
Mireya Plasshttps://mschilli.com/authors/mireya-plass/
Ake et al. Nature Communhttps://doi.org/10.1038/s41467-025-61118-0
SCALPELhttps://github.com/plasslab/SCALPEL
PDF https://www.nature.com/articles/s41467-025-61118-0.pdf
Code https://github.com/plasslab/SCALPEL
Dataset https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE268222
DOI https://doi.org/10.1038/s41467-025-61118-0
Preprint https://mschilli.com/publication/ake2024
Suppl. Information https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-61118-0/MediaObjects/41467_2025_61118_MOESM1_ESM.pdf
Figshare Project https://figshare.com/projects/Quantification_of_transcript_isoforms_at_the_single-cell_level_using_SCALPEL/249509
Bluesky Thread https://bsky.app/profile/mireyaplass.bsky.social/post/3ltw6pc3ii227
Press Release (UB) https://web.archive.org/web/20250906165151/https://web.ub.edu/en/web/actualitat/w/scalpe-gene-expression
Press Release (IDIBELL) https://web.archive.org/web/20250907082017/https://idibell.cat/en/2025/07/scalpel-analyzing-gene-expression-in-high-resolution/
https://mschilli.com/publication/aslam2025/
Identification of lncRNAs differentially expressed in Alzheimer’s disease brains using RNA sequencinghttps://mschilli.com/publication/aslam2025/
M. Muaaz Aslamhttps://mschilli.com/authors/m.-muaaz-aslam/
Marcel Schillinghttps://mschilli.com/authors/mschilli/
Valerija Dobricichttps://mschilli.com/authors/valerija-dobricic/
Janina Fußhttps://mschilli.com/authors/janina-fu%C3%9F/
Sören Franzenburghttps://mschilli.com/authors/soren-franzenburg/
Christina M. Lillhttps://mschilli.com/authors/christina-m.-lill/
Laura Parkkinenhttps://mschilli.com/authors/laura-parkkinen/
Lars Bertramhttps://mschilli.com/authors/lars-bertram/
Aslam et al. medRxivhttps://doi.org/10.1101/2025.03.31.25324765
PDF https://www.medrxiv.org/content/10.1101/2025.03.31.25324765v1.full.pdf
DOI https://doi.org/10.1101/2025.03.31.25324765
Suppl. Tables https://www.medrxiv.org/content/medrxiv/early/2025/04/01/2025.03.31.25324765/DC1/embed/media-1.xlsx
https://mschilli.com/publication/dobricic2022/
Differential microRNA expression analyses across two brain regions in Alzheimer's diseasehttps://mschilli.com/publication/dobricic2022/
Valerija Dobricichttps://mschilli.com/authors/valerija-dobricic/
Marcel Schillinghttps://mschilli.com/authors/mschilli/
Jessica Schulzhttps://mschilli.com/authors/jessica-schulz/
Ling-Shuang Zhuhttps://mschilli.com/authors/ling-shuang-zhu/
Chao-Wen Zhouhttps://mschilli.com/authors/chao-wen-zhou/
Janina Fußhttps://mschilli.com/authors/janina-fu%C3%9F/
Sören Franzenburghttps://mschilli.com/authors/soren-franzenburg/
Ling-Qiang Zhuhttps://mschilli.com/authors/ling-qiang-zhu/
Laura Parkkinenhttps://mschilli.com/authors/laura-parkkinen/
Christina M. Lillhttps://mschilli.com/authors/christina-m.-lill/
Lars Bertramhttps://mschilli.com/authors/lars-bertram/
Dobricic and Schilling et al. Transl Psychiatryhttps://doi.org/10.1038/s41398-022-02108-4
PDF https://www.nature.com/articles/s41398-022-02108-4.pdf
DOI https://doi.org/10.1038/s41398-022-02108-4
Preprint https://mschilli.com/publication/dobricic2022pre
Suppl. Material https://static-content.springer.com/esm/art%3A10.1038%2Fs41398-022-02108-4/MediaObjects/41398_2022_2108_MOESM1_ESM.docx
PubMed https://pubmed.ncbi.nlm.nih.gov/36038535
WOS https://www.webofscience.com/wos/woscc/full-record/WOS:000847345200002
https://mschilli.com/talk/202511_regenbell/
Cell type proportion and gene expression perturbations in cbp-3 RNAi in S. mediterraneahttps://mschilli.com/talk/202511_regenbell/
Marcel Schillinghttps://mschilli.com/authors/mschilli/
Anna Guixeras Fontanahttps://mschilli.com/authors/anna-guixeras-fontana/
Sophie Peronhttps://mschilli.com/authors/sophie-peron/
Maria Rossellóhttps://mschilli.com/authors/maria-rossello/
Josep F. Abrilhttps://mschilli.com/authors/josep-f.-abril/
Jordi Solanahttps://mschilli.com/authors/jordi-solana/
M. Dolores Molinahttps://mschilli.com/authors/m.-dolores-molina/
Francesc Cebriàhttps://mschilli.com/authors/francesc-cebria/
RegenBell symposiumhttps://regenbellsymposium.idibell.cat
conference program https://web.archive.org/web/20251128192702/https://regenbellsymposium.idibell.cat/program/
abstract book https://mschilli.com/abstract_books/202511_regenbell.pdf
https://mschilli.com/talk/202412_jornades_bioinf_genomica/
Realistic scRNA-read simulation at isoform resolution using scr⁴eamhttps://mschilli.com/talk/202412_jornades_bioinf_genomica/
Marcel Schillinghttps://mschilli.com/authors/mschilli/
Franz Akehttps://mschilli.com/authors/franz-ake/
Mireya Plasshttps://mschilli.com/authors/mireya-plass/
Jornades de Bioinformàtica i Genòmicahttps://scb.iec.cat/xii-jornades-de-bioinformatica-i-genomica
scr⁴eamhttps://github.com/plasslab/scr4eam
conference program https://mschilli.com/programs/202412_jornades_bioinf_genomica.pdf
certificate https://mschilli.com/certs/202412_jornades_bioinf_genomica.pdf
https://mschilli.com/talk/202411_regenbell/
Single-cell transcriptomics reveal broad alterations in RNA processing in iPSC-derived neurons and glial cells from Alzheimer's Disease patientshttps://mschilli.com/talk/202411_regenbell/
Marcel Schillinghttps://mschilli.com/authors/mschilli/
Ana Gutiérrez-Francohttps://mschilli.com/authors/ana-gutierrez-franco/
María Vareahttps://mschilli.com/authors/maria-varea/
Franz Akehttps://mschilli.com/authors/franz-ake/
Hui Chenhttps://mschilli.com/authors/hui-chen/
Loris Mularonihttps://mschilli.com/authors/loris-mularoni/
Lei Lihttps://mschilli.com/authors/lei-li/
Mireya Plasshttps://mschilli.com/authors/mireya-plass/
RegenBell symposiumhttps://regenbellsymposium.idibell.cat
conference program https://web.archive.org/web/20240723092543/https://regenbellsymposium.idibell.cat/program/
poster abstracts https://mschilli.com/abstract_books/202411_regenbell.pdf
certificate https://mschilli.com/certs/202411_regenbell.pdf
https://mschilli.com/talk/202405_isco/
Post-transcriptional regulation in iPSC derived neural and glial cells from Alzheimer disease patientshttps://mschilli.com/talk/202405_isco/
Marcel Schillinghttps://mschilli.com/authors/mschilli/
Ana Gutiérrez-Francohttps://mschilli.com/authors/ana-gutierrez-franco/
Franz Akehttps://mschilli.com/authors/franz-ake/
Natalie Chaves Cayuelahttps://mschilli.com/authors/natalie-chaves-cayuela/
Nadia Jamshaidhttps://mschilli.com/authors/nadia-jamshaid/
Loris Mularonihttps://mschilli.com/authors/loris-mularoni/
Mireya Plasshttps://mschilli.com/authors/mireya-plass/
ISCOhttps://isco-conference.eu
conference program https://mschilli.com/programs/202405_isco.pdf
certificate https://mschilli.com/certs/202405_isco.pdf
https://mschilli.com/talk/202312_jornades_bioinf_genomica/
Post-transcriptional regulation in iPSC derived neural and glial cells from Alzheimer disease patientshttps://mschilli.com/talk/202312_jornades_bioinf_genomica/
Marcel Schillinghttps://mschilli.com/authors/mschilli/
Ana Gutiérrez-Francohttps://mschilli.com/authors/ana-gutierrez-franco/
Franz Akehttps://mschilli.com/authors/franz-ake/
Natalie Chaves Cayuelahttps://mschilli.com/authors/natalie-chaves-cayuela/
Nadia Jamshaidhttps://mschilli.com/authors/nadia-jamshaid/
Loris Mularonihttps://mschilli.com/authors/loris-mularoni/
Mireya Plasshttps://mschilli.com/authors/mireya-plass/
Jornades de Bioinformàtica i Genòmicahttps://scb.iec.cat/xi-jornades-de-bioinformatica-i-genomica
conference program https://mschilli.com/programs/202312_jornades_bioinf_genomica.pdf
abstract book https://mschilli.com/abstract_books/202312_jornades_bioinf_genomica.pdf
certificate https://mschilli.com/certs/202312_jornades_bioinf_genomica.pdf
See all talks https://mschilli.com/talk/
Gethugothemeshttps://gethugothemes.com
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