Title: Joanna I. Sulkowska — Interdisciplinary Laboratory of Biological Systems Modelling
Description: Interdisciplinary Laboratory of Biological Systems Modelling — Centre of New Technologies, University of Warsaw.
Mail addresses
j.sulkowska@cent.uw.edu.pl
Domain: ilbsm.github.io
| author | Joanna I. Sulkowska |
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Links:
| Home | https://ilbsm.github.io/ |
| Group | https://ilbsm.github.io/group/ |
| Research | https://ilbsm.github.io/research/ |
| Collaboration | https://ilbsm.github.io/collaboration/ |
| Projects & Software | https://ilbsm.github.io/topics/ |
| Publications | https://ilbsm.github.io/publications/ |
| Media | https://ilbsm.github.io/media/ |
| Contact | https://ilbsm.github.io/contact/ |
| 01 Protein Folding & Energy Landscapes How knotted proteins fold and move. | https://ilbsm.github.io/research/#topic-folding |
| 02 Complex Topology: Knots, Lassos & Links Molecular entanglements in proteins and RNA. | https://ilbsm.github.io/research/#topic-math |
| 03 Drug Design & Therapeutics Topology-guided targeting of proteins. | https://ilbsm.github.io/research/#topic-drug-design |
| 04 Structural Bioinformatics & Databases Open tools for structural analysis. | https://ilbsm.github.io/research/#topic-bioinformatics |
| 1 Genomics-aided structure predictionPNAS 2012 Sulkowska, Morcos, Weigt, Hwa, Onuchic 251 cit. | https://doi.org/10.1073/pnas.1207864109 |
| 2 Conservation of complex knotting and slipknotting patterns in proteinsPNAS 2012 Sulkowska, Rawdon, Millett, Onuchic, Stasiak 244 cit. | https://doi.org/10.1073/pnas.1205918109 |
| 3 KnotProt: a database of proteins with knots and slipknotsNAR 2014 Jamróz, Niemyska, Rawdon et al. 203 cit. | https://doi.org/10.1093/nar/gku1059 |
| 4 Dodging the crisis of folding proteins with knotsPNAS 2009 Sulkowska, Sulkowski, Onuchic 177 cit. | https://doi.org/10.1073/pnas.0811147106 |
| 5 Stabilizing effect of knots on proteinsPNAS 2008 Sulkowska, Sulkowski, Szymczak, Cieplak 149 cit. | https://doi.org/10.1073/pnas.0805468105 |
| 2026 NSF - NCEMS National Synthesis Center for Emergence in the Molecular and Cellular Sciences | https://cent.uw.edu.pl/the-national-synthesis-center-for-emergence-in-the-molecular-and-cellular-sciences-grant-awarded-to-joanna-sulkowska/ |
| 2024 EMBO - Advanced Collaboration EMBO Advanced Collaboration Grant | https://cent.uw.edu.pl/prof-joanna-sulkowska-has-been-awarded-an-embo-advanced-collaboration-grant/ |
| 2024 AIM - SQuaRE AIM SQuaRE Grant - American Institute of Mathematics | https://ilbsm.github.io/news/aim-square-grant-caltech-2024/ |
| 2023 IDUB - University of Warsaw IDUB Grant - Design of Artificial Proteins | https://ilbsm.github.io/news/joanna-sulkowska-idub-artificial-proteins-2023/ |
| AlphaKnot 2.0 Knotting analysis of AlphaFold models at proteome scale | http://alphaknot.cent.uw.edu.pl |
| KnotProt 2.0 Database of knotted & slipknotted proteins from PDB | http://knotprot.cent.uw.edu.pl |
| AlphaLasso Lasso motifs in AlphaFold structures — server & database | http://alphalasso.cent.uw.edu.pl |
| LassoProt Lasso topology protein database classified by piercing number | http://lassoprot.cent.uw.edu.pl |
| Topoly Python package for polymer topology calculation | http://topoly.cent.uw.edu.pl |
| Genus Genus characteristics for biomolecules via Seifert surfaces | https://genus.fuw.edu.pl/ |
| LinkProt Protein links database — covalently linked protein chains | http://linkprot.cent.uw.edu.pl |
| PyLasso Lasso topology identification — PyMOL plugin & web tool | http://pylasso.cent.uw.edu.pl |
| IIMCB Prof. Janusz Bujnicki International Institute of Molecular and Cell Biology, Warsaw · RNA structure prediction · comparative genomics · protein engineering | https://genesilico.pl |
| Rice Prof. Jose Onuchic Rice University, Houston, USA · Energy landscape theory · protein folding · AWSEM coarse-grained models | https://ctbp.rice.edu/senior-scientist/jose-onuchic |
| Sorbonne Prof. Martin Weigt Sorbonne University / UPMC, Paris, France · DCA methods · protein coevolution · statistical inference · sequence analysis | http://www.lcqb.upmc.fr/users/weigt |
| St T Prof. Eric Rawdon University of St. Thomas, Saint Paul, USA · Knot theory in proteins · knotted curves in space · topology of open chains | https://cas.stthomas.edu/departments/faculty/eric-rawdon/ |
| + University of Ljubljana & more All international collaborations | https://ilbsm.github.io/collaboration/ |
| 23 Feb 2026 NSF NCEMS Working Group Grant awarded to Joanna Sulkowska | https://ilbsm.github.io/news/nsf-ncems-grant-2026/ |
| 23 May 2025 Protein DICES - we invite you June 10-11, 2025! | https://ilbsm.github.io/news/protein-dices-june-2025/ |
| 11 May 2025 Knots and Proteins Workshop in Bologna (19-20.05.2025) | https://ilbsm.github.io/news/knots-proteins-workshop-bologna-2025/ |
| 21 Nov 2024 Prof. Joanna Sulkowska awarded EMBO Advanced Collaboration Grant | https://ilbsm.github.io/news/embo-advanced-collaboration-grant-2024/ |
| 19 Jul 2024 Joanna Sulkowska AIM SQuaRE grant, Caltech, USA | https://ilbsm.github.io/news/aim-square-grant-caltech-2024/ |
| 19 Jul 2024 Workshops for Polish Children's Fund | https://ilbsm.github.io/news/polish-childrens-fund-workshop-2024/ |
| 19 Jul 2024 Kamil Luczkiewicz Master's Degree, Faculty of Physics, UW | https://ilbsm.github.io/news/kamil-luczkiewicz-masters-degree-2024/ |
| 19 Sep 2022 Roksana Malinowska defended her Bachelor's thesis in Bioinformatics, MIM UW | https://ilbsm.github.io/news/roksana-malinowska-bachelors-2022/ |
| 16 Sep 2022 Michal Sanocki defended his Bachelor's thesis in Faculty of Chemistry, UW | https://ilbsm.github.io/news/michal-sanocki-bachelors-2022/ |
| 25 Jul 2022 Kick off meeting (25-28.07) for OPUS LAP grant | https://ilbsm.github.io/news/opus-lap-kickoff-2022/ |
| 25 Jul 2022 Lectures of Prof. Jozef Przytycki (George Washington University, USA) | https://ilbsm.github.io/news/przytycki-lectures-2022/ |
| 19 Jun 2021 22-26 June 2021: Entanglement days of biopolymers, online | https://ilbsm.github.io/news/entanglement-days-2021/ |
| 20 Dec 2018 Ministry Scholarships for Maciej Piejko and Bartosz Gren | https://ilbsm.github.io/news/ministry-scholarships-piejko-gren-2018/ |
| 21 Nov 2018 Joanna Sulkowska was promoted to associate professor at the University of Warsaw | https://ilbsm.github.io/news/sulkowska-associate-professor-2018/ |
| 20 Nov 2018 Agata Perlinska and Aleksandra Jarmolinska received Preludium grants from NCN | https://ilbsm.github.io/news/perlinska-jarmolinska-preludium-2018/ |
| 15 Oct 2018 Maciej Piejko received an award for the best presentation at YoungChem | https://ilbsm.github.io/news/piejko-youngchem-2018/ |
| 10 Oct 2018 Joanna Sulkowska is one of the winners of the 2018 National Science Centre Award | https://ilbsm.github.io/news/sulkowska-nsc-award-2018/ |
| 18 Jun 2018 Start of the workshop for the Polish Children's Fund | https://ilbsm.github.io/news/childrens-fund-workshop-2018/ |
| 14 Apr 2018 Dni Otwarte Kampusu Ochota - warsztaty dla dzieci | https://ilbsm.github.io/news/dni-otwarte-2018/ |
| 29 Mar 2018 Jeff Noel from AG Daumke Max Delbruck Center, Berlin visits our laboratory | https://ilbsm.github.io/news/jeff-noel-visit-2018/ |
| 14 Mar 2018 Joanna Sulkowska is the Person of the Year in MocArty Challenge | https://ilbsm.github.io/news/sulkowska-person-of-year-2018/ |
| 8 Mar 2018 Katarzyna Tych from Technische Universitat Muenchen visits our laboratory | https://ilbsm.github.io/news/katarzyna-tych-visit-2018/ |
| 10 Jan 2018 Perlinska and Jarmolinska received support from the College of Inter-Faculty Individual Studies | https://ilbsm.github.io/news/perlinska-jarmolinska-college-support-2018/ |
| 14 Dec 2017 Ministry Scholarships for Aleksandra Gierut and Pawel Dabrowski-Tumanski | https://ilbsm.github.io/news/ministry-scholarships-gierut-dabrowski-2017/ |
| 7 Oct 2017 Jarmolinska and Perlinska awarded for best posters at Coarse Graining Workshop | https://ilbsm.github.io/news/jarmolinska-perlinska-posters-2017/ |
| 29 Sep 2017 Aleksandra Jarmolinska won best talk at X Symposium of the PTBI | https://ilbsm.github.io/news/jarmolinska-ptbi-talk-2017/ |
| 27 Sep 2017 Mobilnosc PLUS grant for Pawel Dabrowski-Tumanski | https://ilbsm.github.io/news/dabrowski-mobilnosc-plus-2017/ |
| 20 Sep 2017 Aleksandra Gierut defended her Bachelor's thesis on Jagiellonian University in Cracow | https://ilbsm.github.io/news/gierut-bachelors-2017/ |
| 26 Jul 2017 Etiuda grant for Pawel Dabrowski-Tumanski | https://ilbsm.github.io/news/dabrowski-etiuda-2017/ |
| 25 Jul 2017 New computational grant on Okeanos | https://ilbsm.github.io/news/okeanos-grant-2017/ |
| 24 Jul 2017 Wiktoria Domagala starts an internship | https://ilbsm.github.io/news/domagala-internship-2017/ |
| 12 Jul 2017 Jacek Kedzierski defended his Bachelor's thesis at Faculty of Chemistry, UW | https://ilbsm.github.io/news/kedzierski-bachelors-2017/ |
| 19 Jun 2017 Polish Children's Fund - start of the workshop | https://ilbsm.github.io/news/childrens-fund-2017/ |
| 16 May 2017 START stipend for Pawel Dabrowski-Tumanski | https://ilbsm.github.io/news/dabrowski-start-stipend-2017/ |
| 8 Apr 2017 Workshop for children on Ochota Campus Open Days | https://ilbsm.github.io/news/ochota-workshop-2017/ |
| 26 Mar 2017 Joanna Sulkowska talked about her scientific career in TVN | https://ilbsm.github.io/news/sulkowska-tvn-2017/ |
| 3 Mar 2017 Vasilina Zayats joined the group at CeNT, UW | https://ilbsm.github.io/news/zayats-joined-2017/ |
| 3 Mar 2017 Rafal Jakubowski joined the group at CeNT, UW | https://ilbsm.github.io/news/jakubowski-joined-2017/ |
| 16 Jan 2017 EMBO Small Grant awarded for Joanna Sulkowska | https://ilbsm.github.io/news/embo-small-grant-2017/ |
| 12 Jan 2017 MISMaP UW traineeship for Joanna Macnar and Jacek Kedzierski | https://ilbsm.github.io/news/mismaps-traineeship-2017/ |
| 6 Jan 2017 Mgr Gaja Klaudel joined the group at CeNT, UW | https://ilbsm.github.io/news/klaudel-joined-2017/ |
| 15 Dec 2016 Minister of Science and Higher Education Scholarship for Joanna Macnar | https://ilbsm.github.io/news/macnar-ministry-scholarship-2016/ |
| 8 Dec 2016 Joanna Sulkowska talked about her scientific career in Radio Zet | https://ilbsm.github.io/news/sulkowska-radio-zet-2016/ |
| 24 Nov 2016 Joanna Sulkowska awarded L'Oreal-UNESCO For Women in Science habilitation scholarship | https://ilbsm.github.io/news/loreal-unesco-habilitation-2016/ |
| 15 Nov 2016 NCN Preludium grant for Pawel Dabrowski-Tumanski | https://ilbsm.github.io/news/preludium-dabrowski-2016/ |
| 30 Sep 2016 Wanda Niemyska chosen to give a talk at ICTP Workshop, Trieste | https://ilbsm.github.io/news/niemyska-ictp-2016/ |
| 29 Sep 2016 Award for Agata Perlinska for best MSc. thesis in bioinformatics in 2015 | https://ilbsm.github.io/news/perlinska-best-thesis-award-2016/ |
| 29 Sep 2016 Best poster award to Aleksandra Jarmolinska at 9th Symposium of PTBI, Bialystok | https://ilbsm.github.io/news/jarmolinska-poster-award-2016/ |
| 10 Sep 2016 EMBO Networking grant to Joanna Sulkowska to support the 2nd Congress Bio | https://ilbsm.github.io/news/embo-networking-congress-bio-2016/ |
| 15 Aug 2016 Pawel Dabrowski-Tumanski internship at University of Lausanne (Prof. Stasiak) | https://ilbsm.github.io/news/dabrowski-lausanne-internship-2016/ |
| 12 Aug 2016 Aleksandra Jarmolinska at the XXXI Olympic Games in Rio de Janeiro | https://ilbsm.github.io/news/jarmolinska-rio-2016/ |
| 20 Jul 2016 Pawel Dabrowski-Tumanski chosen to give a talk at Knots in Hellas, Ancient Olympia | https://ilbsm.github.io/news/dabrowski-knots-in-hellas-2016/ |
| 18 Jul 2016 Young researchers grant DSM for Pawel Dabrowski-Tumanski | https://ilbsm.github.io/news/dabrowski-dsm-grant-2016/ |
| 22 Jun 2016 EMBO networking support for 6th Visegrad Symposium on Structural Systems Biology | https://ilbsm.github.io/news/embo-visegrad-2016/ |
| 22 Jun 2016 Grant Early Science, ICM UW | https://ilbsm.github.io/news/early-science-grant-2016/ |
| 22 Jun 2016 Joanna Sulkowska nominated for AcademiaNet: Profiles of Leading Women Scientists | https://ilbsm.github.io/news/academianet-nomination-2016/ |
| 22 May 2016 Master's thesis of Agata Perlinska was nominated for an award | https://ilbsm.github.io/news/perlinska-thesis-nomination-2016/ |
| 22 May 2016 Rector (US) award for Wanda Niemyska | https://ilbsm.github.io/news/niemyska-rector-award-2016/ |
| 8 Apr 2016 8-10 April 2016: EMBO Workshop in Jablonna | https://ilbsm.github.io/news/embo-workshop-jablonna-2016/ |
| 6 Apr 2016 First prize for best talk and best slides for Pawel Dabrowski at EMBO workshop | https://ilbsm.github.io/news/dabrowski-embo-prize-2016/ |
| 5 Apr 2016 Internship in UCSB for Wanda Niemyska | https://ilbsm.github.io/news/niemyska-ucsb-internship-2016/ |
| 1 Apr 2016 Idea Plus grant to Joanna Sulkowska | https://ilbsm.github.io/news/idea-plus-grant-2016/ |
| 3 Mar 2016 EMBO networking support for Young Scientist Workshop on Computational Biology 2 | https://ilbsm.github.io/news/embo-young-scientist-workshop-2016/ |
| 2 Feb 2016 BIRS events to Joanna Sulkowska | https://ilbsm.github.io/news/birs-events-2016/ |
| 2 Jan 2016 EMBO Small grant to Joanna Sulkowska | https://ilbsm.github.io/news/embo-small-grant-2016/ |
| 1 Jan 2016 Our 6th Visegrad Symposium on Structural Systems Biology | https://ilbsm.github.io/news/visegrad-symposium-2016/ |
| 22 Oct 2015 Inter grant to Wanda Niemyska | https://ilbsm.github.io/news/niemyska-inter-grant-2015/ |
| 22 Oct 2015 DSM grant to Pawel Dabrowski-Tumanski | https://ilbsm.github.io/news/dabrowski-dsm-grant-2015/ |
| 1 Oct 2015 Welcome to new Ph.D students! | https://ilbsm.github.io/news/welcome-phd-students-2015/ |
| 1 Jan 2015 Our 6th Visegrad Symposium on Structural Systems Biology (announcement) | https://ilbsm.github.io/news/visegrad-symposium-2015/ |
| Research Topics | https://ilbsm.github.io/topics/ |
| The Group | https://ilbsm.github.io/group/ |
| Collaboration | https://ilbsm.github.io/collaboration/ |
| Projects & Software | https://ilbsm.github.io/research/ |
| Publications | https://ilbsm.github.io/publications/ |
| https://www.facebook.com/SulkowskaLab/ | |
| Twitter/X | https://twitter.com/sulkowskal |
| YouTube | https://www.youtube.com/channel/UCeLQTTlftS-APrHgFL8OYEw |
| https://www.instagram.com/sulkowskalab/?hl=en | |
| GitHub | https://github.com/ilbsm |
| ResearchGate | https://www.researchgate.net/profile/Joanna-Sulkowska |
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