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Title: GitHub - soopn/DeepTrack2: DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experimental imaging. · GitHub

Open Graph Title: GitHub - soopn/DeepTrack2: DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experimental imaging.

X Title: GitHub - soopn/DeepTrack2: DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experimental imaging.

Description: DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experimental imaging. - soopn/DeepTrack2

Open Graph Description: DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experimental imaging. - soopn/DeepTrack2

X Description: DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experimental imaging. - soopn/DeepTrack2

Opengraph URL: https://github.com/soopn/DeepTrack2

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	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/assets/DeepTrack2-logo.png?raw=true
	https://github.com/soopn/DeepTrack2#deeptrack2---a-comprehensive-deep-learning-framework-for-digital-microscopy
	https://github.com/soopn/DeepTrack2/blob/develop/LICENSE
	https://badge.fury.io/py/deeptrack
	https://deeptrackai.github.io/DeepTrack2
	https://badge.fury.io/py/deeptrack
	https://doi.org/10.1063/5.0034891
Installation	https://github.com/soopn/DeepTrack2#installation
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Cite us	https://github.com/soopn/DeepTrack2#cite-us
License	https://github.com/soopn/DeepTrack2/blob/develop/LICENSE
	https://github.com/soopn/DeepTrack2#installation
	https://github.com/soopn/DeepTrack2#getting-started
Introduction to DeepTrack2	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS101_intro.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS101_intro.ipynb
Simulating Different Image Modalities	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS106_particle_image_modalities.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS106_particle_image_modalities.ipynb
Loading Image Files Using Sources	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS111_datafiles.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS111_datafiles.ipynb
Tracking a Point Particle with a CNN	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS121_tracking_particle_cnn.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS121_tracking_particle_cnn.ipynb
Characterizing Aberrations with a CNN	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS126_characterizing_aberrations_cnn.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS126_characterizing_aberrations_cnn.ipynb
Characterizing Aberrations with Optuna	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS127_characterizing_aberrations_optuna.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS127_characterizing_aberrations_optuna.ipynb
Optuna	https://optuna.org/
Tracking Multiple Particles with a U-Net	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS131_tracking_multiple_particles_unet.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS131_tracking_multiple_particles_unet.ipynb
Distinguishing Particles with a U-Net	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS141_distinguishing_particles_in_brightfield.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS141_distinguishing_particles_in_brightfield.ipynb
Unsupervised Object Detection	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS151_unsupervised_object_detection_with_lodestar.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS151_unsupervised_object_detection_with_lodestar.ipynb
Fitting Using PyTorch Gradients	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS161_torch_fitting.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS161_torch_fitting.ipynb
Creating Custom Scatterers	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS171A_custom_scatterers.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS171A_custom_scatterers.ipynb
Creating Custom Scatterers: Bacteria	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS171B_custom_scatterers_bacteria.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS171B_custom_scatterers_bacteria.ipynb
	https://github.com/soopn/DeepTrack2#examples
MNIST	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx211_MNIST.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx211_MNIST.ipynb
Single Particle Tracking	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx212_single_particle_tracking.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx212_single_particle_tracking.ipynb
	https://github.com/soopn/DeepTrack2/blob/develop/assets/SPT-ideal.gif?raw=true
	https://github.com/soopn/DeepTrack2/blob/develop/assets/SPT-noisy.gif?raw=true
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx212_single_particle_tracking.ipynb
	https://doi.org/10.1364/OPTICA.6.000506
	https://doi.org/10.1063/5.0034891
Multi-Particle tracking	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx213_multi_particle_tracking.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx213_multi_particle_tracking.ipynb
	https://github.com/soopn/DeepTrack2/blob/develop/assets/MPT-qdots_1.png?raw=true
LodeSTAR autotracker template	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231A_LodeSTAR_autotracker_template.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231A_LodeSTAR_autotracker_template.ipynb
	https://github.com/soopn/DeepTrack2/blob/develop/assets/MPT-packed.gif?raw=true
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231A_LodeSTAR_autotracker_template.ipynb
	https://doi.org/10.1038/s41467-022-35004-y
LodeSTAR Detecting the Cells in the BF-C2DT-HSC Dataset	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231D_LodeSTAR_track_BF-C2DL-HSC.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231D_LodeSTAR_track_BF-C2DL-HSC.ipynb
LodeSTAR Detecting the Cells in the Fluo-C2DT-Huh7 Dataset	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231E_LodeSTAR_track_Fluo-C2DL-Huh7.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231E_LodeSTAR_track_Fluo-C2DL-Huh7.ipynb
LodeSTAR Detecting the Cells in the PhC-C2DT-PSC Dataset	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231F_LodeSTAR_track_PhC-C2DL-PSC.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231F_LodeSTAR_track_PhC-C2DL-PSC.ipynb
	https://github.com/soopn/DeepTrack2/blob/develop/assets/Tracing.gif?raw=true
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx241A_MAGIK_cell_migration_analysis.ipynb
	https://doi.org/10.1038/s42256-022-00595-0
	https://github.com/soopn/DeepTrack2#advanced-tutorials
deeptrack.features	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT301_features.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT301_features.ipynb
deeptrack.properties	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT306_properties.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT306_properties.ipynb
deeptrack.image	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT311_image.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT311_image.ipynb
deeptrack.scatterers	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT321_scatterers.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT321_scatterers.ipynb
deeptrack.optics	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT323_optics.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT323_optics.ipynb
deeptrack.holography	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT324_holography.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT324_holography.ipynb
deeptrack.aberrations	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT325_aberrations.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT325_aberrations.ipynb
deeptrack.noises	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT327_noises.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT327_noises.ipynb
deeptrack.augmentations	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT329_augmentations.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT329_augmentations.ipynb
deeptrack.sequences	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT341_sequences.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT341_sequences.ipynb
deeptrack.math	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT381_math.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT381_math.ipynb
deeptrack.utils	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT383_utils.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT383_utils.ipynb
deeptrack.statistics	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT385_statistics.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT385_statistics.ipynb
deeptrack.types	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT_387_types.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT_387_types.ipynb
deeptrack.elementwise	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT389_elementwise.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT389_elementwise.ipynb
deeptrack.sources.base	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT391A_sources.base.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT391A_sources.base.ipynb
deeptrack.sources.folder	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT391B_sources.folder.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT391B_sources.folder.ipynb
deeptrack.pytorch.data	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT393A_pytorch.features.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT393A_pytorch.features.ipynb
deeptrack.pytorch.features	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT393B_pytorch.data.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT393B_pytorch.data.ipynb
deeptrack.extras.radialcenter	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT395_extras.radialcenter.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT395_extras.radialcenter.ipynb
deeptrack.backend.core	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT399A_backend.core.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT399A_backend.core.ipynb
deeptrack.backend.pint_definition	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT399B_backend.pint_definition.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT399B_backend.pint_definition.ipynb
deeptrack.backend.units	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT399C_backend.units.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT399C_backend.units.ipynb
deeptrack.backend.polynomials	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT399D_backend.polynomials.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT399D_backend.polynomials.ipynb
deeptrack.backend.mie	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT399E_backend.mie.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT399E_backend.mie.ipynb
deeptrack.backend._config	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT399F_backend._config.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/3-advanced-topics/DTAT399F_backend._config.ipynb
	https://github.com/soopn/DeepTrack2#developer-tutorials
Overview of Code Base	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/4-developers/DTDV401_overview.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/4-developers/DTDV401_overview.ipynb
Style Guide	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/4-developers/DTDV411_style.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/4-developers/DTDV411_style.ipynb
Using Different Computational Backends	https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/4-developers/DTDV421_backends.ipynb
	https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/4-developers/DTDV421_backends.ipynb
	https://github.com/soopn/DeepTrack2#documentation
https://deeptrackai.github.io/DeepTrack2	https://deeptrackai.github.io/DeepTrack2
	https://github.com/soopn/DeepTrack2#cite-us
https://pubs.aip.org/aip/apr/article/8/1/011310/238663	https://pubs.aip.org/aip/apr/article/8/1/011310/238663
https://nostarch.com/deep-learning-crash-course	https://nostarch.com/deep-learning-crash-course
https://www.nature.com/articles/s41467-022-35004-y	https://www.nature.com/articles/s41467-022-35004-y
https://www.nature.com/articles/s42256-022-00595-0	https://www.nature.com/articles/s42256-022-00595-0
https://doi.org/10.1364/OPTICA.6.000506	https://doi.org/10.1364/OPTICA.6.000506
	https://github.com/soopn/DeepTrack2#funding
deeptrackai.github.io/DeepTrack2/	https://deeptrackai.github.io/DeepTrack2/
Readme	https://github.com/soopn/DeepTrack2#readme-ov-file
MIT license	https://github.com/soopn/DeepTrack2#MIT-1-ov-file
Please reload this page	https://github.com/soopn/DeepTrack2
Activity	https://github.com/soopn/DeepTrack2/activity
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Releases	https://github.com/soopn/DeepTrack2/releases
Packages 0	https://github.com/users/soopn/packages?repo_name=DeepTrack2
Please reload this page	https://github.com/soopn/DeepTrack2
Contributors	https://github.com/soopn/DeepTrack2/graphs/contributors
Please reload this page	https://github.com/soopn/DeepTrack2
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