René's URL Explorer Experiment

Title: GitHub - stschiff/sequenceTools · GitHub

Open Graph Title: GitHub - stschiff/sequenceTools

X Title: GitHub - stschiff/sequenceTools

Description: Contribute to stschiff/sequenceTools development by creating an account on GitHub.

Open Graph Description: Contribute to stschiff/sequenceTools development by creating an account on GitHub.

X Description: Contribute to stschiff/sequenceTools development by creating an account on GitHub.

Opengraph URL: https://github.com/stschiff/sequenceTools

X: @github

direct link

Domain: github.com

route-pattern	/:user_id/:repository
route-controller	files
route-action	disambiguate
fetch-nonce	v2:537ad989-727f-92d2-34af-07f2ab0bab75
current-catalog-service-hash	f3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id	A048:256945:A3D83D:E662A2:6A4C9ED7
html-safe-nonce	9cf1772b68b04dc346da61eb7635add2488df63a58fa3f9ee4d48f2975a159a1
visitor-payload	eyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJBMDQ4OjI1Njk0NTpBM0Q4M0Q6RTY2MkEyOjZBNEM5RUQ3IiwidmlzaXRvcl9pZCI6IjY2ODcyMzI2MjUzMTQ5MzAzOTEiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmac	4db0946ef17c418bd68053ccaa784ce38495ac6f93f69133bf0002d170366c34
hovercard-subject-tag	repository:38135750
github-keyboard-shortcuts	repository,copilot
google-site-verification	Apib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-url	https://collector.github.com/github/collect
analytics-location	//
fb:app_id	1401488693436528
apple-itunes-app	app-id=1477376905, app-argument=https://github.com/stschiff/sequenceTools
twitter:image	https://opengraph.githubassets.com/f46549cafaac73a6d2b5279564e3ef9db84c7acb77e985694219193350a59013/stschiff/sequenceTools
twitter:card	summary_large_image
og:image	https://opengraph.githubassets.com/f46549cafaac73a6d2b5279564e3ef9db84c7acb77e985694219193350a59013/stschiff/sequenceTools
og:image:alt	Contribute to stschiff/sequenceTools development by creating an account on GitHub.
og:image:width	1200
og:image:height	600
og:site_name	GitHub
og:type	object
hostname	github.com
expected-hostname	github.com
None	3d11bb817438277de2a940854450e83a7d32b6aeb5014e9e6b00a6423900251c
turbo-cache-control	no-cache
go-import	github.com/stschiff/sequenceTools git https://github.com/stschiff/sequenceTools.git
octolytics-dimension-user_id	446618
octolytics-dimension-user_login	stschiff
octolytics-dimension-repository_id	38135750
octolytics-dimension-repository_nwo	stschiff/sequenceTools
octolytics-dimension-repository_public	true
octolytics-dimension-repository_is_fork	false
octolytics-dimension-repository_network_root_id	38135750
octolytics-dimension-repository_network_root_nwo	stschiff/sequenceTools
turbo-body-classes	logged-out env-production page-responsive
disable-turbo	false
browser-stats-url	https://api.github.com/_private/browser/stats
browser-errors-url	https://api.github.com/_private/browser/errors
release	ae90d426644ca15e89bacceb72e51f4e9dbf85f7
ui-target	full
theme-color	#1e2327
color-scheme	light dark

Links:

Skip to content	https://github.com/stschiff/sequenceTools#start-of-content
	https://github.com/
Sign in	https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fstschiff%2FsequenceTools
GitHub CopilotWrite better code with AI	https://github.com/features/copilot
GitHub Copilot appDirect agents from issue to merge	https://github.com/features/ai/github-app
MCP RegistryNewIntegrate external tools	https://github.com/mcp
ActionsAutomate any workflow	https://github.com/features/actions
CodespacesInstant dev environments	https://github.com/features/codespaces
IssuesPlan and track work	https://github.com/features/issues
Code ReviewManage code changes	https://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilities	https://github.com/security/advanced-security
Code securitySecure your code as you build	https://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they start	https://github.com/security/advanced-security/secret-protection
Why GitHub	https://github.com/why-github
Documentation	https://docs.github.com
Blog	https://github.blog
Changelog	https://github.blog/changelog
Marketplace	https://github.com/marketplace
View all features	https://github.com/features
Enterprises	https://github.com/enterprise
Small and medium teams	https://github.com/team
Startups	https://github.com/enterprise/startups
Nonprofits	https://github.com/solutions/industry/nonprofits
App Modernization	https://github.com/solutions/use-case/app-modernization
DevSecOps	https://github.com/solutions/use-case/devsecops
DevOps	https://github.com/solutions/use-case/devops
CI/CD	https://github.com/solutions/use-case/ci-cd
View all use cases	https://github.com/solutions/use-case
Healthcare	https://github.com/solutions/industry/healthcare
Financial services	https://github.com/solutions/industry/financial-services
Manufacturing	https://github.com/solutions/industry/manufacturing
Government	https://github.com/solutions/industry/government
View all industries	https://github.com/solutions/industry
View all solutions	https://github.com/solutions
AI	https://github.com/resources/articles?topic=ai
Software Development	https://github.com/resources/articles?topic=software-development
DevOps	https://github.com/resources/articles?topic=devops
Security	https://github.com/resources/articles?topic=security
View all topics	https://github.com/resources/articles
Customer stories	https://github.com/customer-stories
Events & webinars	https://github.com/resources/events
Ebooks & reports	https://github.com/resources/whitepapers
Business insights	https://github.com/solutions/executive-insights
GitHub Skills	https://skills.github.com
Documentation	https://docs.github.com
Customer support	https://support.github.com
Community forum	https://github.com/orgs/community/discussions
Trust center	https://github.com/trust-center
Partners	https://github.com/partners
View all resources	https://github.com/resources
GitHub SponsorsFund open source developers	https://github.com/sponsors
Security Lab	https://securitylab.github.com
Maintainer Community	https://maintainers.github.com
Accelerator	https://github.com/accelerator
GitHub Stars	https://stars.github.com
Archive Program	https://archiveprogram.github.com
Topics	https://github.com/topics
Trending	https://github.com/trending
Collections	https://github.com/collections
Enterprise platformAI-powered developer platform	https://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security features	https://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI features	https://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 support	https://github.com/premium-support
Pricing	https://github.com/pricing
Search syntax tips	https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentation	https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in	https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fstschiff%2FsequenceTools
Sign up	https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=stschiff%2FsequenceTools
Reload	https://github.com/stschiff/sequenceTools
Reload	https://github.com/stschiff/sequenceTools
Reload	https://github.com/stschiff/sequenceTools
stschiff	https://github.com/stschiff
sequenceTools	https://github.com/stschiff/sequenceTools
Notifications	https://github.com/login?return_to=%2Fstschiff%2FsequenceTools
Fork 13	https://github.com/login?return_to=%2Fstschiff%2FsequenceTools
Star 52	https://github.com/login?return_to=%2Fstschiff%2FsequenceTools
Code	https://github.com/stschiff/sequenceTools
Issues 5	https://github.com/stschiff/sequenceTools/issues
Pull requests 0	https://github.com/stschiff/sequenceTools/pulls
Actions	https://github.com/stschiff/sequenceTools/actions
Projects	https://github.com/stschiff/sequenceTools/projects
Security and quality 0	https://github.com/stschiff/sequenceTools/security
Insights	https://github.com/stschiff/sequenceTools/pulse
Code	https://github.com/stschiff/sequenceTools
Issues	https://github.com/stschiff/sequenceTools/issues
Pull requests	https://github.com/stschiff/sequenceTools/pulls
Actions	https://github.com/stschiff/sequenceTools/actions
Projects	https://github.com/stschiff/sequenceTools/projects
Security and quality	https://github.com/stschiff/sequenceTools/security
Insights	https://github.com/stschiff/sequenceTools/pulse
	https://github.com/stschiff/sequenceTools
Branches	https://github.com/stschiff/sequenceTools/branches
Tags	https://github.com/stschiff/sequenceTools/tags
	https://github.com/stschiff/sequenceTools/branches
	https://github.com/stschiff/sequenceTools/tags
311 Commits	https://github.com/stschiff/sequenceTools/commits/master/
	https://github.com/stschiff/sequenceTools/commits/master/
.github/workflows	https://github.com/stschiff/sequenceTools/tree/master/.github/workflows
.github/workflows	https://github.com/stschiff/sequenceTools/tree/master/.github/workflows
old	https://github.com/stschiff/sequenceTools/tree/master/old
old	https://github.com/stschiff/sequenceTools/tree/master/old
paper	https://github.com/stschiff/sequenceTools/tree/master/paper
paper	https://github.com/stschiff/sequenceTools/tree/master/paper
scripts	https://github.com/stschiff/sequenceTools/tree/master/scripts
scripts	https://github.com/stschiff/sequenceTools/tree/master/scripts
src-executables	https://github.com/stschiff/sequenceTools/tree/master/src-executables
src-executables	https://github.com/stschiff/sequenceTools/tree/master/src-executables
src/SequenceTools	https://github.com/stschiff/sequenceTools/tree/master/src/SequenceTools
src/SequenceTools	https://github.com/stschiff/sequenceTools/tree/master/src/SequenceTools
test	https://github.com/stschiff/sequenceTools/tree/master/test
test	https://github.com/stschiff/sequenceTools/tree/master/test
.gitignore	https://github.com/stschiff/sequenceTools/blob/master/.gitignore
.gitignore	https://github.com/stschiff/sequenceTools/blob/master/.gitignore
.travis.yml	https://github.com/stschiff/sequenceTools/blob/master/.travis.yml
.travis.yml	https://github.com/stschiff/sequenceTools/blob/master/.travis.yml
CODE_OF_CONDUCT.md	https://github.com/stschiff/sequenceTools/blob/master/CODE_OF_CONDUCT.md
CODE_OF_CONDUCT.md	https://github.com/stschiff/sequenceTools/blob/master/CODE_OF_CONDUCT.md
CONTRIBUTING.md	https://github.com/stschiff/sequenceTools/blob/master/CONTRIBUTING.md
CONTRIBUTING.md	https://github.com/stschiff/sequenceTools/blob/master/CONTRIBUTING.md
Changelog.md	https://github.com/stschiff/sequenceTools/blob/master/Changelog.md
Changelog.md	https://github.com/stschiff/sequenceTools/blob/master/Changelog.md
LICENSE	https://github.com/stschiff/sequenceTools/blob/master/LICENSE
LICENSE	https://github.com/stschiff/sequenceTools/blob/master/LICENSE
README.md	https://github.com/stschiff/sequenceTools/blob/master/README.md
README.md	https://github.com/stschiff/sequenceTools/blob/master/README.md
Setup.hs	https://github.com/stschiff/sequenceTools/blob/master/Setup.hs
Setup.hs	https://github.com/stschiff/sequenceTools/blob/master/Setup.hs
sequenceTools.cabal	https://github.com/stschiff/sequenceTools/blob/master/sequenceTools.cabal
sequenceTools.cabal	https://github.com/stschiff/sequenceTools/blob/master/sequenceTools.cabal
stack.yaml	https://github.com/stschiff/sequenceTools/blob/master/stack.yaml
stack.yaml	https://github.com/stschiff/sequenceTools/blob/master/stack.yaml
README	https://github.com/stschiff/sequenceTools
Code of conduct	https://github.com/stschiff/sequenceTools
Contributing	https://github.com/stschiff/sequenceTools
BSD-3-Clause license	https://github.com/stschiff/sequenceTools
	https://doi.org/10.21105/joss.08634
	https://doi.org/10.5281/zenodo.18400553
	https://github.com/stschiff/sequenceTools#sequencetools
Install with Bioconda	https://anaconda.org/bioconda/sequencetools
	https://github.com/stschiff/sequenceTools#installation
	https://github.com/stschiff/sequenceTools#installation-via-precompiled-executables
Download the latest Executable	https://github.com/stschiff/sequenceTools/releases/latest
	https://github.com/stschiff/sequenceTools#installation-from-source
	https://github.com/stschiff/sequenceTools#pileupcaller
	https://github.com/stschiff/sequenceTools#overview
here	https://rarecoal-docs.readthedocs.io/en/latest/rarecoal-tools.html#vcf2freqsum
	https://github.com/stschiff/sequenceTools#options
	https://github.com/stschiff/sequenceTools#singlestrandmode
	https://github.com/stschiff/sequenceTools#vcf-output
https://samtools.github.io/hts-specs/VCFv4.5.pdf	https://samtools.github.io/hts-specs/VCFv4.5.pdf
	https://github.com/stschiff/sequenceTools#summary-statistics
	https://github.com/stschiff/sequenceTools#vcf2eigenstrat
	https://github.com/stschiff/sequenceTools#genostats
	https://github.com/stschiff/sequenceTools#scripts
ADMIXTOOLS and EIGENSOFT	https://reich.hms.harvard.edu/software
Readme	https://github.com/stschiff/sequenceTools#readme-ov-file
BSD-3-Clause license	https://github.com/stschiff/sequenceTools#BSD-3-Clause-1-ov-file
Code of conduct	https://github.com/stschiff/sequenceTools#coc-ov-file
Contributing	https://github.com/stschiff/sequenceTools#contributing-ov-file
Please reload this page	https://github.com/stschiff/sequenceTools
Activity	https://github.com/stschiff/sequenceTools/activity
13 forks	https://github.com/stschiff/sequenceTools/forks
Report repository	https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fstschiff%2FsequenceTools&report=stschiff+%28user%29
Releases 10	https://github.com/stschiff/sequenceTools/releases
Release v1.6.0.0 Latest Jan 28, 2026	https://github.com/stschiff/sequenceTools/releases/tag/v1.6.0.0
+ 9 releases	https://github.com/stschiff/sequenceTools/releases
Packages 0	https://github.com/users/stschiff/packages?repo_name=sequenceTools
Please reload this page	https://github.com/stschiff/sequenceTools
Please reload this page	https://github.com/stschiff/sequenceTools
Contributors	https://github.com/stschiff/sequenceTools/graphs/contributors
Please reload this page	https://github.com/stschiff/sequenceTools
Haskell 67.0%	https://github.com/stschiff/sequenceTools/search?l=haskell
TeX 15.4%	https://github.com/stschiff/sequenceTools/search?l=tex
D 9.4%	https://github.com/stschiff/sequenceTools/search?l=d
Python 7.4%	https://github.com/stschiff/sequenceTools/search?l=python
Shell 0.6%	https://github.com/stschiff/sequenceTools/search?l=shell
Makefile 0.1%	https://github.com/stschiff/sequenceTools/search?l=makefile
Awk 0.1%	https://github.com/stschiff/sequenceTools/search?l=awk
	https://github.com
Terms	https://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacy	https://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Security	https://github.com/security
Status	https://www.githubstatus.com/
Community	https://github.community/
Docs	https://docs.github.com/
Contact	https://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.