René's URL Explorer Experiment


Title: Introduction to the microbiome R package

Mail addresses
microbiome-devel@googlegroups.com

Generator: pandoc

direct link

Domain: microbiome.github.io

NoneIE=EDGE
authorLeo Lahti, Sudarshan Shetty et al.

Links:

https://travis-ci.org/microbiome/microbiome
https://gitter.im/microbiome/microbiome?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge
https://codecov.io/github/microbiome/microbiome?branch=master
phyloseqhttp://joey711.github.io/phyloseq/import-data
Bioconductorhttps://bioconductor.org/packages/devel/bioc/html/microbiome.html
Overview (vignette)https://bioconductor.org/packages/devel/bioc/vignettes/microbiome/inst/doc/vignette.html
Installationhttps://microbiome.github.io/Installation.html
Example datahttps://microbiome.github.io/Data.html
Data operationshttps://microbiome.github.io/Preprocessing.html
Cleaning taxonomy tablehttps://microbiome.github.io/cleaning_taxonomy_table.html
Alpha diversityhttps://microbiome.github.io/Alphadiversity.html
Beta diversity / Community heterogeneityhttps://microbiome.github.io/Betadiversity.html
Community compositionhttps://microbiome.github.io/Composition.html
Core microbiotahttps://microbiome.github.io/Core.html
Shared core with venn diagramhttps://microbiome.github.io/core_venn.html
Dirichlet Multinomial Mixtures (DMM) for community typinghttps://microbiome.github.io/DMM.html
Dissimilarity-Overlap Analysis (DOC)https://microbiome.github.io/DOC.html
Landscapeshttps://microbiome.github.io/Landscaping.html
Stability and tipping elementshttps://microbiome.github.io/Stability.html
Heatmapshttps://microbiome.github.io/Heatmap.html
Ordinationhttps://microbiome.github.io/Ordination.html
Regressionhttps://microbiome.github.io/Regression.html
Generating output files/figureshttps://microbiome.github.io/Output.html
Association analysishttps://microbiome.github.io/Heatmap.html
Bimodalityhttps://microbiome.github.io/Bimodality.html
Community comparisonshttps://microbiome.github.io/Comparisons.html
limmahttps://microbiome.github.io/limma.html
PERMANOVAhttps://microbiome.github.io/PERMANOVA.html
mixed modelshttps://microbiome.github.io/Mixedmodels.html
negative binomialhttps://microbiome.github.io/Negativebinomial.html
Analysis of gut microbiota in 1006 western adultshttps://microbiome.github.io/Tutorial.html
Univariate tests for two-group comparisonhttps://microbiome.github.io/all.html
Cleaning taxonomy tablehttps://microbiome.github.io/cleaning_taxonomy_table.html
Shared core with Venn diagramhttps://microbiome.github.io/core_venn.html
welcomehttps://microbiome.github.io/Contributing.html
Two-clause FreeBSD licensehttp://en.wikipedia.org/wiki/BSD_licenses
Github pagehttps://github.com/microbiome/microbiome/
Issue Trackerhttps://github.com/microbiome/microbiome/issues
Pull requestshttps://github.com/microbiome/microbiome/
mailing listhttps://groups.google.com/forum/#!forum/microbiome-devel
Star us on the Github pagehttps://github.com/microbiome/microbiome
tutorialshttp://microbiome.github.io/tutorials/
index.pagehttps://github.com/microbiome/tutorials
et al.https://github.com/microbiome/microbiome/graphs/contributors
http://microbiome.github.com/microbiomehttp://microbiome.github.com/microbiome

Viewport: width=device-width, initial-scale=1

URLs of crawlers that visited me.