René's URL Explorer Experiment

Title: GitHub - terhorst/psmcpp · GitHub

Open Graph Title: GitHub - terhorst/psmcpp

X Title: GitHub - terhorst/psmcpp

Description: Contribute to terhorst/psmcpp development by creating an account on GitHub.

Open Graph Description: Contribute to terhorst/psmcpp development by creating an account on GitHub.

X Description: Contribute to terhorst/psmcpp development by creating an account on GitHub.

Opengraph URL: https://github.com/terhorst/psmcpp

X: @github

direct link

Domain: github.com

route-pattern	/:user_id/:repository
route-controller	files
route-action	disambiguate
fetch-nonce	v2:f944393b-32ae-3289-d397-53ced0eeec3a
current-catalog-service-hash	f3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id	A566:19F979:5CD4EC:7E1232:6A4C7AE2
html-safe-nonce	245b703f39861235ab020f5169c82c89c4a3b975dc2c7aabe2fde98d5e53fdf9
visitor-payload	eyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJBNTY2OjE5Rjk3OTo1Q0Q0RUM6N0UxMjMyOjZBNEM3QUUyIiwidmlzaXRvcl9pZCI6IjYzNTI4OTY1MzU0NDk4NjA4MzQiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmac	b24ea3d71b03d2c47eb97291d4f322ea3fae90355a02d53d7edee35885005f6c
hovercard-subject-tag	repository:35444120
github-keyboard-shortcuts	repository,copilot
google-site-verification	Apib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-url	https://collector.github.com/github/collect
analytics-location	//
fb:app_id	1401488693436528
apple-itunes-app	app-id=1477376905, app-argument=https://github.com/terhorst/psmcpp
twitter:image	https://opengraph.githubassets.com/6b1943acd2567a08cec1fef682cf88ab2bc249dd03fbdebeab86f59d54b85c90/terhorst/psmcpp
twitter:card	summary_large_image
og:image	https://opengraph.githubassets.com/6b1943acd2567a08cec1fef682cf88ab2bc249dd03fbdebeab86f59d54b85c90/terhorst/psmcpp
og:image:alt	Contribute to terhorst/psmcpp development by creating an account on GitHub.
og:image:width	1200
og:image:height	600
og:site_name	GitHub
og:type	object
hostname	github.com
expected-hostname	github.com
None	3d11bb817438277de2a940854450e83a7d32b6aeb5014e9e6b00a6423900251c
turbo-cache-control	no-cache
go-import	github.com/terhorst/psmcpp git https://github.com/terhorst/psmcpp.git
octolytics-dimension-user_id	18204
octolytics-dimension-user_login	terhorst
octolytics-dimension-repository_id	35444120
octolytics-dimension-repository_nwo	terhorst/psmcpp
octolytics-dimension-repository_public	true
octolytics-dimension-repository_is_fork	false
octolytics-dimension-repository_network_root_id	35444120
octolytics-dimension-repository_network_root_nwo	terhorst/psmcpp
turbo-body-classes	logged-out env-production page-responsive
disable-turbo	false
browser-stats-url	https://api.github.com/_private/browser/stats
browser-errors-url	https://api.github.com/_private/browser/errors
release	56ac743bebb13694b888673bb7257f4b97a4b7fd
ui-target	full
theme-color	#1e2327
color-scheme	light dark

Links:

Skip to content	https://github.com/terhorst/psmcpp#start-of-content
	https://github.com/
Sign in	https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fterhorst%2Fpsmcpp
GitHub CopilotWrite better code with AI	https://github.com/features/copilot
GitHub Copilot appDirect agents from issue to merge	https://github.com/features/ai/github-app
MCP RegistryNewIntegrate external tools	https://github.com/mcp
ActionsAutomate any workflow	https://github.com/features/actions
CodespacesInstant dev environments	https://github.com/features/codespaces
IssuesPlan and track work	https://github.com/features/issues
Code ReviewManage code changes	https://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilities	https://github.com/security/advanced-security
Code securitySecure your code as you build	https://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they start	https://github.com/security/advanced-security/secret-protection
Why GitHub	https://github.com/why-github
Documentation	https://docs.github.com
Blog	https://github.blog
Changelog	https://github.blog/changelog
Marketplace	https://github.com/marketplace
View all features	https://github.com/features
Enterprises	https://github.com/enterprise
Small and medium teams	https://github.com/team
Startups	https://github.com/enterprise/startups
Nonprofits	https://github.com/solutions/industry/nonprofits
App Modernization	https://github.com/solutions/use-case/app-modernization
DevSecOps	https://github.com/solutions/use-case/devsecops
DevOps	https://github.com/solutions/use-case/devops
CI/CD	https://github.com/solutions/use-case/ci-cd
View all use cases	https://github.com/solutions/use-case
Healthcare	https://github.com/solutions/industry/healthcare
Financial services	https://github.com/solutions/industry/financial-services
Manufacturing	https://github.com/solutions/industry/manufacturing
Government	https://github.com/solutions/industry/government
View all industries	https://github.com/solutions/industry
View all solutions	https://github.com/solutions
AI	https://github.com/resources/articles?topic=ai
Software Development	https://github.com/resources/articles?topic=software-development
DevOps	https://github.com/resources/articles?topic=devops
Security	https://github.com/resources/articles?topic=security
View all topics	https://github.com/resources/articles
Customer stories	https://github.com/customer-stories
Events & webinars	https://github.com/resources/events
Ebooks & reports	https://github.com/resources/whitepapers
Business insights	https://github.com/solutions/executive-insights
GitHub Skills	https://skills.github.com
Documentation	https://docs.github.com
Customer support	https://support.github.com
Community forum	https://github.com/orgs/community/discussions
Trust center	https://github.com/trust-center
Partners	https://github.com/partners
View all resources	https://github.com/resources
GitHub SponsorsFund open source developers	https://github.com/sponsors
Security Lab	https://securitylab.github.com
Maintainer Community	https://maintainers.github.com
Accelerator	https://github.com/accelerator
GitHub Stars	https://stars.github.com
Archive Program	https://archiveprogram.github.com
Topics	https://github.com/topics
Trending	https://github.com/trending
Collections	https://github.com/collections
Enterprise platformAI-powered developer platform	https://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security features	https://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI features	https://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 support	https://github.com/premium-support
Pricing	https://github.com/pricing
Search syntax tips	https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentation	https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in	https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fterhorst%2Fpsmcpp
Sign up	https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=terhorst%2Fpsmcpp
Reload	https://github.com/terhorst/psmcpp
Reload	https://github.com/terhorst/psmcpp
Reload	https://github.com/terhorst/psmcpp
terhorst	https://github.com/terhorst
psmcpp	https://github.com/terhorst/psmcpp
Notifications	https://github.com/login?return_to=%2Fterhorst%2Fpsmcpp
Fork 0	https://github.com/login?return_to=%2Fterhorst%2Fpsmcpp
Star 5	https://github.com/login?return_to=%2Fterhorst%2Fpsmcpp
Code	https://github.com/terhorst/psmcpp
Issues 0	https://github.com/terhorst/psmcpp/issues
Pull requests 0	https://github.com/terhorst/psmcpp/pulls
Actions	https://github.com/terhorst/psmcpp/actions
Projects	https://github.com/terhorst/psmcpp/projects
Wiki	https://github.com/terhorst/psmcpp/wiki
Security and quality 0	https://github.com/terhorst/psmcpp/security
Insights	https://github.com/terhorst/psmcpp/pulse
Code	https://github.com/terhorst/psmcpp
Issues	https://github.com/terhorst/psmcpp/issues
Pull requests	https://github.com/terhorst/psmcpp/pulls
Actions	https://github.com/terhorst/psmcpp/actions
Projects	https://github.com/terhorst/psmcpp/projects
Wiki	https://github.com/terhorst/psmcpp/wiki
Security and quality	https://github.com/terhorst/psmcpp/security
Insights	https://github.com/terhorst/psmcpp/pulse
	https://github.com/terhorst/psmcpp
Branches	https://github.com/terhorst/psmcpp/branches
Tags	https://github.com/terhorst/psmcpp/tags
	https://github.com/terhorst/psmcpp/branches
	https://github.com/terhorst/psmcpp/tags
1,328 Commits	https://github.com/terhorst/psmcpp/commits/master/
	https://github.com/terhorst/psmcpp/commits/master/
assets	https://github.com/terhorst/psmcpp/tree/master/assets
assets	https://github.com/terhorst/psmcpp/tree/master/assets
conda	https://github.com/terhorst/psmcpp/tree/master/conda
conda	https://github.com/terhorst/psmcpp/tree/master/conda
example	https://github.com/terhorst/psmcpp/tree/master/example
example	https://github.com/terhorst/psmcpp/tree/master/example
include	https://github.com/terhorst/psmcpp/tree/master/include
include	https://github.com/terhorst/psmcpp/tree/master/include
scripts	https://github.com/terhorst/psmcpp/tree/master/scripts
scripts	https://github.com/terhorst/psmcpp/tree/master/scripts
smcpp	https://github.com/terhorst/psmcpp/tree/master/smcpp
smcpp	https://github.com/terhorst/psmcpp/tree/master/smcpp
src	https://github.com/terhorst/psmcpp/tree/master/src
src	https://github.com/terhorst/psmcpp/tree/master/src
test	https://github.com/terhorst/psmcpp/tree/master/test
test	https://github.com/terhorst/psmcpp/tree/master/test
util	https://github.com/terhorst/psmcpp/tree/master/util
util	https://github.com/terhorst/psmcpp/tree/master/util
.conda.yml	https://github.com/terhorst/psmcpp/blob/master/.conda.yml
.conda.yml	https://github.com/terhorst/psmcpp/blob/master/.conda.yml
.gitignore	https://github.com/terhorst/psmcpp/blob/master/.gitignore
.gitignore	https://github.com/terhorst/psmcpp/blob/master/.gitignore
.travis.yml	https://github.com/terhorst/psmcpp/blob/master/.travis.yml
.travis.yml	https://github.com/terhorst/psmcpp/blob/master/.travis.yml
LICENSE	https://github.com/terhorst/psmcpp/blob/master/LICENSE
LICENSE	https://github.com/terhorst/psmcpp/blob/master/LICENSE
Makefile	https://github.com/terhorst/psmcpp/blob/master/Makefile
Makefile	https://github.com/terhorst/psmcpp/blob/master/Makefile
README.rst	https://github.com/terhorst/psmcpp/blob/master/README.rst
README.rst	https://github.com/terhorst/psmcpp/blob/master/README.rst
pytest.ini	https://github.com/terhorst/psmcpp/blob/master/pytest.ini
pytest.ini	https://github.com/terhorst/psmcpp/blob/master/pytest.ini
setup.cfg	https://github.com/terhorst/psmcpp/blob/master/setup.cfg
setup.cfg	https://github.com/terhorst/psmcpp/blob/master/setup.cfg
setup.py	https://github.com/terhorst/psmcpp/blob/master/setup.py
setup.py	https://github.com/terhorst/psmcpp/blob/master/setup.py
README	https://github.com/terhorst/psmcpp
License	https://github.com/terhorst/psmcpp
	https://travis-ci.org/popgenmethods/smcpp
Quick start guide	https://github.com/terhorst/psmcpp#quick-start-guide
Installation instructions	https://github.com/terhorst/psmcpp#installation-instructions
Build instructions	https://github.com/terhorst/psmcpp#build-instructions
Note for OS X users	https://github.com/terhorst/psmcpp#note-for-os-x-users
Virtual environment	https://github.com/terhorst/psmcpp#virtual-environment
Usage	https://github.com/terhorst/psmcpp#usage
vcf2smc	https://github.com/terhorst/psmcpp#vcf2smc
estimate	https://github.com/terhorst/psmcpp#estimate
cv	https://github.com/terhorst/psmcpp#cv
plot	https://github.com/terhorst/psmcpp#plot
split	https://github.com/terhorst/psmcpp#split
posterior	https://github.com/terhorst/psmcpp#posterior
cite	https://github.com/terhorst/psmcpp#cite
Tips for using SMC++	https://github.com/terhorst/psmcpp#tips-for-using-smc
Frequently asked questions	https://github.com/terhorst/psmcpp#frequently-asked-questions
What to do if you encounter trouble	https://github.com/terhorst/psmcpp#what-to-do-if-you-encounter-trouble
File formats	https://github.com/terhorst/psmcpp#file-formats
Input data format	https://github.com/terhorst/psmcpp#input-data-format
Output data format	https://github.com/terhorst/psmcpp#output-data-format
Quick start guide	https://github.com/terhorst/psmcpp#id8
	https://github.com/terhorst/psmcpp#quick-start-guide
installation instructions	https://github.com/terhorst/psmcpp#installation-instructions
vcf2smc	https://github.com/terhorst/psmcpp#vcf2smc
cv	https://github.com/terhorst/psmcpp#cv
plot	https://github.com/terhorst/psmcpp#plot
split	https://github.com/terhorst/psmcpp#split
Installation instructions	https://github.com/terhorst/psmcpp#id9
	https://github.com/terhorst/psmcpp#installation-instructions
Anaconda	https://www.continuum.io/downloads
build instructions	https://github.com/terhorst/psmcpp#build-instructions
Build instructions	https://github.com/terhorst/psmcpp#id10
	https://github.com/terhorst/psmcpp#build-instructions
gmp	http://gmplib.org
mpfr	http://mpfr.org
gsl	https://github.com/terhorst/psmcpp/blob/master/https/www.gnu.org/software/gsl
Homebrew	http://brew.sh
Note for OS X users	https://github.com/terhorst/psmcpp#id11
	https://github.com/terhorst/psmcpp#note-for-os-x-users
OpenMP	http://openmp.org
Virtual environment	https://github.com/terhorst/psmcpp#id12
	https://github.com/terhorst/psmcpp#virtual-environment
virtual environment	http://docs.python-guide.org/en/latest/dev/virtualenvs/
Usage	https://github.com/terhorst/psmcpp#id13
	https://github.com/terhorst/psmcpp#usage
vcf2smc	https://github.com/terhorst/psmcpp#id14
	https://github.com/terhorst/psmcpp#vcf2smc
	https://github.com/terhorst/psmcpp#required-arguments
indexed VCF file	http://www.htslib.org/doc/tabix.html
estimate	https://github.com/terhorst/psmcpp#estimate
vcf2smc	https://github.com/terhorst/psmcpp#vcf2smc
	https://github.com/terhorst/psmcpp#optional-arguments
	https://github.com/terhorst/psmcpp#composite-likelihood
estimate	https://github.com/terhorst/psmcpp#estimate
	https://github.com/terhorst/psmcpp#caveats
masking	https://github.com/terhorst/psmcpp#masking
input data format	https://github.com/terhorst/psmcpp#input-data-format
estimate	https://github.com/terhorst/psmcpp#id15
	https://github.com/terhorst/psmcpp#estimate
	https://github.com/terhorst/psmcpp#required-arguments-1
vcf2smc	https://github.com/terhorst/psmcpp#vcf2smc
	https://github.com/terhorst/psmcpp#optional-arguments-1
cv	https://github.com/terhorst/psmcpp#id16
	https://github.com/terhorst/psmcpp#cv
estimate	https://github.com/terhorst/psmcpp#estimate
estimate	https://github.com/terhorst/psmcpp#estimate
plot	https://github.com/terhorst/psmcpp#id17
	https://github.com/terhorst/psmcpp#plot
	https://github.com/terhorst/psmcpp#required-arguments-2
estimate	https://github.com/terhorst/psmcpp#estimate
	https://github.com/terhorst/psmcpp#optional-arguments-2
split	https://github.com/terhorst/psmcpp#id18
	https://github.com/terhorst/psmcpp#split
estimate	https://github.com/terhorst/psmcpp#estimate
posterior	https://github.com/terhorst/psmcpp#id19
	https://github.com/terhorst/psmcpp#posterior
	https://github.com/terhorst/psmcpp#required-arguments-3
estimate	https://github.com/terhorst/psmcpp#estimate
vcf2smc	https://github.com/terhorst/psmcpp#vcf2smc
	https://github.com/terhorst/psmcpp#optional-arguments-3
cite	https://github.com/terhorst/psmcpp#id20
	https://github.com/terhorst/psmcpp#cite
accompanying paper	http://www.nature.com/ng/journal/vaop/ncurrent/ng.3748
Tips for using SMC++	https://github.com/terhorst/psmcpp#id21
	https://github.com/terhorst/psmcpp#tips-for-using-smc
estimate	https://github.com/terhorst/psmcpp#estimate
split	https://github.com/terhorst/psmcpp#split
here	https://blogs.mathworks.com/cleve/2012/07/16/splines-and-pchips/#98ccb1df-b614-41d4-b1b5-e090a87e0d46
Frequently asked questions	https://github.com/terhorst/psmcpp#id22
	https://github.com/terhorst/psmcpp#frequently-asked-questions
build instructions	https://github.com/terhorst/psmcpp#build-instructions
vcf2smc	https://github.com/terhorst/psmcpp#vcf2smc
vcf2smc	https://github.com/terhorst/psmcpp#vcf2smc
estimate	https://github.com/terhorst/psmcpp#estimate
What to do if you encounter trouble	https://github.com/terhorst/psmcpp#id23
	https://github.com/terhorst/psmcpp#what-to-do-if-you-encounter-trouble
latest version	https://github.com/popgenmethods/smcpp/releases/latest
file an issue	https://github.com/popgenmethods/smcpp/issues
File formats	https://github.com/terhorst/psmcpp#id24
	https://github.com/terhorst/psmcpp#file-formats
Input data format	https://github.com/terhorst/psmcpp#id25
	https://github.com/terhorst/psmcpp#input-data-format
vcf2smc	https://github.com/terhorst/psmcpp#vcf2smc
Output data format	https://github.com/terhorst/psmcpp#id26
	https://github.com/terhorst/psmcpp#output-data-format
JSON-formatted	https://en.wikipedia.org/wiki/JSON
Readme	https://github.com/terhorst/psmcpp#readme-ov-file
GPL-3.0 license	https://github.com/terhorst/psmcpp#GPL-3.0-1-ov-file
Please reload this page	https://github.com/terhorst/psmcpp
Activity	https://github.com/terhorst/psmcpp/activity
0 forks	https://github.com/terhorst/psmcpp/forks
Report repository	https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fterhorst%2Fpsmcpp&report=terhorst+%28user%29
Releases 10	https://github.com/terhorst/psmcpp/releases
v1.13.0 Latest Apr 19, 2018	https://github.com/terhorst/psmcpp/releases/tag/v1.13.1
+ 9 releases	https://github.com/terhorst/psmcpp/releases
Packages 0	https://github.com/users/terhorst/packages?repo_name=psmcpp
Please reload this page	https://github.com/terhorst/psmcpp
Please reload this page	https://github.com/terhorst/psmcpp
Contributors	https://github.com/terhorst/psmcpp/graphs/contributors
Please reload this page	https://github.com/terhorst/psmcpp
C++ 94.1%	https://github.com/terhorst/psmcpp/search?l=c%2B%2B
Python 4.8%	https://github.com/terhorst/psmcpp/search?l=python
C 0.9%	https://github.com/terhorst/psmcpp/search?l=c
Makefile 0.1%	https://github.com/terhorst/psmcpp/search?l=makefile
Shell 0.1%	https://github.com/terhorst/psmcpp/search?l=shell
CMake 0.0%	https://github.com/terhorst/psmcpp/search?l=cmake
	https://github.com
Terms	https://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacy	https://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Security	https://github.com/security
Status	https://www.githubstatus.com/
Community	https://github.community/
Docs	https://docs.github.com/
Contact	https://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.