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Title: Exploring and Analyzing LC-MS data with Spectra and xcms • xcmsTutorials

Open Graph Title: Exploring and Analyzing LC-MS data with Spectra and xcms

Description: This resource contains examples and tutorials for the analysis of LC-MS data using the *MsExperiment*, *Spectra* and *xcms* packages. Various examples show data handling, representation, visualization and analysis of LC-MS data with these packages. A special emphasis is given on the definition of various data set-specific parameters for analysis algorithms of the *xcms* package.

Open Graph Description: This resource contains examples and tutorials for the analysis of LC-MS data using the *MsExperiment*, *Spectra* and *xcms* packages. Various examples show data handling, representation, visualization and analysis of LC-MS data with these packages. A special emphasis is given on the definition of various data set-specific parameters for analysis algorithms of the *xcms* package.

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Domain: jorainer.github.io

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og:imagehttps://jorainer.github.io/xcmsTutorials/logo.png

Links:

Skip to contentshttps://jorainer.github.io/xcmsTutorials#main
xcmsTutorialshttps://jorainer.github.io/index.html
Referencehttps://jorainer.github.io/reference/index.html
Exploring and Analyzing LC-MS Data with Spectra and xcmshttps://jorainer.github.io/articles/xcms-preprocessing.html
Changeloghttps://jorainer.github.io/news/index.html
https://github.com/jorainer/xcmsTutorials/
https://jorainer.github.io/xcmsTutorials#exploring-and-analyzing-lc-ms-data-with-spectra-and-xcms
https://creativecommons.org/licenses/by-nc/4.0/
https://hub.docker.com/repository/docker/jorainer/xcms_tutorials
https://zenodo.org/doi/10.5281/zenodo.11185520
MsExperimenthttps://github.com/RforMassSpectrometry/MsExperiment
Spectrahttps://github.com/RforMassSpectrometry/Spectra
xcmshttps://github.com/sneumann/xcms
xcms-preprocessing.Rmdhttps://jorainer.github.io/vignettes/xcms-preprocessing.Rmd
xcms-preprocessing.htmlhttps://jorainer.github.io/xcmsTutorials/xcms-preprocessing.html
https://jorainer.github.io/xcmsTutorials#citation
Zenodohttps://zenodo.org
https://doi.org/10.5281/zenodo.11185521https://doi.org/10.5281/zenodo.11185521
10.1021/acs.analchem.5c04338https://doi.org/10.1021/acs.analchem.5c04338
https://jorainer.github.io/xcmsTutorials#installation
dockerhttps://www.docker.com/
herehttps://docs.docker.com/desktop/
docker imagehttps://hub.docker.com/r/jorainer/xcms_tutorials
install.packageshttps://rdrr.io/r/utils/install.packages.html
installhttps://bioconductor.github.io/BiocManager/reference/install.html
https://jorainer.github.io/xcmsTutorials#contribution
RforMassSpectrometry contributions guidelinehttps://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html#contributions
https://jorainer.github.io/xcmsTutorials#code-of-conduct
RforMassSpectrometry Code of Conducthttps://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html#code-of-conduct
https://jorainer.github.io/xcmsTutorials#additional-documentation-resources-and-tutorials
https://jorainer.github.io/SpectraTutorials/https://jorainer.github.io/SpectraTutorials/
https://rformassspectrometry.github.io/MsCoreUtils/https://rformassspectrometry.github.io/MsCoreUtils/
https://rformassspectrometry.github.io/MetaboCoreUtils/https://rformassspectrometry.github.io/MetaboCoreUtils/
https://rformassspectrometry.github.io/Spectra/https://rformassspectrometry.github.io/Spectra/
https://rformassspectrometry.github.io/MetaboAnnotation/https://rformassspectrometry.github.io/MetaboAnnotation/
https://rformassspectrometry.github.io/CompoundDb/https://rformassspectrometry.github.io/CompoundDb/
https://jorainer.github.io/xcmsTutorials#acknowledgments
Philippine Louailhttps://github.com/philouail
Browse source codehttps://github.com/jorainer/xcmsTutorials/
Report a bughttps://github.com/jorainer/xcmsTutorials/issues/new
Artistic-2.0https://www.r-project.org/Licenses/Artistic-2.0
Citing xcmsTutorialshttps://jorainer.github.io/authors.html#citation
https://orcid.org/0000-0002-6977-7147
More about authors...https://jorainer.github.io/authors.html
pkgdownhttps://pkgdown.r-lib.org/

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