Title: Dataset - ChEA Transcription Factor Targets
Description: Search for genes and functional terms extracted and organized from over a hundred publicly available resources.
Keywords:
Domain: maayanlab.cloud
{"@context":"http://schema.org","@type":"Dataset","description":"Target genes of transcription factors from published ChIP-chip, ChIP-seq, and other transcription factor binding site profiling studies","keywords":"genomics","name":"ChEA Transcription Factor Targets","provider":{"@type":"Organization","name":"Harmonizome"},"creator":{"@type":"Organization","name":"Ma'ayan Laboratory of Computational Systems Biology","url":"https://labs.icahn.mssm.edu/maayanlab/"},"sourceOrganization":{"@type":"Organization","name":"Ma'ayan Laboratory of Computational Systems Biology","url":"https://labs.icahn.mssm.edu/maayanlab/"},"distribution":[{"@type":"DataDownload","name":"gene-attribute matrix","description":"matrix with genes labeling the rows and attributes labeling the columns, reporting positive [+1], negative [-1] (if applicable), and unobserved or non-significant [0] associations","contentUrl":"https://maayanlab.cloud/static/hdfs/harmonizome/data/cheappi/gene_attribute_matrix.txt.gz"},{"@type":"DataDownload","name":"gene-attribute edge list","description":"list of (gene, attribute, value) triplets, reporting positive [+1] and negative [-1] (if applicable) associations","contentUrl":"https://maayanlab.cloud/static/hdfs/harmonizome/data/cheappi/gene_attribute_edges.txt.gz"},{"@type":"DataDownload","name":"gene set library","description":"list of gene sets, where each gene set is labelled with an attribute","contentUrl":"https://maayanlab.cloud/static/hdfs/harmonizome/data/cheappi/gene_set_library_crisp.gmt.gz"},{"@type":"DataDownload","name":"attribute set library","description":"list of attribute sets, where each attribute set is labelled with a gene","contentUrl":"https://maayanlab.cloud/static/hdfs/harmonizome/data/cheappi/attribute_set_library_crisp.gmt.gz"},{"@type":"DataDownload","name":"gene list","description":"list of genes in the processed dataset","contentUrl":"https://maayanlab.cloud/static/hdfs/harmonizome/data/cheappi/gene_list_terms.txt.gz"},{"@type":"DataDownload","name":"attribute list","description":"list of attributes in the processed dataset","contentUrl":"https://maayanlab.cloud/static/hdfs/harmonizome/data/cheappi/attribute_list_entries.txt.gz"},{"@type":"DataDownload","name":"gene similarity matrix","description":"matrix with genes labeling the rows and columns, reporting cosine similarity of attribute associations for pairs of genes","contentUrl":"https://maayanlab.cloud/static/hdfs/harmonizome/data/cheappi/gene_similarity_matrix_cosine.txt.gz"},{"@type":"DataDownload","name":"attribute similarity matrix","description":"matrix with attributes labeling the rows and columns, reporting cosine similarity of gene associations for pairs of attributes","contentUrl":"https://maayanlab.cloud/static/hdfs/harmonizome/data/cheappi/attribute_similarity_matrix_cosine.txt.gz"},{"@type":"DataDownload","name":"processing scripts","description":"script(s) used to process the original dataset to obtain the files listed above","contentUrl":"https://maayanlab.cloud/static/hdfs/harmonizome/data/cheappi/processing_scripts.tar.gz"}],"citation":["Lachmann, A et al. (2010) ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments. Bioinformatics. 26:2438-44."]}
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