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Title: tidyomics · GitHub

Open Graph Title: tidyomics

X Title: tidyomics

Description: Open project to create tidy analysis packages for omics data - tidyomics

Open Graph Description: Open project to create tidy analysis packages for omics data - tidyomics

X Description: Open project to create tidy analysis packages for omics data - tidyomics

Opengraph URL: https://github.com/tidyomics

X: @github

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Domain: github.com

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tidyomicshttps://github.com/tidyomics
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Please reload this pagehttps://github.com/tidyomics
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Overview https://github.com/tidyomics
Repositories https://github.com/orgs/tidyomics/repositories
Projects https://github.com/orgs/tidyomics/projects
Packages https://github.com/orgs/tidyomics/packages
People https://github.com/orgs/tidyomics/people
Overviewhttps://github.com/tidyomics
Repositorieshttps://github.com/orgs/tidyomics/repositories
Projectshttps://github.com/orgs/tidyomics/projects
Packageshttps://github.com/orgs/tidyomics/packages
Peoplehttps://github.com/orgs/tidyomics/people
README.mdhttps://github.com/tidyomics/.github/tree/main/profile/README.md
https://github.com/tidyomics#get-started
tidy datahttps://vita.had.co.nz/papers/tidy-data.pdf
tidyomics open challengeshttps://github.com/orgs/tidyomics/projects/1
belowhttps://github.com/tidyomics#get-involved
tidyversehttps://dplyr.tidyverse.org/
Bioconductorhttps://bioconductor.org
https://github.com/tidyomics#installer
https://github.com/tidyomics/tidyomicshttps://github.com/tidyomics/tidyomics
Key Tidyomics Packageshttps://github.com/tidyomics#key-tidyomics-packages
Comparison to base Rhttps://github.com/tidyomics#comparison-to-base-r
Comparison to Bioconductorhttps://github.com/tidyomics#comparison-to-bioconductor
Tutorialshttps://github.com/tidyomics#tutorials
Newshttps://github.com/tidyomics#news
Talkshttps://github.com/tidyomics#talks
Tidyomics paperhttps://github.com/tidyomics#tidyomics-paper
Getting Helphttps://github.com/tidyomics#getting-help
Get Involvedhttps://github.com/tidyomics#get-involved
https://github.com/tidyomics#key-tidyomics-packages
tidySummarizedExperimenthttps://www.bioconductor.org/packages/release/bioc/html/tidySummarizedExperiment.html
Vignettehttps://www.bioconductor.org/packages/release/bioc/vignettes/tidySummarizedExperiment/inst/doc/introduction.html
GitHubhttps://github.com/stemangiola/tidySummarizedExperiment
tidySingleCellExperimenthttps://bioconductor.org/packages//release/bioc/html/tidySingleCellExperiment.html
Vignettehttps://bioconductor.org/packages//release/bioc/vignettes/tidySingleCellExperiment/inst/doc/introduction.html
GitHubhttps://github.com/stemangiola/tidySingleCellExperiment
tidySeurathttps://cran.r-project.org/web/packages/tidyseurat/index.html
Vignettehttps://stemangiola.github.io/tidyseurat/articles/introduction.html
GitHubhttps://github.com/stemangiola/tidyseurat
tidySpatialExperimenthttps://www.bioconductor.org/packages/release/bioc/html/tidySpatialExperiment.html
Vignettehttps://william-hutchison.github.io/tidySpatialExperiment/articles/overview.html
GitHubhttps://github.com/william-hutchison/tidySpatialExperiment
tidytofhttps://bioconductor.org/packages/release/bioc/html/tidytof.html
Vignettehttps://keyes-timothy.github.io/tidytof/
GitHubhttps://github.com/keyes-timothy/tidytof
plyrangeshttps://bioconductor.org/packages/release/bioc/html/plyranges.html
Vignettehttps://tidyomics.github.io/plyranges/articles/an-introduction.html
GitHubhttps://github.com/tidyomics/plyranges
plyinteractionshttps://bioconductor.org/packages/release/bioc/html/plyinteractions.html
Vignettehttps://tidyomics.github.io/plyinteractions/articles/plyinteractions.html
GitHubhttps://github.com/tidyomics/plyinteractions
plyxphttps://www.bioconductor.org/packages/release/bioc/html/plyxp.html
Vignettehttps://jtlandis.github.io/plyxp/articles/plyxp.html
GitHubhttps://github.com/jtlandis/plyxp
DFplyrhttps://bioconductor.org/packages/DFplyr/
Vignettehttps://www.bioconductor.org/packages//release/bioc/vignettes/DFplyr/inst/doc/example_usage.html
GitHubhttps://github.com/jonocarroll/DFplyr
tidybulkhttps://www.bioconductor.org/packages/release/bioc/html/tidybulk.html
Vignettehttps://tidyomics.github.io/tidybulk/articles/introduction.html
GitHubhttps://github.com/stemangiola/tidybulk/
nullrangeshttps://www.bioconductor.org/packages/release/bioc/html/nullranges.html
Vignettehttps://nullranges.github.io/nullranges/articles/nullranges.html
GitHubhttps://github.com/nullranges/nullranges/
easylifthttps://www.bioconductor.org/packages/release/bioc/html/easylift.html
Vignettehttps://nahid18.github.io/easylift/articles/easylift.html
GitHubhttps://github.com/nahid18/easylift/
https://github.com/tidyomics#comparison-to-base-r
https://github.com/tidyomics#comparison-to-bioconductor
Gentleman et al 2004https://doi.org/10.1186/gb-2004-5-10-r80
https://github.com/tidyomics#tutorials
Tidy single-cell analyseshttps://tidyomics.github.io/tidyomicsWorkshopBioc2023/articles/tidyGenomicsTranscriptomics.html
Investigating chromatin composition and architecturehttps://jserizay.com/Bioc2024tidyworkshop/
Tidy ranges tutorialhttps://tidyomics.github.io/tidy-ranges-tutorial/
T1D GWAS SNPs and CD4+ peakshttps://htmlpreview.github.io/?https://github.com/mikelove/cd4-overlaps/blob/main/CATlas/analysis.html
Fluent genomics workflowhttps://sa-lee.github.io/fluentGenomics/articles/fluentGenomics.html
Tidy spatial analyseshttps://github.com/tidyomics/tidySpatialWorkshop
RNAseq-R-tidyverse 2022https://mblue9.github.io/RNAseq-R-tidyverse/articles/tidytranscriptomics.html
https://github.com/tidyomics#news
Tidyomics bloghttps://tidyomics.github.io/tidyomicsBlog/
https://github.com/tidyomics#talks
Tidy intro talk: the concepts of tidyomics for expression and rangeshttps://tidyomics.github.io/tidy-intro-talk
Tidy analysis of genomic datahttps://github.com/tidyomics/tidy-genomics-talk/blob/main/tidy-genomics-talk.pdf
Tidy enrichment analysis with plyranges and nullrangeshttps://github.com/tidyomics/tidy-genomics-talk/blob/main/tidy-enrichment.pdf
https://github.com/tidyomics#tidyomics-paper
The tidyomics ecosystem: Enhancing omic data analyseshttps://www.biorxiv.org/content/10.1101/2023.09.10.557072v2
https://github.com/tidyomics#getting-help
#tidiness_in_biochttps://community-bioc.zulipchat.com/
Bioconductor support sitehttps://support.bioconductor.org
https://github.com/tidyomics#get-involved
https://github.com/tidyomics/.github/blob/main/profile/tidyomics_community.png
many developershttps://github.com/orgs/tidyomics/people
tidyomics open challengeshttps://github.com/orgs/tidyomics/projects/1
good first issuehttps://github.com/orgs/tidyomics/projects/1/views/1?filterQuery=good+first+issue
Guidelines for contributinghttps://github.com/tidyomics/.github/blob/main/profile/contributing.md
Code of Conducthttps://github.com/tidyomics/.github/blob/main/profile/CODE_OF_CONDUCT.md
#tidiness_in_biochttps://slack.bioconductor.org
tidybulk https://github.com/tidyomics/tidybulk
180 https://github.com/tidyomics/tidybulk/stargazers
27 https://github.com/tidyomics/tidybulk/forks
plyranges https://github.com/tidyomics/plyranges
154 https://github.com/tidyomics/plyranges/stargazers
19 https://github.com/tidyomics/plyranges/forks
tidyomics https://github.com/tidyomics/tidyomics
74 https://github.com/tidyomics/tidyomics/stargazers
2 https://github.com/tidyomics/tidyomics/forks
tidySingleCellExperiment https://github.com/tidyomics/tidySingleCellExperiment
37 https://github.com/tidyomics/tidySingleCellExperiment/stargazers
9 https://github.com/tidyomics/tidySingleCellExperiment/forks
tidySummarizedExperiment https://github.com/tidyomics/tidySummarizedExperiment
30 https://github.com/tidyomics/tidySummarizedExperiment/stargazers
7 https://github.com/tidyomics/tidySummarizedExperiment/forks
tidy-genomics-talk https://github.com/tidyomics/tidy-genomics-talk
18 https://github.com/tidyomics/tidy-genomics-talk/stargazers
2 https://github.com/tidyomics/tidy-genomics-talk/forks
plyrangeshttps://github.com/tidyomics/plyranges
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154https://github.com/tidyomics/plyranges/stargazers
19https://github.com/tidyomics/plyranges/forks
38https://github.com/tidyomics/plyranges/issues
0https://github.com/tidyomics/plyranges/pulls
tidyomicsHackathonTurku2026https://github.com/tidyomics/tidyomicsHackathonTurku2026
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0https://github.com/tidyomics/tidyomicsHackathonTurku2026/issues
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omicslog_devhttps://github.com/tidyomics/omicslog_dev
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tidybulkhttps://github.com/tidyomics/tidybulk
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27https://github.com/tidyomics/tidybulk/forks
14https://github.com/tidyomics/tidybulk/issues
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.githubhttps://github.com/tidyomics/.github
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1https://github.com/tidyomics/.github/stargazers
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0https://github.com/tidyomics/.github/pulls
tidyomicsBloghttps://github.com/tidyomics/tidyomicsBlog
Bioconductor/biocbloghttps://github.com/Bioconductor/biocblog
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43https://github.com/tidyomics/tidyomicsBlog/forks
2https://github.com/tidyomics/tidyomicsBlog/issues
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tidySpatialWorkshophttps://github.com/tidyomics/tidySpatialWorkshop
tidyomics/tidyomicsWorkshopBioc2023https://github.com/tidyomics/tidyomicsWorkshopBioc2023
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15https://github.com/tidyomics/tidySpatialWorkshop/forks
0https://github.com/tidyomics/tidySpatialWorkshop/issues
0https://github.com/tidyomics/tidySpatialWorkshop/pulls
omicsloghttps://github.com/tidyomics/omicslog
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tidySummarizedExperimenthttps://github.com/tidyomics/tidySummarizedExperiment
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7https://github.com/tidyomics/tidySummarizedExperiment/forks
5https://github.com/tidyomics/tidySummarizedExperiment/issues
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tidyprinthttps://github.com/tidyomics/tidyprint
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View all repositorieshttps://github.com/orgs/tidyomics/repositories?type=all
People https://github.com/orgs/tidyomics/people
https://github.com/mikelove
https://github.com/mblue9
https://github.com/csoneson
https://github.com/zhanchen
https://github.com/js2264
https://github.com/ppaxisa
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Communityhttps://github.community/
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