| Statistics Department | https://statistics.stanford.edu/ |
| Wu Tsai Neurosciences Institute | https://neuroscience.stanford.edu/ |
| Research | https://lindermanlab.github.io/#research |
| Group | https://lindermanlab.github.io/#group |
| Teaching | https://lindermanlab.github.io/#teaching |
| Publications | https://lindermanlab.github.io/#publications |
| Code | https://github.com/lindermanlab |
| Linderman et al., 2017 | https://lindermanlab.github.io/#linderman2017recurrent |
| Hu et al., 2024 | https://lindermanlab.github.io/#hu2024modeling |
| Linderman et al., 2017 | https://lindermanlab.github.io/#linderman2017recurrent |
| Hu et al., 2024 | https://lindermanlab.github.io/#hu2024modeling |
| Weinreb et al., 2024 | https://lindermanlab.github.io/#weinreb2024keypoint |
| Nair et al., 2023 | https://lindermanlab.github.io/#nair2023approximate |
| Vinograd et al., 2024 | https://lindermanlab.github.io/#vinograd2024intrinsic |
| Markowitz et al., 2023 | https://lindermanlab.github.io/#markowitz2023spontaneous |
| Bedbrook et al., 2025 | https://lindermanlab.github.io/#bedbrook2026lifelong |
| SSM | https://github.com/lindermanlab/ssm |
| Dynamax | https://probml.github.io/dynamax/ |
| Linderman et al., 2025 | https://lindermanlab.github.io/#linderman2025dynamax |
| Smith et al., 2023 | https://lindermanlab.github.io/#smith2023simplified |
| Smith et al., 2023a | https://lindermanlab.github.io/#smith2023simplified |
| b | https://lindermanlab.github.io/#smith2023convolutional |
| Gonzalez et al., 2024 | https://lindermanlab.github.io/#gonzalez2024towards |
| 2025 | https://lindermanlab.github.io/#gonzalez2025predictability |
| 2026 | https://lindermanlab.github.io/#gonzalez2026unifying |
| Narayan et al., 2025 | https://lindermanlab.github.io/#narayan2025minions |
| He et al., 2026 | https://lindermanlab.github.io/#he2026information |
| Zhao et al., 2025 | https://lindermanlab.github.io/#zhao2025informed |
| Zhao and Linderman, 2023 | https://lindermanlab.github.io/#zhao2023revisiting |
| Hu and Smith et al., 2025 | https://lindermanlab.github.io/#hu2025sing |
| Smith et al., 2026 | https://lindermanlab.github.io/#smith2026closing |
| Zoltowski et al., 2025 | https://lindermanlab.github.io/#zoltowski2025parallelizing |
| Naesseth et al., 2018 | https://lindermanlab.github.io/#naesseth2018variational |
| Lawson et al., 2022 | https://lindermanlab.github.io/#lawson2022sixo |
| 2023 | https://lindermanlab.github.io/#lawson2023nasx |
| Williams et al., 2020 | https://lindermanlab.github.io/#williams2020point |
| Wang et al., 2023 | https://lindermanlab.github.io/#wang2023spatiotemporal |
| Linderman and Adams, 2014 | https://lindermanlab.github.io/#linderman2014discovering |
| Zhao and Linderman, 2023 | https://lindermanlab.github.io/#zhao2023revisiting |
| https://lindermanlab.github.io/images/scott_2019.jpg |
| Statistics | https://statistics.stanford.edu/ |
| Wu Tsai Neurosciences Institute | https://neuroscience.stanford.edu/ |
| Computer Science | https://cs.stanford.edu/ |
| Stanford Bio-X | https://biox.stanford.edu/ |
| Stanford AI Lab | https://ai.stanford.edu/ |
| Liam Paninski | http://www.stat.columbia.edu/~liam/ |
| David Blei | http://www.cs.columbia.edu/~blei/ |
| Ryan Adams | http://www.cs.princeton.edu/~rpa/ |
| Leslie Valiant | http://people.seas.harvard.edu/~valiant/ |
| CV | https://lindermanlab.github.io/cv/cv.pdf |
| Google Scholar | https://scholar.google.com/citations?user=6mD3I24AAAAJ&hl=en |
| https://smithhenryd.github.io/ |
| Kanha Batra | https://smithhenryd.github.io/ |
| https://www.ekbuchanan.com/ |
| Kelly Buchanan | https://www.ekbuchanan.com/ |
| https://www.linkedin.com/in/cole-citrenbaum-26b18820a/ |
| Cole Citrenbaum | https://www.linkedin.com/in/cole-citrenbaum-26b18820a/ |
| https://www.linkedin.com/in/noah-cowan/ |
| Noah Cowan | https://www.linkedin.com/in/noah-cowan/ |
| https://aditijha7.com/ |
| Aditi Jha | https://aditijha7.com/ |
| https://www.linkedin.com/in/yiqi-jiang-aa1363173/ |
| Yiqi Jiang | https://www.linkedin.com/in/yiqi-jiang-aa1363173/ |
| https://www.linkedin.com/in/etaash-katiyar-77108818b/ |
| Etaash Katiyar | https://www.linkedin.com/in/etaash-katiyar-77108818b/ |
| https://www.linkedin.com/in/hannahlee-neuro/ |
| Hannah Lee | https://www.linkedin.com/in/hannahlee-neuro/ |
| https://www.linkedin.com/in/hyundongleee |
| Hyun Dong Lee | https://www.linkedin.com/in/hyundongleee |
| https://alisalevin.github.io/ |
| Alisa Levin | https://alisalevin.github.io/ |
| https://www.linkedin.com/in/joshua-lunger-586703238/ |
| Josh Lunger | https://www.linkedin.com/in/joshua-lunger-586703238/ |
| https://jakubsmekal.com/ |
| Jakub Smékal | https://jakubsmekal.com/ |
| https://smithhenryd.github.io/ |
| Henry Smith | https://smithhenryd.github.io/ |
| https://www.linkedin.com/in/ian-c-tanoh/en |
| Ian Christopher Tanoh | https://www.linkedin.com/in/ian-c-tanoh/en |
| https://scholar.google.com/citations?user=tpguLYkAAAAJ&hl=en |
| Skyler Wu | https://scholar.google.com/citations?user=tpguLYkAAAAJ&hl=en |
| https://nicolaszucchet.github.io/ |
| Nicolas Zucchet | https://nicolaszucchet.github.io/ |
| Ben Antin | https://www.benjaminantin.com/ |
| Shaunak Bhandarkar | https://www.linkedin.com/in/shaunak-bhandarkar-879160229/ |
| Dan Biderman | https://dan-biderman.netlify.app/ |
| Engram Lab | https://engram.com/ |
| Julia Costacurta | https://jcostacurta11.github.io/ |
| Lea Duncker | https://leaduncker.github.io/ |
| Elizabeth DuPre | https://elizabeth-dupre.com/ |
| Xavier Gonzalez | https://xaviergonzalez.github.io/ |
| Amber Hu | https://www.linkedin.com/in/amber-hu-aa6765147 |
| Maxwell Kounga | https://www.linkedin.com/in/maxwell-kounga-2037061b6/ |
| Dieterich Lawson | http://di.eteri.ch |
| Sophia Lu | https://www.linkedin.com/in/sophia-lu-083891127/ |
| Matthew MacKay | https://lindermanlab.github.io/ |
| Aditya Nair | https://www.nairlab.science/ |
| Blue Sheffer | https://www.linkedin.com/in/blue-sheffer-51730a71/ |
| Jimmy Smith | https://jimmysmith1919.github.io/ |
| Andy Warrington | https://github.com/andrewwarrington |
| Alex Williams | http://neurostatslab.org/ |
| Libby Zhang | https://scholar.google.com/citations?user=Q5dMYt8AAAAJ&hl=en |
| Yixiu Zhao | https://lindermanlab.github.io/ |
| David Zoltowski | https://www.davidzoltowski.com/ |
| https://slinderman.github.io/ml4nd/ |
| https://slinderman.github.io/ml4nd | https://slinderman.github.io/ml4nd/ |
| https://slinderman.github.io/stats305b/ |
| https://slinderman.github.io/stats305b | https://slinderman.github.io/stats305b/ |
| https://slinderman.github.io/stats305c/ |
| https://slinderman.github.io/stats305c | https://slinderman.github.io/stats305c/ |
| arXiv | https://arxiv.org/abs/2606.16138 |
| Paper | https://openreview.net/forum?id=4hoiRJsmpp |
| Paper | https://openreview.net/forum?id=fw6GgAIGur |
| arXiv | https://arxiv.org/abs/2509.21716 |
| Code | https://github.com/lindermanlab/parallelizing_with_lds |
| Paper | https://www.science.org/doi/10.1126/science.aea9795 |
| bioRxiv | https://www.biorxiv.org/content/early/2025/11/24/2025.11.21.688112 |
| bioRxiv | https://www.biorxiv.org/content/early/2026/03/10/2026.03.07.710319 |
| Code | https://github.com/lindermanlab/smds |
| Paper | https://openreview.net/pdf?id=w3bMXPMDW1 |
| arXiv | https://arxiv.org/abs/2502.08695 |
| Code | https://github.com/rwl93/bnp4ood |
| Paper | https://www.sciencedirect.com/science/article/pii/S0896627325008943 |
| Paper | https://openreview.net/forum?id=Lp1noMpMUG |
| arXiv | https://arxiv.org/abs/2511.21740 |
| Paper | https://openreview.net/forum?id=isFHz8qf20 |
| arXiv | https://arxiv.org/abs/2512.21720 |
| bioRxiv | https://www.biorxiv.org/content/early/2026/01/14/2026.01.12.699110 |
| Paper | https://www.cell.com/neuron/fulltext/S0896-6273(25)00850-5 |
| PsyArXiv | https://osf.io/preprints/psyarxiv/x2tj9_v1 |
| bioRxiv | https://www.biorxiv.org/content/early/2025/08/01/2025.07.31.667987 |
| Paper | https://www.sciencedirect.com/science/article/pii/S089662732500515X |
| bioRxiv | https://www.biorxiv.org/content/10.1101/2023.09.05.556267v1 |
| Paper | https://openreview.net/forum?id=1si0Vq4O91 |
| arXiv | https://arxiv.org/abs/2506.20233 |
| Code | https://github.com/ianctanoh/eap-fit-hh/ |
| arXiv | https://arxiv.org/abs/2508.16817 |
| arXiv | https://arxiv.org/abs/2506.17796 |
| Code | https://github.com/lindermanlab/sing |
| arXiv | https://arxiv.org/abs/2508.18413 |
| Code | https://github.com/lindermanlab/parallel-mcmc |
| arXiv | https://arxiv.org/abs/2506.18203 |
| Paper | https://openreview.net/forum?id=uvTea5Rfek |
| bioRxiv | https://www.biorxiv.org/content/10.1101/2025.11.11.686428v1.full |
| Code | https://github.com/schnitzer-lab/CANDY-public |
| arXiv | https://arxiv.org/abs/2407.21243 |
| arXiv | https://arxiv.org/abs/2502.15964 |
| Code | https://github.com/HazyResearch/minions |
| bioRxiv | https://www.biorxiv.org/content/10.1101/2025.02.07.637062v1 |
| Paper | https://joss.theoj.org/papers/10.21105/joss.07069 |
| Code | https://github.com/probml/dynamax |
| Paper | https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1013291 |
| bioRxiv | https://www.biorxiv.org/content/10.1101/2024.07.30.605869v2 |
| Code | https://github.com/robinvloeberghs/hMFC |
| arXiv | https://arxiv.org/abs/2412.17227 |
| bioRxiv | https://www.biorxiv.org/content/10.1101/2024.08.26.609746v1 |
| bioRxiv | https://www.biorxiv.org/content/early/2024/08/03/2024.08.02.606282 |
| Paper | https://www.nature.com/articles/s41586-024-07915-x |
| bioRxiv | https://www.biorxiv.org/content/early/2024/05/22/2024.05.21.595051.1 |
| Paper | https://www.sciencedirect.com/science/article/pii/S0092867424009061 |
| Paper | https://www.nature.com/articles/s41586-024-07916-w |
| bioRxiv | https://www.biorxiv.org/content/10.1101/2023.05.22.541741v1 |
| Paper | https://openreview.net/forum?id=x4Kchcq2du |
| arXiv | https://arxiv.org/abs/2408.03330 |
| Paper | https://openreview.net/forum?id=HbIBqn3grD |
| bioRxiv | https://www.biorxiv.org/content/10.1101/2024.07.26.605315v1 |
| Paper | https://openreview.net/forum?id=hBCxxVQDBw |
| arXiv | http://arxiv.org/abs/2407.19115 |
| Paper | https://www.nature.com/articles/s41593-024-01705-4 |
| Paper | https://www.nature.com/articles/s41592-024-02318-2 |
| bioRxiv | https://www.biorxiv.org/content/10.1101/2023.03.16.532307v1 |
| Code | https://github.com/dattalab/keypoint-moseq |
| arXiv | https://arxiv.org/abs/2407.07279 |
| arXiv | https://arxiv.org/abs/2310.19694 |
| Code | https://github.com/NVlabs/ConvSSM |
| arXiv | https://arxiv.org/abs/2308.14864 |
| Code | http://sixo.ai/ |
| arXiv | https://arxiv.org/abs/2306.03291 |
| Code | https://github.com/lindermanlab/salt |
| bioRxiv | https://www.biorxiv.org/content/early/2023/04/07/2023.04.04.535512 |
| Paper | https://www.tandfonline.com/doi/full/10.1080/01621459.2023.2257896 |
| arXiv | https://arxiv.org/abs/2201.05044 |
| Code | https://github.com/lindermanlab/NeymanScottProcesses.jl |
| Paper | http://proceedings.mlr.press/v202/zhao23c/zhao23c.pdf |
| arXiv | https://arxiv.org/abs/2305.16543 |
| Code | https://github.com/lindermanlab/SVAE-Revisited |
| Paper | https://openreview.net/forum?id=Ai8Hw3AXqks |
| arXiv | https://arxiv.org/abs/2208.04933 |
| Code | https://github.com/lindermanlab/S5 |
| Paper | https://www.nature.com/articles/s41586-022-05611-2 |
| Paper | https://www.sciencedirect.com/science/article/pii/S0092867422014714 |
| bioRxiv | https://www.biorxiv.org/content/10.1101/2022.04.19.488776v1 |
| Paper | https://openreview.net/forum?id=bDyLgfvZ0qJ |
| arXiv | https://arxiv.org/abs/2206.05952 |
| Code | https://github.com/lindermanlab/sixo |
| Paper | https://openreview.net/forum?id=6Kj1wCgiUp_ |
| bioRxiv | https://www.biorxiv.org/content/10.1101/2022.06.10.495690v2 |
| Paper | https://escholarship.org/content/qt7gk617ss/qt7gk617ss.pdf |
| arXiv | https://psyarxiv.com/h2r8d |
| Paper | https://www.pnas.org/doi/pdf/10.1073/pnas.2113961119 |
| bioRxiv | https://www.biorxiv.org/content/10.1101/2021.05.13.444094v2 |
| Paper | https://www.nature.com/articles/s42254-022-00430-w |
| Paper | https://www.cell.com/neuron/fulltext/S0896-6273(22)00106-4 |
| Code | https://lindermanlab.github.io/hackathons/#swr |
| Paper | https://www.sciencedirect.com/science/article/pii/S0959438821001203 |
| arXiv | https://arxiv.org/abs/2103.05075 |
| Paper | https://papers.nips.cc/paper/2021/hash/8b77b4b5156dc11dec152c6c71481565-Abstract.html |
| arXiv | https://arxiv.org/abs/2111.01256 |
| Code | https://github.com/jimmysmith1919/JSLDS_public |
| Paper | https://papers.nips.cc/paper/2021/hash/252a3dbaeb32e7690242ad3b556e626b-Abstract.html |
| arXiv | https://arxiv.org/abs/2110.14739 |
| Code | https://github.com/ahwillia/netrep |
| Paper | https://elifesciences.org/articles/66410 |
| arXiv | https://arxiv.org/abs/2101.08211 |
| Paper | https://www.sciencedirect.com/science/article/pii/S0896627321005043 |
| bioRxiv | https://www.biorxiv.org/content/early/2020/10/07/2020.10.05.326942.full.pdf |
| Paper | http://proceedings.mlr.press/v130/zhang21h.html |
| arXiv | https://arxiv.org/abs/2011.07365 |
| Paper | https://papers.nips.cc/paper/2020/hash/a5481cd6d7517aa3fc6476dc7d9019ab-Abstract.html |
| arXiv | https://arxiv.org/abs/2010.04875 |
| Code | https://github.com/lindermanlab/PPSeq.jl |
| Paper | https://papers.nips.cc/paper/2020/hash/aa1f5f73327ba40d47ebce155e785aaf-Abstract.html |
| bioRxiv | https://www.biorxiv.org/content/10.1101/2020.10.21.349282v1 |
| Code | https://github.com/lindermanlab/ssm/blob/master/notebooks/Multi-Population-rSLDS.ipynb |
| Paper | https://academic.oup.com/biostatistics/advance-article-abstract/doi/10.1093/biostatistics/kxaa047/6071379 |
| arXiv | https://arxiv.org/abs/1812.05691 |
| Paper | http://proceedings.mlr.press/v119/zoltowski20a.html |
| arXiv | https://arxiv.org/abs/2001.04571 |
| Code | https://github.com/davidzoltowski/ssmdm |
| Paper | https://www.sciencedirect.com/science/article/abs/pii/S0960982219314654 |
| bioRxiv | https://www.biorxiv.org/content/10.1101/672246v1 |
| Paper | https://papers.nips.cc/paper/9206-scalable-bayesian-inference-of-dendritic-voltage-via-spatiotemporal-recurrent-state-space-models |
| Code | https://github.com/SunRuoxi/Voltage_Smoothing_with_rSLDS |
| Paper | https://papers.nips.cc/paper/8755-mutually-regressive-point-processes |
| Code | https://github.com/ifiaposto/Mutually-Regressive-Point-Processes |
| Paper | https://papers.nips.cc/paper/8366-poisson-randomized-gamma-dynamical-systems |
| arXiv | https://arxiv.org/abs/1910.12991 |
| Code | https://github.com/aschein/prgds |
| Paper | https://papers.nips.cc/paper/9701-behavenet-nonlinear-embedding-and-bayesian-neural-decoding-of-behavioral-videos |
| Code | https://github.com/ebatty/behavenet |
| bioRxiv | https://www.biorxiv.org/content/early/2019/04/29/621540.full.pdf |
| Paper | https://openreview.net/forum?id=HkzRQhR9YX |
| arXiv | https://arxiv.org/abs/1811.12386 |
| Paper | https://papers.nips.cc/paper/8289-point-process-latent-variable-models-of-larval-zebrafish-behavior |
| Code | https://github.com/as4529/pplvm |
| Paper | https://www.cell.com/cell/fulltext/S0092-8674(18)30512-9 |
| Paper | https://openreview.net/forum?id=Byt3oJ-0W |
| Code | https://github.com/google/gumbel_sinkhorn |
| Paper | http://proceedings.mlr.press/v84/linderman18a/linderman18a.pdf |
| arXiv | https://arxiv.org/abs/1710.09508 |
| Paper | http://proceedings.mlr.press/v84/naesseth18a/naesseth18a.pdf |
| arXiv | https://arxiv.org/abs/1705.11140 |
| Paper | https://docs.google.com/viewer?a=v&pid=sites&srcid=ZGVmYXVsdGRvbWFpbnx3d25pcDIwMTd8Z3g6NzI5M2EyMTZjZDEzZTE2Mw |
| Paper | https://docs.google.com/viewer?a=v&pid=sites&srcid=ZGVmYXVsdGRvbWFpbnx3d25pcDIwMTd8Z3g6NDEyYmY3MWE5OGEyMWU3Yg |
| Paper | https://ieeexplore.ieee.org/abstract/document/8313132/ |
| Paper | http://www.tandfonline.com/doi/full/10.1080/01621459.2017.1388244 |
| Code | https://github.com/blei-lab/factorial-network-models |
| Paper | http://www.sciencedirect.com/science/article/pii/S0959438816302641?via%3Dihub |
| bioRxiv | http://www.biorxiv.org/content/early/2017/01/31/104737 |
| Code | https://github.com/slinderman/tdlds |
| Paper | http://proceedings.mlr.press/v54/linderman17a/linderman17a.pdf |
| Slides | https://www.dropbox.com/s/jsj95lp2rxpdk4h/broad-04-12-17.pdf |
| Talk | https://www.youtube.com/watch?v=5RA-TMwdpbw&list=PLlMMtlgw6qNjROoMNTBQjAcdx53kV50cS |
| Code | https://github.com/slinderman/recurrent-slds |
| Paper | http://proceedings.mlr.press/v54/naesseth17a/naesseth17a.pdf |
| Blog Post | https://casmls.github.io/general/2017/04/25/rsvi.html |
| Code | https://github.com/blei-lab/ars-reparameterization |
| Paper | http://ieeexplore.ieee.org/document/7738867/ |
| Code | https://github.com/slinderman/pyhsmm_spiketrains |
| Paper | http://jmlr.org/papers/v17/15-431.html |
| Paper | https://papers.nips.cc/paper/6185-bayesian-latent-structure-discovery-from-multi-neuron-recordings.pdf |
| Code | https://github.com/slinderman/pyglm |
| Thesis | https://dash.harvard.edu/handle/1/33493391 |
| Code | https://github.com/slinderman/thesis |
| Paper | http://www.sciencedirect.com/science/article/pii/S0165027016000418 |
| Code | https://github.com/slinderman/pyhsmm_spiketrains |
| Paper | http://papers.nips.cc/paper/5660-dependent-multinomial-models-made-easy-stick-breaking-with-the-polya-gamma-augmentation |
| arXiv | http://arxiv.org/abs/1506.05843 |
| Code | https://github.com/hips/pgmult |
| arXiv | https://arxiv.org/abs/1507.03228 |
| Code | https://github.com/slinderman/pyhawkes |
| Paper | http://papers.nips.cc/paper/5274-a-framework-for-studying-synaptic-plasticity-with-neural-spike-train-data |
| arXiv | http://arxiv.org/abs/1411.4077 |
| Paper | https://cbmm.mit.edu/publications/abstracts-2014-brains-minds-and-machines-summer-school |
| Paper | https://proceedings.mlr.press/v32/linderman14.html |
| arXiv | http://arxiv.org/abs/1402.0914 |
| Talk | http://techtalks.tv/talks/discovering-latent-network-structure-in-point-process-data/60859/ |
| Code | https://github.com/slinderman/pyhawkes |
| Paper | http://www.abstractsonline.com/Plan/ViewAbstract.aspx?sKey=08eeb24b-e182-4bb9-abc7-14e25e2b17a0&cKey=9cda1734-c886-4ce5-811a-b062bd7b414b&mKey=%7b54C85D94-6D69-4B09-AFAA-502C0E680CA7%7d |
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