René's URL Explorer Experiment


Title: dada2 · GitHub Topics · GitHub

Open Graph Title: Build software better, together

X Title: GitHub

Description: GitHub is where people build software. More than 150 million people use GitHub to discover, fork, and contribute to over 420 million projects.

Open Graph Description: GitHub is where people build software. More than 150 million people use GitHub to discover, fork, and contribute to over 420 million projects.

X Description: GitHub is where people build software. More than 150 million people use GitHub to discover, fork, and contribute to over 420 million projects.

Opengraph URL: https://github.com

X: github

direct link

Domain: github.com

route-pattern/topics/:topic_name(.:format)
route-controllertopics
route-actionshow
fetch-noncev2:7bbb48d3-f41d-c174-da33-80b8e983ec82
current-catalog-service-hash78339b992060a6a11548e4f18438b88c3ea1eec1b6705962d1fd145365fa2db1
request-id9050:39E5DD:5CC8B75:8075B60:6A4BB061
html-safe-nonce1e0d9f2e42199bcf986c1c1575470a0302b2fbe265a5ba5e0140dc136acdee57
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5MDUwOjM5RTVERDo1Q0M4Qjc1OjgwNzVCNjA6NkE0QkIwNjEiLCJ2aXNpdG9yX2lkIjoiMzA2MzAzNjM0Njc2MzYzMzYxIiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmac473308173036eeb0b32fae31cee5264334823f49a461fd43556a3a90d184001b
github-keyboard-shortcutscopilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/topics/dada2
og:site_nameGitHub
og:imagehttps://github.githubassets.com/assets/github-octocat-13c86b8b336d.png
og:image:typeimage/png
og:image:width1200
og:image:height620
twitter:site:id13334762
twitter:creatorgithub
twitter:creator:id13334762
twitter:cardsummary_large_image
twitter:imagehttps://github.githubassets.com/assets/github-logo-55c5b9a1fe52.png
twitter:image:width1200
twitter:image:height1200
hostnamegithub.com
expected-hostnamegithub.com
None3ede370c1d797b0693475db9bb4298020548dcae9c98a2f071d54aaf1b4e9faa
turbo-cache-controlno-preview
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releaseaf627ba2b0ed5351c6d1b8e04fdbe893325c237f
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/topics/dada2#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Ftopics%2Fdada2
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Ftopics%2Fdada2
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2Ftopics%2Fdada2&source=header
Reloadhttps://github.com/topics/dada2
Reloadhttps://github.com/topics/dada2
Reloadhttps://github.com/topics/dada2
Explorehttps://github.com/explore
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Eventshttps://github.com/events
GitHub Sponsorshttps://github.com/sponsors/explore
Star https://github.com/login?return_to=%2Ftopic.dada2
All 61 https://github.com/topics/dada2
R 30 https://github.com/topics/dada2?l=r
HTML 9 https://github.com/topics/dada2?l=html
Shell 6 https://github.com/topics/dada2?l=shell
Python 5 https://github.com/topics/dada2?l=python
Jupyter Notebook 3 https://github.com/topics/dada2?l=jupyter+notebook
Dockerfile 1 https://github.com/topics/dada2?l=dockerfile
TeX 1 https://github.com/topics/dada2?l=tex
Most stars https://github.com/topics/dada2?o=desc&s=stars
Fewest stars https://github.com/topics/dada2?o=asc&s=stars
Most forks https://github.com/topics/dada2?o=desc&s=forks
Fewest forks https://github.com/topics/dada2?o=asc&s=forks
Recently updated https://github.com/topics/dada2?o=desc&s=updated
Least recently updated https://github.com/topics/dada2?o=asc&s=updated
cafferychen777https://github.com/cafferychen777
MicrobiomeStathttps://github.com/cafferychen777/MicrobiomeStat
Star 50 https://github.com/login?return_to=%2Fcafferychen777%2FMicrobiomeStat
Code https://github.com/cafferychen777/MicrobiomeStat
Issues https://github.com/cafferychen777/MicrobiomeStat/issues
Pull requests https://github.com/cafferychen777/MicrobiomeStat/pulls
Discussions https://github.com/cafferychen777/MicrobiomeStat/discussions
visualizationhttps://github.com/topics/visualization
statisticshttps://github.com/topics/statistics
longitudinal-datahttps://github.com/topics/longitudinal-data
microbiomehttps://github.com/topics/microbiome
omicshttps://github.com/topics/omics
metagenomeshttps://github.com/topics/metagenomes
metagenomic-analysishttps://github.com/topics/metagenomic-analysis
microbiome-analysishttps://github.com/topics/microbiome-analysis
phyloseqhttps://github.com/topics/phyloseq
dada2https://github.com/topics/dada2
omics-data-integrationhttps://github.com/topics/omics-data-integration
amplicon-sequencinghttps://github.com/topics/amplicon-sequencing
microbiome-datahttps://github.com/topics/microbiome-data
qiime2https://github.com/topics/qiime2
16s-rrnahttps://github.com/topics/16s-rrna
microbiome-workflowhttps://github.com/topics/microbiome-workflow
aomlomicshttps://github.com/aomlomics
tourmalinehttps://github.com/aomlomics/tourmaline
Star 46 https://github.com/login?return_to=%2Faomlomics%2Ftourmaline
Code https://github.com/aomlomics/tourmaline
Issues https://github.com/aomlomics/tourmaline/issues
Pull requests https://github.com/aomlomics/tourmaline/pulls
snakemakehttps://github.com/topics/snakemake
dada2https://github.com/topics/dada2
deblurhttps://github.com/topics/deblur
noaa-omics-softwarehttps://github.com/topics/noaa-omics-software
amplicon-sequence-variantshttps://github.com/topics/amplicon-sequence-variants
ycl6https://github.com/ycl6
16S-rDNA-V3-V4https://github.com/ycl6/16S-rDNA-V3-V4
Star 41 https://github.com/login?return_to=%2Fycl6%2F16S-rDNA-V3-V4
Code https://github.com/ycl6/16S-rDNA-V3-V4
Issues https://github.com/ycl6/16S-rDNA-V3-V4/issues
Pull requests https://github.com/ycl6/16S-rDNA-V3-V4/pulls
https://ycl6.github.io/16S-Demo/https://ycl6.github.io/16S-Demo/
bioinformaticshttps://github.com/topics/bioinformatics
microbiomehttps://github.com/topics/microbiome
illuminahttps://github.com/topics/illumina
16shttps://github.com/topics/16s
microbiotahttps://github.com/topics/microbiota
phyloseqhttps://github.com/topics/phyloseq
dada2https://github.com/topics/dada2
lefsehttps://github.com/topics/lefse
picrust2https://github.com/topics/picrust2
shandleyhttps://github.com/shandley
Microbiome-Analysis-Using-Rhttps://github.com/shandley/Microbiome-Analysis-Using-R
Star 28 https://github.com/login?return_to=%2Fshandley%2FMicrobiome-Analysis-Using-R
Code https://github.com/shandley/Microbiome-Analysis-Using-R
Issues https://github.com/shandley/Microbiome-Analysis-Using-R/issues
Pull requests https://github.com/shandley/Microbiome-Analysis-Using-R/pulls
teachinghttps://github.com/topics/teaching
microbiomehttps://github.com/topics/microbiome
16shttps://github.com/topics/16s
phyloseqhttps://github.com/topics/phyloseq
dada2https://github.com/topics/dada2
quadram-institute-biosciencehttps://github.com/quadram-institute-bioscience
dadaist2https://github.com/quadram-institute-bioscience/dadaist2
Star 13 https://github.com/login?return_to=%2Fquadram-institute-bioscience%2Fdadaist2
Code https://github.com/quadram-institute-bioscience/dadaist2
Issues https://github.com/quadram-institute-bioscience/dadaist2/issues
Pull requests https://github.com/quadram-institute-bioscience/dadaist2/pulls
bioinformaticshttps://github.com/topics/bioinformatics
taxonomyhttps://github.com/topics/taxonomy
metabarcodinghttps://github.com/topics/metabarcoding
16shttps://github.com/topics/16s
phyloseqhttps://github.com/topics/phyloseq
dada2https://github.com/topics/dada2
asvhttps://github.com/topics/asv
amplicon-pipelinehttps://github.com/topics/amplicon-pipeline
claraqinhttps://github.com/claraqin
neonMicrobehttps://github.com/claraqin/neonMicrobe
Star 12 https://github.com/login?return_to=%2Fclaraqin%2FneonMicrobe
Code https://github.com/claraqin/neonMicrobe
Issues https://github.com/claraqin/neonMicrobe/issues
Pull requests https://github.com/claraqin/neonMicrobe/pulls
bioinformaticshttps://github.com/topics/bioinformatics
neonhttps://github.com/topics/neon
r-packagehttps://github.com/topics/r-package
marker-geneshttps://github.com/topics/marker-genes
macroecologyhttps://github.com/topics/macroecology
biogeographyhttps://github.com/topics/biogeography
dada2https://github.com/topics/dada2
soil-microbiomehttps://github.com/topics/soil-microbiome
neonmicrobehttps://github.com/topics/neonmicrobe
microUCPHhttps://github.com/microUCPH
amplicon_data_analysishttps://github.com/microUCPH/amplicon_data_analysis
Star 12 https://github.com/login?return_to=%2FmicroUCPH%2Famplicon_data_analysis
Code https://github.com/microUCPH/amplicon_data_analysis
Issues https://github.com/microUCPH/amplicon_data_analysis/issues
Pull requests https://github.com/microUCPH/amplicon_data_analysis/pulls
statisticshttps://github.com/topics/statistics
data-analysishttps://github.com/topics/data-analysis
microbiomehttps://github.com/topics/microbiome
16shttps://github.com/topics/16s
taxonomic-classificationhttps://github.com/topics/taxonomic-classification
dada2https://github.com/topics/dada2
amplicon-data-analysishttps://github.com/topics/amplicon-data-analysis
ycl6https://github.com/ycl6
16S-Demohttps://github.com/ycl6/16S-Demo
Star 10 https://github.com/login?return_to=%2Fycl6%2F16S-Demo
Code https://github.com/ycl6/16S-Demo
Issues https://github.com/ycl6/16S-Demo/issues
Pull requests https://github.com/ycl6/16S-Demo/pulls
bioinformaticshttps://github.com/topics/bioinformatics
microbiomehttps://github.com/topics/microbiome
illuminahttps://github.com/topics/illumina
16shttps://github.com/topics/16s
microbiotahttps://github.com/topics/microbiota
phyloseqhttps://github.com/topics/phyloseq
dada2https://github.com/topics/dada2
lefsehttps://github.com/topics/lefse
picrust2https://github.com/topics/picrust2
adriaaulahttps://github.com/adriaaula
dada2_guidelineshttps://github.com/adriaaula/dada2_guidelines
Star 10 https://github.com/login?return_to=%2Fadriaaula%2Fdada2_guidelines
Code https://github.com/adriaaula/dada2_guidelines
Issues https://github.com/adriaaula/dada2_guidelines/issues
Pull requests https://github.com/adriaaula/dada2_guidelines/pulls
ampliconhttps://github.com/topics/amplicon
16shttps://github.com/topics/16s
18shttps://github.com/topics/18s
dada2https://github.com/topics/dada2
leholmanhttps://github.com/leholman
metabarTOADhttps://github.com/leholman/metabarTOAD
Star 5 https://github.com/login?return_to=%2Fleholman%2FmetabarTOAD
Code https://github.com/leholman/metabarTOAD
Issues https://github.com/leholman/metabarTOAD/issues
Pull requests https://github.com/leholman/metabarTOAD/pulls
pipelinehttps://github.com/topics/pipeline
dada2https://github.com/topics/dada2
uparsehttps://github.com/topics/uparse
RemiMaglionehttps://github.com/RemiMaglione
r-scriptshttps://github.com/RemiMaglione/r-scripts
Star 5 https://github.com/login?return_to=%2FRemiMaglione%2Fr-scripts
Code https://github.com/RemiMaglione/r-scripts
Issues https://github.com/RemiMaglione/r-scripts/issues
Pull requests https://github.com/RemiMaglione/r-scripts/pulls
ggplot2https://github.com/topics/ggplot2
rhttps://github.com/topics/r
fastahttps://github.com/topics/fasta
dada2https://github.com/topics/dada2
lefsehttps://github.com/topics/lefse
BryanAbucheryhttps://github.com/BryanAbuchery
16S-rRNA-End-to-End-Analysishttps://github.com/BryanAbuchery/16S-rRNA-End-to-End-Analysis
Star 4 https://github.com/login?return_to=%2FBryanAbuchery%2F16S-rRNA-End-to-End-Analysis
Code https://github.com/BryanAbuchery/16S-rRNA-End-to-End-Analysis
Issues https://github.com/BryanAbuchery/16S-rRNA-End-to-End-Analysis/issues
Pull requests https://github.com/BryanAbuchery/16S-rRNA-End-to-End-Analysis/pulls
dada2https://github.com/topics/dada2
fastqchttps://github.com/topics/fastqc
qiime2https://github.com/topics/qiime2
rna-analysishttps://github.com/topics/rna-analysis
mock-analysishttps://github.com/topics/mock-analysis
sebrauscherthttps://github.com/sebrauschert
OceanOmics-ampliconhttps://github.com/sebrauschert/OceanOmics-amplicon
Star 4 https://github.com/login?return_to=%2Fsebrauschert%2FOceanOmics-amplicon
Code https://github.com/sebrauschert/OceanOmics-amplicon
Issues https://github.com/sebrauschert/OceanOmics-amplicon/issues
Pull requests https://github.com/sebrauschert/OceanOmics-amplicon/pulls
bioinformaticshttps://github.com/topics/bioinformatics
bioinformatics-pipelinehttps://github.com/topics/bioinformatics-pipeline
ampliconhttps://github.com/topics/amplicon
dada2https://github.com/topics/dada2
amplicon-pipelinehttps://github.com/topics/amplicon-pipeline
Headonpillowhttps://github.com/Headonpillow
16S_analysishttps://github.com/Headonpillow/16S_analysis
Star 4 https://github.com/login?return_to=%2FHeadonpillow%2F16S_analysis
Code https://github.com/Headonpillow/16S_analysis
Issues https://github.com/Headonpillow/16S_analysis/issues
Pull requests https://github.com/Headonpillow/16S_analysis/pulls
pipelinehttps://github.com/topics/pipeline
metagenomicshttps://github.com/topics/metagenomics
illuminahttps://github.com/topics/illumina
16shttps://github.com/topics/16s
microbiotahttps://github.com/topics/microbiota
illumina-sequencinghttps://github.com/topics/illumina-sequencing
phyloseqhttps://github.com/topics/phyloseq
microbial-ecologyhttps://github.com/topics/microbial-ecology
dada2https://github.com/topics/dada2
16s-seqhttps://github.com/topics/16s-seq
jdmagasinhttps://github.com/jdmagasin
nifH-ASV-workflowhttps://github.com/jdmagasin/nifH-ASV-workflow
Star 3 https://github.com/login?return_to=%2Fjdmagasin%2FnifH-ASV-workflow
Code https://github.com/jdmagasin/nifH-ASV-workflow
Issues https://github.com/jdmagasin/nifH-ASV-workflow/issues
Pull requests https://github.com/jdmagasin/nifH-ASV-workflow/pulls
dada2https://github.com/topics/dada2
diazotrophshttps://github.com/topics/diazotrophs
marine-microbial-ecologyhttps://github.com/topics/marine-microbial-ecology
nitrogen-fixationhttps://github.com/topics/nitrogen-fixation
rec3141https://github.com/rec3141
papa2https://github.com/rec3141/papa2
Star 3 https://github.com/login?return_to=%2Frec3141%2Fpapa2
Code https://github.com/rec3141/papa2
Issues https://github.com/rec3141/papa2/issues
Pull requests https://github.com/rec3141/papa2/pulls
pythonhttps://github.com/topics/python
bioinformaticshttps://github.com/topics/bioinformatics
metagenomicshttps://github.com/topics/metagenomics
ampliconhttps://github.com/topics/amplicon
16shttps://github.com/topics/16s
denoisinghttps://github.com/topics/denoising
dada2https://github.com/topics/dada2
asvhttps://github.com/topics/asv
IMCBioinformaticshttps://github.com/IMCBioinformatics
dada2_16S_workflowhttps://github.com/IMCBioinformatics/dada2_16S_workflow
Star 3 https://github.com/login?return_to=%2FIMCBioinformatics%2Fdada2_16S_workflow
Code https://github.com/IMCBioinformatics/dada2_16S_workflow
Issues https://github.com/IMCBioinformatics/dada2_16S_workflow/issues
Pull requests https://github.com/IMCBioinformatics/dada2_16S_workflow/pulls
snakemakehttps://github.com/topics/snakemake
dada2https://github.com/topics/dada2
16s-rrnahttps://github.com/topics/16s-rrna
16srrnahttps://github.com/topics/16srrna
erictleunghttps://github.com/erictleung
dada2HPCPipehttps://github.com/erictleung/dada2HPCPipe
Sponsor https://github.com/sponsors/erictleung
Star 3 https://github.com/login?return_to=%2Ferictleung%2Fdada2HPCPipe
Code https://github.com/erictleung/dada2HPCPipe
Issues https://github.com/erictleung/dada2HPCPipe/issues
Pull requests https://github.com/erictleung/dada2HPCPipe/pulls
workflowhttps://github.com/topics/workflow
pipelinehttps://github.com/topics/pipeline
slurmhttps://github.com/topics/slurm
microbiomehttps://github.com/topics/microbiome
16shttps://github.com/topics/16s
microbiome-analysishttps://github.com/topics/microbiome-analysis
dada2https://github.com/topics/dada2
amplicon-sequencinghttps://github.com/topics/amplicon-sequencing
performance-clusterhttps://github.com/topics/performance-cluster
xuan13haohttps://github.com/xuan13hao
data_analysishttps://github.com/xuan13hao/data_analysis
Star 2 https://github.com/login?return_to=%2Fxuan13hao%2Fdata_analysis
Code https://github.com/xuan13hao/data_analysis
Issues https://github.com/xuan13hao/data_analysis/issues
Pull requests https://github.com/xuan13hao/data_analysis/pulls
visualizationhttps://github.com/topics/visualization
bioinformaticshttps://github.com/topics/bioinformatics
rna-seqhttps://github.com/topics/rna-seq
rhttps://github.com/topics/r
vcfhttps://github.com/topics/vcf
16shttps://github.com/topics/16s
boxplothttps://github.com/topics/boxplot
vcf-datahttps://github.com/topics/vcf-data
dada2https://github.com/topics/dada2
heatmap-visualizationhttps://github.com/topics/heatmap-visualization
jdmagasinhttps://github.com/jdmagasin
nifH_amplicons_DADA2https://github.com/jdmagasin/nifH_amplicons_DADA2
Star 2 https://github.com/login?return_to=%2Fjdmagasin%2FnifH_amplicons_DADA2
Code https://github.com/jdmagasin/nifH_amplicons_DADA2
Issues https://github.com/jdmagasin/nifH_amplicons_DADA2/issues
Pull requests https://github.com/jdmagasin/nifH_amplicons_DADA2/pulls
dada2https://github.com/topics/dada2
diazotrophshttps://github.com/topics/diazotrophs
marine-microbial-ecologyhttps://github.com/topics/marine-microbial-ecology
nitrogen-fixationhttps://github.com/topics/nitrogen-fixation
Curate this topic https://github.com/github/explore/tree/master/CONTRIBUTING.md?source=add-description-dada2
Learn more https://docs.github.com/en/articles/classifying-your-repository-with-topics
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.