René's URL Explorer Experiment


Title: Mining the biomedical scientific literature

Description: Set of tools and workflow for easy and efficient text-mining of the biomedical scientific literature.

direct link

Domain: litmining.github.io

Links:

Pubget is a command-line tool to download articles from PubMed Central, extract their content and prepare it for analysis. pubget run --query "MRI[Abstract]" ./pubget_data https://neuroquery.github.io/pubget/
Labelbuddy is a desktop application for labelling text. It is a simple, easily installed local application. https://jeromedockes.github.io/labelbuddy/
Labelbuddy-annotations is a repository of annotations created with labelbuddy, on documents collected with pubget. https://litmining.github.io/labelbuddy-annotations/
pubgethttps://neuroquery.github.io/pubget/
OSFhttps://osf.io/d2qbh/
labelbuddyhttps://jeromedockes.github.io/labelbuddy/
labelbuddy-annotationshttps://litmining.github.io/labelbuddy-annotations/
pubgethttps://neuroquery.github.io/pubget/
pubextracthttps://github.com/neurodatascience/pubextract/
Pubgethttps://neuroquery.github.io/pubget/
PubMed Centralhttps://www.ncbi.nlm.nih.gov/pmc/
OSF projecthttps://osf.io/d2qbh/
Labelbuddyhttps://jeromedockes.github.io/labelbuddy/
labelbuddy-annotationshttps://litmining.github.io/labelbuddy-annotations/
Pubgethttps://neuroquery.github.io/pubget/
pubextracthttps://github.com/neurodatascience/pubextract/
PubMed Centralhttps://www.ncbi.nlm.nih.gov/pmc/
documentationhttps://neuroquery.github.io/pubget/
Labelbuddyhttps://jeromedockes.github.io/labelbuddy/
documentationhttps://jeromedockes.github.io/labelbuddy/labelbuddy/current/documentation/
repositoryhttps://litmining.github.io/labelbuddy-annotations/
documentationhttps://litmining.github.io/labelbuddy-annotations/contributing_to_this_repository.html
PubMed Centralhttps://www.ncbi.nlm.nih.gov/pmc/
“Advanced”https://www.ncbi.nlm.nih.gov/pmc/advanced
documentationhttps://neuroquery.github.io/pubget/
OSFhttps://osf.io/
documentationhttps://jeromedockes.github.io/labelbuddy/labelbuddy/current/documentation/
repositoryhttps://litmining.github.io/labelbuddy-annotations/
documentationhttps://litmining.github.io/labelbuddy-annotations/contributing_to_this_repository.html
using the repositoryhttps://litmining.github.io/labelbuddy-annotations/using_this_repository.html

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URLs of crawlers that visited me.