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Open Graph Title: smithlabcode/dnmtools

X Title: smithlabcode/dnmtools

Description: Tools for analyzing DNA methylation data. Contribute to smithlabcode/dnmtools development by creating an account on GitHub.

Open Graph Description: Tools for analyzing DNA methylation data. Contribute to smithlabcode/dnmtools development by creating an account on GitHub.

X Description: Tools for analyzing DNA methylation data. Contribute to smithlabcode/dnmtools development by creating an account on GitHub.

Opengraph URL: https://github.com/smithlabcode/dnmtools

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Crashes when chromosomes have no CpG siteshttps://github.com/smithlabcode/dnmtools/issues/307
andrewdavidsmithhttps://github.com/smithlabcode/dnmtools/issues?q=is%3Aissue%20state%3Aopen%20author%3Aandrewdavidsmith
the interpretation of the amrfinder outputhttps://github.com/smithlabcode/dnmtools/issues/297
JJJelly77https://github.com/smithlabcode/dnmtools/issues?q=is%3Aissue%20state%3Aopen%20author%3AJJJelly77
Blank output from dnmtools amrfinderhttps://github.com/smithlabcode/dnmtools/issues/296
JJJelly77https://github.com/smithlabcode/dnmtools/issues?q=is%3Aissue%20state%3Aopen%20author%3AJJJelly77
Merge and dnmtools hmr-rephttps://github.com/smithlabcode/dnmtools/issues/291
vagan21https://github.com/smithlabcode/dnmtools/issues?q=is%3Aissue%20state%3Aopen%20author%3Avagan21
SAM file is not sorted ERROR even if the input file is sortedhttps://github.com/smithlabcode/dnmtools/issues/260
YuanfengZhanghttps://github.com/smithlabcode/dnmtools/issues?q=is%3Aissue%20state%3Aopen%20author%3AYuanfengZhang
feature to use read from bam files in igv before bisulfate conversion statehttps://github.com/smithlabcode/dnmtools/issues/258
chuddy-ibkhttps://github.com/smithlabcode/dnmtools/issues?q=is%3Aissue%20state%3Aopen%20author%3Achuddy-ibk
regions not sorted in filehttps://github.com/smithlabcode/dnmtools/issues/257
JavenCaohttps://github.com/smithlabcode/dnmtools/issues?q=is%3Aissue%20state%3Aopen%20author%3AJavenCao
Negative mean coverage returned by dnmtools pmdhttps://github.com/smithlabcode/dnmtools/issues/255
zhoujt1994https://github.com/smithlabcode/dnmtools/issues?q=is%3Aissue%20state%3Aopen%20author%3Azhoujt1994
The hmr command fails when methylation levels are at extremeshttps://github.com/smithlabcode/dnmtools/issues/251
bugSomething isn't workinghttps://github.com/smithlabcode/dnmtools/issues?q=is%3Aissue%20state%3Aopen%20label%3Abug
andrewdavidsmithhttps://github.com/smithlabcode/dnmtools/issues?q=is%3Aissue%20state%3Aopen%20author%3Aandrewdavidsmith
Are there any parameters that need to be tuned for mapping WGBS data to repeat regions?https://github.com/smithlabcode/dnmtools/issues/248
QianhuiWanhttps://github.com/smithlabcode/dnmtools/issues?q=is%3Aissue%20state%3Aopen%20author%3AQianhuiWan
roi should check for input files before reporting any problems with argumentshttps://github.com/smithlabcode/dnmtools/issues/154
good first issueGood for newcomershttps://github.com/smithlabcode/dnmtools/issues?q=is%3Aissue%20state%3Aopen%20label%3A%22good%20first%20issue%22
andrewdavidsmithhttps://github.com/smithlabcode/dnmtools/issues?q=is%3Aissue%20state%3Aopen%20author%3Aandrewdavidsmith
Keep non-CpG sites after sym commandhttps://github.com/smithlabcode/dnmtools/issues/139
natlianghttps://github.com/smithlabcode/dnmtools/issues?q=is%3Aissue%20state%3Aopen%20author%3Anatliang
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